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Volumn 26, Issue 13, 2006, Pages 4853-4862

Fine-structure analysis of ribosomal protein gene transcription

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED DNA POLYMERASE ALPHA; LEXA PROTEIN; PROTEIN; PROTEIN FHL1; PROTEIN IFH1; RAP1 PROTEIN; RIBOSOME PROTEIN; TARGET OF RAPAMYCIN KINASE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 33745433124     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.02367-05     Document Type: Article
Times cited : (84)

References (43)
  • 2
    • 1942453302 scopus 로고    scopus 로고
    • Predicting gene expression from sequence
    • Beer, M. A., and S. Tavazoie. 2004. Predicting gene expression from sequence. Cell 117:185-198.
    • (2004) Cell , vol.117 , pp. 185-198
    • Beer, M.A.1    Tavazoie, S.2
  • 4
    • 0038094501 scopus 로고    scopus 로고
    • Nucleosomes unfold completely at a transcriptionally active promoter
    • Boeger, H., J. Griesenbeck, J. S. Strattan, and R. D. Kornberg. 2003. Nucleosomes unfold completely at a transcriptionally active promoter. Mol. Cell 11:1587-1598.
    • (2003) Mol. Cell , vol.11 , pp. 1587-1598
    • Boeger, H.1    Griesenbeck, J.2    Strattan, J.S.3    Kornberg, R.D.4
  • 5
    • 0028966548 scopus 로고
    • The IFH1 gene product interacts with a fork head protein in Saccharomyces cerevisiae
    • Cherel, I., and P. Thuriaux. 1995. The IFH1 gene product interacts with a fork head protein in Saccharomyces cerevisiae. Yeast 11:261-270.
    • (1995) Yeast , vol.11 , pp. 261-270
    • Cherel, I.1    Thuriaux, P.2
  • 6
    • 0023665258 scopus 로고
    • The yeast ribosomal protein L32 and its gene
    • Dabeva, M. D., and J. R. Warner. 1987. The yeast ribosomal protein L32 and its gene. J. Biol. Chem. 262:16055-16059.
    • (1987) J. Biol. Chem. , vol.262 , pp. 16055-16059
    • Dabeva, M.D.1    Warner, J.R.2
  • 7
    • 0030669030 scopus 로고    scopus 로고
    • Exploring the metabolic and genetic control of gene expression on a genomic scale
    • DeRisi, J. L., V. R. Iyer, and P. O. Brown. 1997. Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278:680-686.
    • (1997) Science , vol.278 , pp. 680-686
    • DeRisi, J.L.1    Iyer, V.R.2    Brown, P.O.3
  • 8
    • 0030001055 scopus 로고    scopus 로고
    • Activation mechanism of the multifunctional transcription factor repressor-activator protein 1 (Rap1p)
    • Drazinic, C. M., J. B. Smerage, M. C. Lopez, and H. V. Baker. 1996. Activation mechanism of the multifunctional transcription factor repressor-activator protein 1 (Rap1p). Mol. Cell. Biol. 16:3187-3196.
    • (1996) Mol. Cell. Biol. , vol.16 , pp. 3187-3196
    • Drazinic, C.M.1    Smerage, J.B.2    Lopez, M.C.3    Baker, H.V.4
  • 10
    • 0029092610 scopus 로고
    • Correlation of two-hybrid affinity data with in vitro measurements
    • Estojak, J., R. Brent, and E. A. Golemis. 1995. Correlation of two-hybrid affinity data with in vitro measurements. Mol. Cell. Biol. 15:5820-5829.
    • (1995) Mol. Cell. Biol. , vol.15 , pp. 5820-5829
    • Estojak, J.1    Brent, R.2    Golemis, E.A.3
  • 12
    • 0029037655 scopus 로고
    • Transcription activation of yeast ribosomal protein genes requires additional elements apart from binding sites for Abf1p or Rap1p
    • Goncalves, P. M., G. Griffioen, R. Minnee, M. Bosma, L. S. Kraakman, W. H. Mager, and R. J. Planta. 1995. Transcription activation of yeast ribosomal protein genes requires additional elements apart from binding sites for Abf1p or Rap1p. Nucleic Acids Res. 23:1475-1480.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 1475-1480
    • Goncalves, P.M.1    Griffioen, G.2    Minnee, R.3    Bosma, M.4    Kraakman, L.S.5    Mager, W.H.6    Planta, R.J.7
  • 13
    • 0030062262 scopus 로고    scopus 로고
    • C-terminal domains of general regulatory factors Abf1p and Rap1p in Saccharomyces ceievisiae display functional similarity
    • Goncalves, P. M., K. Maurer, G. van Nieuw Amerongen, K. Bergkamp-Steffens, W. H. Mager, and R. J. Planta. 1996. C-terminal domains of general regulatory factors Abf1p and Rap1p in Saccharomyces ceievisiae display functional similarity. Mol. Miciobiol. 19:535-543.
    • (1996) Mol. Miciobiol. , vol.19 , pp. 535-543
    • Goncalves, P.M.1    Maurer, K.2    Van Nieuw Amerongen, G.3    Bergkamp-Steffens, K.4    Mager, W.H.5    Planta, R.J.6
  • 14
    • 0028293432 scopus 로고
    • Suppression of yeast RNA polymerase III mutations by FHL1, a gene coding for a fork head protein involved in rRNA processing
    • Hermann-Le Denmat, S., M. Werner, A. Sentenac, and P. Thuriaux. 1994. Suppression of yeast RNA polymerase III mutations by FHL1, a gene coding for a fork head protein involved in rRNA processing. Mol. Cell. Biol. 14:2905-2913.
    • (1994) Mol. Cell. Biol. , vol.14 , pp. 2905-2913
    • Hermann-Le Denmat, S.1    Werner, M.2    Sentenac, A.3    Thuriaux, P.4
  • 16
    • 0033542436 scopus 로고    scopus 로고
    • Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme
    • Kuras, L., and K. Struhl. 1999. Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature 399:609-613.
    • (1999) Nature , vol.399 , pp. 609-613
    • Kuras, L.1    Struhl, K.2
  • 17
    • 0032929162 scopus 로고    scopus 로고
    • DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences
    • Lascaris, R. F., W. H. Mager, and R. J. Planta. 1999. DNA-binding requirements of the yeast protein Rap1p as selected in silico from ribosomal protein gene promoter sequences. Bioinfoimatics 15:267-277.
    • (1999) Bioinfoimatics , vol.15 , pp. 267-277
    • Lascaris, R.F.1    Mager, W.H.2    Planta, R.J.3
  • 18
    • 3543023310 scopus 로고    scopus 로고
    • Evidence for nucleosome depletion at active regulatory regions genome-wide
    • Lee, C. K., Y. Shibata, B. Rao, B. D. Strahl, and J. D. Lieb. 2004. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat. Genet. 36:900-905.
    • (2004) Nat. Genet. , vol.36 , pp. 900-905
    • Lee, C.K.1    Shibata, Y.2    Rao, B.3    Strahl, B.D.4    Lieb, J.D.5
  • 20
    • 0032788547 scopus 로고    scopus 로고
    • Transcriptional elements involved in the repression of ribosomal protein synthesis
    • Li, B., C. R. Nierras, and J. R. Warner. 1999. Transcriptional elements involved in the repression of ribosomal protein synthesis. Mol. Cell. Biol. 19:5393-5404.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 5393-5404
    • Li, B.1    Nierras, C.R.2    Warner, J.R.3
  • 21
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb, J. D., X. Liu, D. Botstein, and P. O. Brown. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28:327-334.
    • (2001) Nat. Genet. , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 22
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-ΔΔC(T)) method
    • Livak, K. J., and T. D. Schmittgen. 2001. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-ΔΔC(T)) method. Methods 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 23
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine, M. S., A. McKenzie III, D. J. Demarini, N. G. Shah, A. Wach, A. Brachat, P. Philippsen, and J. R. Pringle. 1998. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14:953-961.
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie III, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6    Philippsen, P.7    Pringle, J.R.8
  • 24
    • 0032564429 scopus 로고    scopus 로고
    • Multiple domains of repressor activator protein 1 contribute to facilitated binding of glycolysis regulatory protein 1
    • Lopez, M. C., J. B. Smerage, and H. V. Baker. 1998. Multiple domains of repressor activator protein 1 contribute to facilitated binding of glycolysis regulatory protein 1. Proc. Natl. Acad. Sci. USA 95:14112-14117.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 14112-14117
    • Lopez, M.C.1    Smerage, J.B.2    Baker, H.V.3
  • 26
    • 11144273952 scopus 로고    scopus 로고
    • TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1
    • Martin, D. E., A. Soulard, and M. N. Hall. 2004. TOR regulates ribosomal protein gene expression via PKA and the Forkhead transcription factor FHL1. Cell 119:969-979.
    • (2004) Cell , vol.119 , pp. 969-979
    • Martin, D.E.1    Soulard, A.2    Hall, M.N.3
  • 27
    • 0036239962 scopus 로고    scopus 로고
    • Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast
    • Mencia, M., Z. Moqtaderi, J. V. Geisberg, L. Kuras, and K. Struhl. 2002. Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast. Mol. Cell 9:823-833.
    • (2002) Mol. Cell , vol.9 , pp. 823-833
    • Mencia, M.1    Moqtaderi, Z.2    Geisberg, J.V.3    Kuras, L.4    Struhl, K.5
  • 28
    • 0033981095 scopus 로고    scopus 로고
    • RAP, RAP, open up! New wrinkles for RAP1 in yeast
    • Morse, R. H. 2000. RAP, RAP, open up! New wrinkles for RAP1 in yeast. Trends Genet. 16:51-53.
    • (2000) Trends Genet. , vol.16 , pp. 51-53
    • Morse, R.H.1
  • 31
    • 0034515772 scopus 로고    scopus 로고
    • Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
    • Reid, J. L., V. R. Iyer, P. O. Brown, and K. Struhl. 2000. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase. Mol. Cell 6:1297-1307.
    • (2000) Mol. Cell , vol.6 , pp. 1297-1307
    • Reid, J.L.1    Iyer, V.R.2    Brown, P.O.3    Struhl, K.4
  • 33
    • 14844282303 scopus 로고    scopus 로고
    • Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins
    • Rudra, D., Y. Zhao, and J. R. Warner. 2005. Central role of Ifh1p-Fhl1p interaction in the synthesis of yeast ribosomal proteins. EMBO J. 24:533-542.
    • (2005) EMBO J. , vol.24 , pp. 533-542
    • Rudra, D.1    Zhao, Y.2    Warner, J.R.3
  • 34
    • 11144244771 scopus 로고    scopus 로고
    • Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1
    • Schawalder, S. B., M. Kabani, I. Howald, U. Choudhury, M. Werner, and D. Shore. 2004. Growth-regulated recruitment of the essential yeast ribosomal protein gene activator Ifh1. Nature 432:1058-1061.
    • (2004) Nature , vol.432 , pp. 1058-1061
    • Schawalder, S.B.1    Kabani, M.2    Howald, I.3    Choudhury, U.4    Werner, M.5    Shore, D.6
  • 35
    • 0024669291 scopus 로고
    • A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae
    • Sikorski, R. S., and P. Hieter. 1989. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122:19-27.
    • (1989) Genetics , vol.122 , pp. 19-27
    • Sikorski, R.S.1    Hieter, P.2
  • 36
    • 0024977417 scopus 로고
    • Elevated recombination rates in transcriptionally active DNA
    • Thomas, B. J., and R. Rothstein. 1989. Elevated recombination rates in transcriptionally active DNA. Cell 56:619-630.
    • (1989) Cell , vol.56 , pp. 619-630
    • Thomas, B.J.1    Rothstein, R.2
  • 37
    • 0030876430 scopus 로고    scopus 로고
    • The role of Gcr1p in the transcriptional activation of glycolytic genes in yeast Saccharomyces cerevisiae
    • Uemura, H., M. Koshio, Y. Inoue, M. C. Lopez, and H. V. Baker. 1997. The role of Gcr1p in the transcriptional activation of glycolytic genes in yeast Saccharomyces cerevisiae. Genetics 147:521-532.
    • (1997) Genetics , vol.147 , pp. 521-532
    • Uemura, H.1    Koshio, M.2    Inoue, Y.3    Lopez, M.C.4    Baker, H.V.5
  • 38
    • 0027957734 scopus 로고
    • Regulation of splicing at an intermediate step in the formation of the spliceosome
    • Vilardell, J., and J. R. Warner. 1994. Regulation of splicing at an intermediate step in the formation of the spliceosome. Genes Dev. 8:211-220.
    • (1994) Genes Dev. , vol.8 , pp. 211-220
    • Vilardell, J.1    Warner, J.R.2
  • 39
    • 11144231369 scopus 로고    scopus 로고
    • The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes
    • Wade, J. T., D. B. Hall, and K. Struhl. 2004. The transcription factor Ifh1 is a key regulator of yeast ribosomal protein genes. Nature 432:1054-1058.
    • (2004) Nature , vol.432 , pp. 1054-1058
    • Wade, J.T.1    Hall, D.B.2    Struhl, K.3
  • 40
    • 0032793066 scopus 로고    scopus 로고
    • Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae
    • Yu, L., and R. H. Morse. 1999. Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae. Mol. Cell. Biol. 19:5279-5288.
    • (1999) Mol. Cell. Biol. , vol.19 , pp. 5279-5288
    • Yu, L.1    Morse, R.H.2
  • 42
    • 26844489856 scopus 로고    scopus 로고
    • Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
    • Zhang, H., D. N. Roberts, and B. R. Cairns. 2005. Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123:219-231.
    • (2005) Cell , vol.123 , pp. 219-231
    • Zhang, H.1    Roberts, D.N.2    Cairns, B.R.3
  • 43
    • 0037218838 scopus 로고    scopus 로고
    • Autoregulation in the biosynthesis of ribosomes
    • Zhao, Y., J. H. Sohn, and J. R. Warner. 2003. Autoregulation in the biosynthesis of ribosomes. Mol. Cell. Biol. 23:699-707.
    • (2003) Mol. Cell. Biol. , vol.23 , pp. 699-707
    • Zhao, Y.1    Sohn, J.H.2    Warner, J.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.