Characterization and mapping of a shattering mutant in rice that corresponds to a block of domestication genes

Genetics

Volumn 173, Issue 2, 2006, Pages 995-1005

  Ji, Hyeon So ^a   Chu, Sang Ho ^b   Jiang, Wenzhu ^b   Cho, Young Il ^b   Hahn, Jang Ho ^a   Eun, Moo Young ^a   McCouch, Susan R ^c   Koh, Hee Jong ^b  

^a National Institute of Animal Science   (South Korea)

^b Seoul National University   (South Korea)

^c Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

METHYLNITROSOUREA; SONIC HEDGEHOG PROTEIN; VEGETABLE PROTEIN;

ARTICLE; CHROMOSOME 7; CONTROLLED STUDY; GENE MAPPING; GENETIC ANALYSIS; MICROSCOPY; NONHUMAN; PHENOTYPE; PLANT GENETICS; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; RICE; VARIETAS;

AGRICULTURE; BASE SEQUENCE; CHROMOSOME MAPPING; DNA, PLANT; GENES, PLANT; GENES, RECESSIVE; MULTIGENE FAMILY; MUTATION; ORYZA SATIVA; PHENOTYPE; TENSILE STRENGTH;

JAPONICA; ORYZA NIVARA; ZIZANIA;

EID: 33745377554     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.054031     Document Type: Article

References (51)

1. BRES-PATRY, C. M. LORIEUX, G. CLEMENT, M. BANGRATZ AND A. GHESQUIERE, 2001 Heredity and genetic mapping of domestication-related traits in a temperate japonica weedy rice. Theor. Appl. Genet. 102: 118-126.
2. CAI, H. W., and H. MORISHIMA, 2000 Genomic regions affecting seed shattering and seed dormancy in rice. Theor. Appl. Genet. 100: 840-846.
3. CHRISTIANSEN, L. C., F. DAL DEGAN, P. ULVSKOV and B. BORKHARDT, 2002 Examination of the dehiscence zone in soybean pods and isolation of a dehiscence-related endopolygalacturonase gene. Plant Cell Environ. 25: 479-490.
4. COBURN, J. R., S. V. TEMNYKH, E. M. PAUL and S. R. MCCOUCH, 2002 Design and application of microsatellite marker panels for semiautomated genotyping of rice (Oryza sativa L.). Crop Sci. 42: 2092-2099.
5. DEVOS, K. M., 2005 Updating the 'crop circle'. Curr. Opin. Plant Biol. 8: 155-162.
6. DOEBLEY, J., and A. STEC, 1991 Genetic analysis of the morphological differences between maize and teosinte. Genetics 129: 285-295.
7. DOEBLEY, J., and A. STEC, 1993 Inheritance of the morphological differences between maize and teosinte: comparison of results for two F2 populations. Genetics 134: 559-570.
8. EIGUCHI, M., and Y. SANO, 1990 A gene complex responsible for seed shattering and panicle spreading found in common wild rices. Rice Genet. Newsl. 7: 105-107.
9. FERRANDIZ, C., 2002 Regulation of fruit dehiscence in Arabidopsis. J. Exp. Bot. 53: 2031-2038.
10. FERRANDIZ, C., S. J. LILJEGREN and M. F. YANOFSKY, 2000 Negative regulation of the SHATTERPROOF genes by FRUITFULL during Arabidopsis fruit development. Science 289: 436-438.
11. FUKUTA, Y., and T. YAGI, 1998 Mapping of a shattering resistance gene in a mutant line SR-5 induced from an indica rice variety, Nan-jing11. Breed. Sci. 48: 345-348.
12. FUKUTA, Y., H. YOSHIDA, K. FUKUI and A. KOBAYASHI, 1994 Analysis of shattering degrees and abscission layer development in shattering-resistant mutant lines induced from an indica rice (Oryza sativa L.) variety, nan-jing 11. Jpn. J. Breed. 44: 195-200.
13. GU, X. Y., S. F. KIANIAN and M. E. FOLEY, 2004 Multiple loci and epistases control genetic variation for seed dormancy in weedy rice (Oryza sativa). Genetics 166: 1503-1516.
14. GU, X. Y., S. F. KIANIAN, G. A. HARELAND, B. L. HOFFER and M. E. FOLEY, 2005 Genetic analysis of adaptive syndromes interrelated with seed dormancy in weedy rice (Oryza sativa). Theor. Appl. Genet. 110: 1108-1118.
15. JANTASURIYARAT, C., M. I. VALES, C. J. WATSON and O. RIERA-LIZARAZU, 2004 Identification and mapping of genetic loci affecting the free-threshing habit and spike compactness in wheat (Triticum aestivum L.). Theor. Appl. Genet. 108: 261-273.
16. JIN, I. D., 1986 On the formation and development of abscission layer in rice plants, Oryza sativa L. Jpn. J. Crop Sci. 55: 451-457.
17. JIN, I. D., and J. INOUYE, 1982a Relation between grain shedding and pedicel morphology near the abscission layer of japonica-indica hybrid rices bred in Korea. Jpn. J. Crop Sci. 51: 271-275.
18. JIN, I. D., and J. INOUYE, 1982b Relationship between grain shedding and abscission layer in pedicel of japonica-indica hybrid rices in Korea. Jpn. J. Breed. 51: 43-50.
19. JIN, I. D., and J. INOUYE, 1985 On the degree of grain shedding, histological peculiarity of abscission region and esterase isozyme genotype of Bulu and Tjereh rice varieties originated in Indonesia. Jpn. J. Crop Sci. 54: 373-378.
20. JIN, I. D., H. TERAO and J. INOUYE, 1982 On the cracking of abscission layer in Asian rice cultivar (Oryza sativa L.). Jpn. J. Crop Sci. 51: 542-545.
21. JIN, I. D., J. INOUYE and N. N. QUAT, 1990 Histological peculiarities of the abscission layers of African rice, Oryza glaberrima Steud. and its relation with degree of grain shedding. Jpn. J. Crop Sci. 59: 475-480.
22. JIN, I. D., Y. H. BAE and J. INOUYE, 1995 Formation and development of abscission layer between pedicel and rachilla, and changes in grain shedding during ripening in African rice, Oryza glaberrima steud. Korean J. Crop Sci. 40: 103-112.
23. JINN, T. L., J. M. STONE and J. C. WALKER, 2000 HAESA, an Arabidopsis leucine-rich repeat receptor kinase, controls floral organ abscission. Genes Dev. 14: 108-117.
24. KENNARD, C., L. PHILLIPS and A. PORTER, 2002 Genetic dissection of seed shattering, agronomic, and color traits in American wildrice (Zizania palustris var. interior L.) with a comparative map. Theor. Appl. Genet. 105: 1075-1086.
25. KOBAYASHI, A., 1990 Varietal adaptability for mechanized rice cultivation: direct seeding adaptability, shattering habit, smoothness etc. J. Agric. Sci. (Jpn.) 45: 186-189.
26. KOMATSUDA, T., P. MAXIM, N. SENTHIL and Y. MANO, 2004 High-density AFLP map of nonbrittle rachis 1 (btr1) and 2 (btr2) genes in barley (Hordeum vulgare L.). Theor. Appl. Genet. 109: 986-995.
27. KWON, Y. W., and J. C. SHIN, 1980 A study on the changes in grain weight, moisture content, shattering force, milling ratio and apparent physical quality of rice with harvesting time. J. Korean Soc. Crop Sci. 25: 1-9.
28. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. J. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
29. LILJEGREN, S. J., G. S. DITTA, Y. ESHED, B. SAVIDGE, J. L. BOWMAN et al., 2000 SHATTERPROOF MADS-box genes control seed dispersal in Arabidopsis. Nature 404: 766-770.
30. MAO, L., D. BEGUM, H. W. CHUANG, M. A. BUDIMAN, E. J. SZYMKOWIAK et al., 2000 JOINTLESS is a MADS-box gene controlling tomato flower abscission zone development. Nature 406: 910-913.
31. MCCOUCH, S. R., L. TEYTELMAN, Y. XU, K. B. LOBOS, K. CLARE et al., 2002 Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.) (supplement). DNA Res. 9: 257-279.
32. MICHELMORE, R. W., I. PARAN and R. V. KESSELI, 1991 Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 88: 9828-9832.
33. NAGAI, Y. S., P. L. SOBRIZAL, T. SANCHEZ, K. D. KURAKAZU, K. DOI et al., 2002 Sh3, a gene for seed shattering, commonly found in wild rices. Rice Genet. Newsl. 19: 74-75.
34. NAGAO, S., and M. TAKAHASHI, 1963 Trial construction of twelve linkage groups in Japanese rice. J. Fac. Agric. Hokkaido Univ. 53: 72-130.
35. NAGATO, K., and F. M. CHAUNDHRY, 1970 A comparative study of ripening process and kernel development in japonica and indica rice. Proc. Crop Sci. Soc. Jpn. 38: 425-433.
36. OBA, S., F. KIKUCHI and K. MARUYAMA, 1990 Genetic analysis of semidwarfness and grain shattering of Chinese rice [Oryza sativa] variety "Ai-Jio-Nan-Te." Jpn. J. Breed. 40: 13-20.
37. OBA, S., N. SUMI, F. FUJIMOTO and T. YASUE, 1995 Association between grain shattering habit and formation of abscission layer controlled by grain shattering gene sh-2 in rice (Oryza sativa L.). Jpn. J. Crop Sci. 64: 607-615.
38. OSBORNE, D. J., 1989 Abscission. Crit. Rev. Plant Sci. 8: 103-129.
39. PATERSON, A. H., Y.-R. LIN, Z. LI, K. F. SCHERTZ, J. F. DOEBLEY et al., 1995a Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714-1718.
40. PATERSON, A. H., K. F. SCHERTZ, Y. R. LIN, S. C. LIU and Y. L. CHANG, 1995b The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L.) Pers. Proc. Natl. Acad. Sci. USA 92: 6127-6131.
41. PATTERSON, S. E., 2001 Cutting loose: abscission and dehiscence in Arabidopsis. Plant Physiol. 126: 494-500.
42. PONCET, V., E. MARTEL, S. ALLOUIS, K. M. DEVOS, F. LAMY et al., 2002 Comparative analysis of QTLs affecting domestication traits between two domesticated X wild pearl millet (Pennisetum glaucum L., Poaceae) crosses. Theor. Appl. Genet. 104: 965-975.
43. RAJANI, S., and V. SUNDARESAN, 2001 The Arabidopsis myc/bHLH gene ALCATRAZ enables cell separation in fruit dehiscence. Curr. Biol. 11: 1914-1922.
44. ROBERTS, J. A., K. A. ELLIOTT and Z. H. GONZALEZ-CARRANZA, 2002 Abscission, dehiscence, and other cell separation processes. Annu. Rev. Plant Biol. 53: 131-158.
45. ROCK, C. D., and R. S. QUATRANO, 1995 The role of hormones during seed development, pp. 671-697 in Plant Hormones, edited by P. J. DAVIES. Kluwer Academic, Dordrecht, The Netherlands.
46. SARGENT, J., D. OSBORNE and S. DUNFORD, 1984 Cell separation and its hormonal control during fruit abscission in the Gramineae. J. Exp. Bot. 35: 1663-1674.
47. SWEENEY, M., B. PFEIL and S. MCCOUCH, 2006 Rc, a bHLH protein conditioning red pericarp in rice, is orthologous to the maize intensifier1. Plant Cell 18: 283-294.
48. TEMNYKH, S., G. DECLERCK, A. LUKASHOVA, L. LIPOVICH, S. CARTINHOUR et al., 2001 Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res. 11: 1441-1452.
49. THOMSON, M. J., T. H. TAI, A. M. MCCLUNG, X. H. LAI, M. E. HINGA et al., 2003 Mapping quantitative trait loci for yield, yield components and morphological traits in an advanced backcross population between Oryza rufipogon and the Oryza sativa cultivar Jefferson. Theor. Appl. Genet. 107: 479-493.
50. WATANABE, N., and N. IKEBATA, 2000 The effects of homoeologous group 3 chromosomes on grain colour dependent seed dormancy and brittle rachis in tetraploid wheat. Euphytica 115: 215-220.
51. 2 population of a cross between Oryza sativa and O. rufipogon. Theor. Appl. Genet. 98: 243-251.