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Volumn 13, Issue 4, 2006, Pages 897-928

An optimal algorithm for perfect phylogeny haplotyping

Author keywords

Coalescence; Haplotype inference; HapMap; Parsimony; Perfect phylogeny

Indexed keywords

ALGORITHM; ARTICLE; DATA ORDERING; DATA STRUCTURE; FLEXTREE DATA; GENE MAPPING; GENOTYPE; HAPLOTYPE; HAPLOTYPE INFERENCE; HAPMAP PROJECT; HUMAN GENOME PROJECT; INFORMATION PROCESSING; MATHEMATICAL PARAMETERS; PARSIMONY ANALYSIS; PERFECT PHYLOGENY HAPLOTYPING; PHYLOGENETIC TREE; PHYLOGENY; PRIORITY JOURNAL; PROCESS OPTIMIZATION; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 33745289568     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2006.13.897     Document Type: Article
Times cited : (15)

References (27)
  • 1
    • 25444442089 scopus 로고    scopus 로고
    • Comparison of the accuracy of methods of computational haplotype inference using a large empirical dataset
    • Adkins, R. 2004. Comparison of the accuracy of methods of computational haplotype inference using a large empirical dataset. BMC Genet. 3(11), 22.
    • (2004) BMC Genet. , vol.3 , Issue.11 , pp. 22
    • Adkins, R.1
  • 2
    • 8444232868 scopus 로고    scopus 로고
    • A note on efficient computation of haplotypes via perfect phylogeny
    • Bafna, V., Gusfield, D., Hannenhalli, S., and Yooseph, S. 2004. A note on efficient computation of haplotypes via perfect phylogeny. J. Comp. Biol. 11(5), 858-866.
    • (2004) J. Comp. Biol. , vol.11 , Issue.5 , pp. 858-866
    • Bafna, V.1    Gusfield, D.2    Hannenhalli, S.3    Yooseph, S.4
  • 4
    • 0348226177 scopus 로고    scopus 로고
    • The haplotyping problem: An overview of computational models and solutions
    • Bonizzoni, P., Vedova, G.D., Dondi, R., and Li, J. 2003. The haplotyping problem: An overview of computational models and solutions. J. Comput. Sci. Technol. 18(6), 675-688.
    • (2003) J. Comput. Sci. Technol. , vol.18 , Issue.6 , pp. 675-688
    • Bonizzoni, P.1    Vedova, G.D.2    Dondi, R.3    Li, J.4
  • 5
    • 0025269067 scopus 로고
    • Inference of haplotypes from pcr-amplified samples of diploid populations
    • Clark, A.G. 1990. Inference of haplotypes from pcr-amplified samples of diploid populations. Mol. Biol. Evol. 7, 111-122.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 111-122
    • Clark, A.G.1
  • 7
    • 33745312237 scopus 로고    scopus 로고
    • A linear time algorithm for the perfect phylogeny haplotyping (pph) problem
    • Ding, Z., Filkov, V., and Gusfield, D. 2005. A linear time algorithm for the perfect phylogeny haplotyping (pph) problem. RECOMB '05.
    • (2005) RECOMB '05
    • Ding, Z.1    Filkov, V.2    Gusfield, D.3
  • 8
    • 0037701054 scopus 로고    scopus 로고
    • Large scale reconstruction of haplotypes from genotype data
    • Eskin, E., Halperin, E., and Karp, R.M. 2003. Large scale reconstruction of haplotypes from genotype data. RECOMB '05.
    • (2003) RECOMB '05
    • Eskin, E.1    Halperin, E.2    Karp, R.M.3
  • 10
    • 0035943090 scopus 로고    scopus 로고
    • Population genomics: Linkage disequilibrium holds the key
    • Goldstein, D.B., and Weale, M.E. 2002. Population genomics: Linkage disequilibrium holds the key. Curr. Biol. 11, 576-579.
    • (2002) Curr. Biol. , vol.11 , pp. 576-579
    • Goldstein, D.B.1    Weale, M.E.2
  • 11
    • 4143145578 scopus 로고    scopus 로고
    • Model-based inference of haplotype block variation
    • Greenspan, G., and Geiger, D. 2004. Model-based inference of haplotype block variation. J. Comp. Biol. 11(2-3), 493-504.
    • (2004) J. Comp. Biol. , vol.11 , Issue.2-3 , pp. 493-504
    • Greenspan, G.1    Geiger, D.2
  • 13
    • 0034812677 scopus 로고    scopus 로고
    • Inference of haplotypes from samples of diploid populations: Complexity and algorithms
    • Gusfield, D. 2001. Inference of haplotypes from samples of diploid populations: Complexity and algorithms. J. Comp. Biol. 8(3), 305-323.
    • (2001) J. Comp. Biol. , vol.8 , Issue.3 , pp. 305-323
    • Gusfield, D.1
  • 14
    • 0036374329 scopus 로고    scopus 로고
    • Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions
    • Gusfield, D. 2002. Haplotyping as perfect phylogeny: Conceptual framework and efficient solutions. RECOMB '02.
    • (2002) RECOMB '02
    • Gusfield, D.1
  • 15
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • HapMapConsortium. 2003. The International HapMap Project. Nature 426, 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 17
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R., and Kaplan, N. 1985. Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111, 147-165.
    • (1985) Genetics , vol.111 , pp. 147-165
    • Hudson, R.1    Kaplan, N.2
  • 18
    • 85087595798 scopus 로고    scopus 로고
    • Efficient rule-based haplotyping algorithms for pedigree data
    • Li, J., and Jiang, T. 2002. Efficient rule-based haplotyping algorithms for pedigree data. RECOMB '02.
    • (2002) RECOMB '02
    • Li, J.1    Jiang, T.2
  • 20
    • 0036138183 scopus 로고    scopus 로고
    • Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms
    • Niu, T., Qin, Z.S., Xu, X., and Liu, J.S. 2003. Bayesian haplotype inference for multiple linked single-nucleotide polymorphisms. Am. J. Human Genet. 70, 157-169.
    • (2003) Am. J. Human Genet. , vol.70 , pp. 157-169
    • Niu, T.1    Qin, Z.S.2    Xu, X.3    Liu, J.S.4
  • 21
    • 0036844521 scopus 로고    scopus 로고
    • Partition-ligation-expectation-maximization algorithm for haplotype inference with single-necleotide polymorphisms
    • Qin, Z.S., Niu, T., and Liu, J.S. 2002. Partition-ligation-expectation- maximization algorithm for haplotype inference with single-necleotide polymorphisms. Am. J. Human Genet., 1242-1247.
    • (2002) Am. J. Human Genet. , pp. 1242-1247
    • Qin, Z.S.1    Niu, T.2    Liu, J.S.3
  • 23
    • 33745301284 scopus 로고    scopus 로고
    • An efficient algorithm for perfect phylogeny haplotyping
    • VijayaSatya, R., and Mukherjee, A. 2005a. An efficient algorithm for perfect phylogeny haplotyping. Proc. CSB 2005, 103-110.
    • (2005) Proc. CSB 2005 , pp. 103-110
    • Vijayasatya, R.1    Mukherjee, A.2
  • 25
    • 1642360208 scopus 로고    scopus 로고
    • Inference on recombination and block structure using unphased data
    • Wiuf, C. 2004. Inference on recombination and block structure using unphased data. Genetics 166(1), 537-545.
    • (2004) Genetics , vol.166 , Issue.1 , pp. 537-545
    • Wiuf, C.1
  • 26
    • 2442658957 scopus 로고    scopus 로고
    • Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies
    • Zhang, K., Qin, Z., Liu, J., Chen, T., Waterman, M., and Sun, F. 2004. Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies. Genome Res. 14(5), 908-916.
    • (2004) Genome Res. , vol.14 , Issue.5 , pp. 908-916
    • Zhang, K.1    Qin, Z.2    Liu, J.3    Chen, T.4    Waterman, M.5    Sun, F.6
  • 27
    • 0038376921 scopus 로고    scopus 로고
    • Dynamic programming algorithms for haplotype block partitioning: Applications to human chromosome 21 haplotype data
    • Zhang, K., Sun, F., Waterman, M.S., and Chen, T. 2003. Dynamic programming algorithms for haplotype block partitioning: Applications to human chromosome 21 haplotype data. RECOMB '03.
    • (2003) RECOMB '03
    • Zhang, K.1    Sun, F.2    Waterman, M.S.3    Chen, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.