-
1
-
-
0042622395
-
NCI: A server to identify non-canonical interactions in protein structures
-
Babu, M. M. (2003). NCI: A server to identify non-canonical interactions in protein structures. Nucleic Acids Res. 31, 3345-3348.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3345-3348
-
-
Babu, M.M.1
-
2
-
-
0037183788
-
A C-H⋯O hydrogen bond stabilized polypeptide chain reversal motif at the C terminus of helices in proteins
-
Babu, M. M., Singh, S. K. and Balaram, P. (2002). A C-H⋯O hydrogen bond stabilized polypeptide chain reversal motif at the C terminus of helices in proteins. J. Mol. Biol. 322, 871-880.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 871-880
-
-
Babu, M.M.1
Singh, S.K.2
Balaram, P.3
-
4
-
-
0035896007
-
C-H⋯π interactions in proteins
-
Brandl, M., Weiss, M. S., Jabs, A., Sühnel, J. and Hilgenfeld, R. (2001). C-H⋯π interactions in proteins. J. Mol. Biol. 307, 357-377.
-
(2001)
J. Mol. Biol.
, vol.307
, pp. 357-377
-
-
Brandl, M.1
Weiss, M.S.2
Jabs, A.3
Sühnel, J.4
Hilgenfeld, R.5
-
5
-
-
0002425179
-
PROSET - A fast procedure to create non-redundant sets of protein sequences
-
Brendel, V. (1992). PROSET - a fast procedure to create non-redundant sets of protein sequences. Mathl. Comput. Modelling 16, 37-43.
-
(1992)
Mathl. Comput. Modelling
, vol.16
, pp. 37-43
-
-
Brendel, V.1
-
6
-
-
0022450133
-
Amino-aromatic interactions in proteins
-
Burley, S. K. and Petsko, G. A. (1986). Amino-aromatic interactions in proteins. FEBS Letters 203, 139-143.
-
(1986)
FEBS Letters
, vol.203
, pp. 139-143
-
-
Burley, S.K.1
Petsko, G.A.2
-
7
-
-
0032509022
-
C-H⋯O hydrogen bond involving proline residues in α-helices
-
Chakrabarti, P. and Chakrabarti, S. (1998). C-H⋯O hydrogen bond involving proline residues in α-helices. J. Mol. Biol. 284, 867-873.
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 867-873
-
-
Chakrabarti, P.1
Chakrabarti, S.2
-
8
-
-
0036385820
-
Evaluation of C-H⋯O hydrogen bonds in native and misfolded proteins
-
Chamberlain, A. K. and Bowie, J. U. (2002). Evaluation of C-H⋯O hydrogen bonds in native and misfolded proteins. J. Mol. Biol. 322, 497-503.
-
(2002)
J. Mol. Biol.
, vol.322
, pp. 497-503
-
-
Chamberlain, A.K.1
Bowie, J.U.2
-
9
-
-
0034327349
-
Prediction of tight turns and their types in proteins
-
Chou, K. C. (2000). Prediction of tight turns and their types in proteins. Analyt. Biochem. 286, 1-16.
-
(2000)
Analyt. Biochem.
, vol.286
, pp. 1-16
-
-
Chou, K.C.1
-
10
-
-
0003425407
-
Biostatistics: A foundation for analysis in the health science
-
John Wiley & Sons
-
Daniel, W. W. (1987). Biostatistics: A foundation for analysis in the health science. John Wiley & Sons.
-
(1987)
-
-
Daniel, W.W.1
-
11
-
-
0028168468
-
(His)Ce-H⋯O=C < hydrogen bond in the active sites of serine hydrolases
-
Derewenda, Z. S., Derewenda, U. and Kobos, P. (1994). (His Ce-H⋯O=C < hydrogen bond in the active sites of serine hydrolases. J. Mol. Biol. 241, 83-93.
-
(1994)
J. Mol. Biol.
, vol.241
, pp. 83-93
-
-
Derewenda, Z.S.1
Derewenda, U.2
Kobos, P.3
-
12
-
-
0028978764
-
The occurrence of C-H⋯O hydrogen bonds in proteins
-
Derewenda, Z. S., Lee, L. and Derewenda, U. (1995). The occurrence of C-H⋯O hydrogen bonds in proteins. J. Mol. Biol. 252, 248-262.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 248-262
-
-
Derewenda, Z.S.1
Lee, L.2
Derewenda, U.3
-
14
-
-
0007116617
-
The C-H⋯O hydrogen bond in crystals: What is it?
-
Desiraju, G. R. (1991). The C-H⋯O hydrogen bond in crystals: What is it? Acc. Chem. Res. 24, 290-296.
-
(1991)
Acc. Chem. Res.
, vol.24
, pp. 290-296
-
-
Desiraju, G.R.1
-
15
-
-
0031008010
-
C-H⋯O hydrogen bonds in β sheets
-
Fabiola, G. F., Krishnaswamy, S., Nagarajan, V. and Pattabhi, V. (1997). C-H⋯O hydrogen bonds in β sheets. Acta Crystallogr. D Biol. Crystallogr. 53, 316-320.
-
(1997)
Acta Crystallogr. D Biol. Crystallogr.
, vol.53
, pp. 316-320
-
-
Fabiola, G.F.1
Krishnaswamy, S.2
Nagarajan, V.3
Pattabhi, V.4
-
16
-
-
0003766353
-
Hydrogen bonding in Biological Structures
-
Springer-Verlag, NY
-
Jeffrey, G. A. and Saenger, W. (1991). Hydrogen bonding in Biological Structures, Springer-Verlag, NY.
-
(1991)
-
-
Jeffrey, G.A.1
Saenger, W.2
-
17
-
-
0033578684
-
Protein secondary structure prediction based on position specific scoring matrices
-
Jones, D. T. (1999). Protein secondary structure prediction based on position specific scoring matrices. J. Mol. Biol. 292, 195-202.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 195-202
-
-
Jones, D.T.1
-
18
-
-
0037372098
-
Prediction of β-turns in proteins from multiple alignment using neural network
-
Kaur, H. and Raghava, G. P. S. (2003a). Prediction of β-turns in proteins from multiple alignment using neural network. Protein Sci. 12, 627-634.
-
(2003)
Protein Sci.
, vol.12
, pp. 627-634
-
-
Kaur, H.1
Raghava, G.P.S.2
-
19
-
-
0037407019
-
A neural network based method for prediction of γ-turns in proteins from multiple sequence alignment
-
Kaur, H. and Raghava, G. P. S. (2003b). A neural network based method for prediction of γ-turns in proteins from multiple sequence alignment. Protein Sci. 12, 923-929.
-
(2003)
Protein Sci.
, vol.12
, pp. 923-929
-
-
Kaur, H.1
Raghava, G.P.S.2
-
20
-
-
1442349113
-
Prediction of α-turns in proteins using PSI-BLAST profiles and secondary structure information
-
Kaur, H. and Raghava, G. P. S. (2004). Prediction of α-turns in proteins using PSI-BLAST profiles and secondary structure information. Proteins 55, 83-90.
-
(2004)
Proteins
, vol.55
, pp. 83-90
-
-
Kaur, H.1
Raghava, G.P.S.2
-
21
-
-
0029907998
-
HBexplore - A new tool for identifying hydrogen bonding patterns in biological macromolecules
-
Lindauer, K., Bendic, C. and Sühnel, J. (1996). HBexplore - a new tool for identifying hydrogen bonding patterns in biological macromolecules. Comput. Appl. Biosci. 12, 281-289.
-
(1996)
Comput. Appl. Biosci.
, vol.12
, pp. 281-289
-
-
Lindauer, K.1
Bendic, C.2
Sühnel, J.3
-
23
-
-
0016772212
-
Comparison of the predicted and observed secondary structure of T4 phage lysozyme
-
Matthews, B. W. (1975). Comparison of the predicted and observed secondary structure of T4 phage lysozyme. Biochim. Biophys. Acta 405, 442-451.
-
(1975)
Biochim. Biophys. Acta
, vol.405
, pp. 442-451
-
-
Matthews, B.W.1
-
24
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin, A. G., Brenner, S. E., Hubbard, T. and Chothia, C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
25
-
-
0003505803
-
The CH/π Interaction. Evidence, Nature and Consequences
-
Wiley-VCH, New York
-
Nishio, M., Hirota, M. and Umezawa, Y. (1998). The CH/π Interaction. Evidence, Nature and Consequences. Wiley-VCH, New York.
-
(1998)
-
-
Nishio, M.1
Hirota, M.2
Umezawa, Y.3
-
27
-
-
0035237804
-
Improved prediction of the number of residue contacts in proteins by recurrent neural networks
-
Pollastri, G., Baldi, P., Fariselli, P. and Casadio, R. (2001). Improved prediction of the number of residue contacts in proteins by recurrent neural networks. Bioinformatics 17, S234-S242.
-
(2001)
Bioinformatics
, vol.17
-
-
Pollastri, G.1
Baldi, P.2
Fariselli, P.3
Casadio, R.4
-
28
-
-
0027291015
-
Prediction of protein secondary structure at better than 70% accuracy
-
Rost, B. and Sander, C. (1993). Prediction of protein secondary structure at better than 70% accuracy. J. Mol. Biol. 232, 584-599.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 584-599
-
-
Rost, B.1
Sander, C.2
-
29
-
-
0022471098
-
Learning representations by back-propagation errors
-
Rumelhart, D. E., Hinton, G. E. and Williams, R. J. (1986). Learning representations by back-propagation errors. Nature 323, 533-536.
-
(1986)
Nature
, vol.323
, pp. 533-536
-
-
Rumelhart, D.E.1
Hinton, G.E.2
Williams, R.J.3
-
30
-
-
0032900496
-
Prediction of the location and type of b-turns in proteins using neural networks
-
Shepherd, A. J., Gorse, D. and Thornton, J. M. (1999). Prediction of the location and type of b-turns in proteins using neural networks. Protein Sci. 8, 1045-1055.
-
(1999)
Protein Sci.
, vol.8
, pp. 1045-1055
-
-
Shepherd, A.J.1
Gorse, D.2
Thornton, J.M.3
-
31
-
-
33748962203
-
Chymotrypsin inhibitory conformation induced by amino acid side-chain side-chain intramolecular CH/π interaction
-
1996
-
Shimohigashi, Y., Maeda, I., Nose, T., Ikesue, K., Sakamoto, H., Ogawa, T., Ide, Y. and Kawahara, M. (1996). Chymotrypsin inhibitory conformation induced by amino acid side-chain side-chain intramolecular CH/π interaction. J. Chem. Soc. Perkin Trans. 1 1996, 2479-2485.
-
(1996)
J. Chem. Soc. Perkin Trans.
, vol.1
, pp. 2479-2485
-
-
Shimohigashi, Y.1
Maeda, I.2
Nose, T.3
Ikesue, K.4
Sakamoto, H.5
Ogawa, T.6
Ide, Y.7
Kawahara, M.8
-
32
-
-
0033057870
-
Design of serine protease inhibitors with conformation restricted by amino acid side-chain side-chain CH/π interaction
-
Shimohigashi, Y., Nose, T., Yamauchi, Y. and Maeda, I. (1999). Design of serine protease inhibitors with conformation restricted by amino acid side-chain side-chain CH/π interaction. Biopolymers 51, 9-17.
-
(1999)
Biopolymers
, vol.51
, pp. 9-17
-
-
Shimohigashi, Y.1
Nose, T.2
Yamauchi, Y.3
Maeda, I.4
-
33
-
-
0035910278
-
Hydrogen bonds with pi-acceptors in proteins: Frequencies and role in stabilizing local 3D structures
-
Steiner, T. and Koellner, G. (2001). Hydrogen bonds with pi-acceptors in proteins: Frequencies and role in stabilizing local 3D structures. J. Mol. Biol. 305, 535-557.
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 535-557
-
-
Steiner, T.1
Koellner, G.2
-
34
-
-
0342580086
-
The ordered water cluster in vitamin B12 coenzyme at 15K is stabilized by C-H⋯O hydrogen bonds
-
Steiner, T. and Saenger, W. (1993). The ordered water cluster in vitamin B12 coenzyme at 15K is stabilized by C-H⋯O hydrogen bonds. Acta Crystallogr. D Biol. Crystallogr. 49, 592-593.
-
(1993)
Acta Crystallogr. D Biol. Crystallogr.
, vol.49
, pp. 592-593
-
-
Steiner, T.1
Saenger, W.2
-
35
-
-
33845554708
-
Crystallographic evidence for the existence of C-H⋯O, C-H⋯N and C-H⋯Cl hydrogen bonds
-
Taylor, R. and Kennard, O. (1982). Crystallographic evidence for the existence of C-H⋯O, C-H⋯N and C-H⋯Cl hydrogen bonds. J. Am. Chem. Soc. 104, 5063-5070.
-
(1982)
J. Am. Chem. Soc.
, vol.104
, pp. 5063-5070
-
-
Taylor, R.1
Kennard, O.2
-
36
-
-
0037487158
-
Significance of aromatic-backbone amide interactions in protein structure
-
Toth, G., Watts, C. R., Murphy, R. F. and Lovas, S. (2001). Significance of aromatic-backbone amide interactions in protein structure. Proteins 43, 373-381.
-
(2001)
Proteins
, vol.43
, pp. 373-381
-
-
Toth, G.1
Watts, C.R.2
Murphy, R.F.3
Lovas, S.4
-
37
-
-
0002774623
-
Ab-initio molecular studies on C-H⋯hydrogen bonded systems
-
Vishveshwara, S. (1978). Ab-initio molecular studies on C-H⋯hydrogen bonded systems. Chem. Phys. Lett. 59, 26-29.
-
(1978)
Chem. Phys. Lett.
, vol.59
, pp. 26-29
-
-
Vishveshwara, S.1
-
38
-
-
0035449064
-
More hydrogen bonds for the (structural) biologist
-
Weiss, M. S., Brandl, M., Sühnel, J., Pal, D. and Hilgenfeld, R. (2001). More hydrogen bonds for the (structural) biologist. Trends Biochem. Sci. 26, 521-523.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 521-523
-
-
Weiss, M.S.1
Brandl, M.2
Sühnel, J.3
Pal, D.4
Hilgenfeld, R.5
-
39
-
-
0003421109
-
Stuttgart neural network simulator
-
version 4.2. University of Stuttgart, Stuttgart, Germany
-
Zell, A. and Mamier, G. (1997). Stuttgart neural network simulator, version 4.2. University of Stuttgart, Stuttgart, Germany.
-
(1997)
-
-
Zell, A.1
Mamier, G.2
-
40
-
-
0026771388
-
Hybrid system for protein secondary structure prediction
-
Zhang, X., Mesirov, J. P. and Waltz, D. L. (1992). Hybrid system for protein secondary structure prediction. J. Mol. Biol. 225, 1049-1063.
-
(1992)
J. Mol. Biol.
, vol.225
, pp. 1049-1063
-
-
Zhang, X.1
Mesirov, J.P.2
Waltz, D.L.3
|