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Volumn 12, Issue 5, 2003, Pages 923-929

A neural-network based method for prediction of γ-turns in proteins from multiple sequence alignment

Author keywords

< Turns; Multiple alignment; Neural networks; Prediction; Secondary structure; Statistical; Web server; Weka classifiers

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; ARTIFICIAL NEURAL NETWORK; BETA SHEET; CORRELATION COEFFICIENT; MOLECULAR DYNAMICS; PREDICTION; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN STRUCTURE; RECEIVER OPERATING CHARACTERISTIC; STATISTICAL ANALYSIS; VALIDATION PROCESS;

EID: 0037407019     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1110/ps.0241703     Document Type: Article
Times cited : (70)

References (24)
  • 3
    • 0014467163 scopus 로고
    • Conformational studies of peptide systems. The rotational states of the NH - CH fragment of alanine dipeptides by nuclear magnetic resonance
    • Bystrov, V.F., Portnova, S.L., Tsetlin, V.I., Ivanov, V.T., and Ochinnikov, Y.A. 1969. Conformational studies of peptide systems. The rotational states of the NH - CH fragment of alanine dipeptides by nuclear magnetic resonance. Tetrahedron 25: 493-515.
    • (1969) Tetrahedron , vol.25 , pp. 493-515
    • Bystrov, V.F.1    Portnova, S.L.2    Tsetlin, V.I.3    Ivanov, V.T.4    Ochinnikov, Y.A.5
  • 4
    • 0031542497 scopus 로고    scopus 로고
    • Prediction and classification of α-turn types
    • Chou, K.C. 1997a. Prediction and classification of α-turn types. Biopolymers 42: 837-853.
    • (1997) Biopolymers , vol.42 , pp. 837-853
    • Chou, K.C.1
  • 5
    • 0030963006 scopus 로고    scopus 로고
    • Prediction of β-turns
    • -. 1997b. Prediction of β-turns. J. Pept. Res. 49: 120-144.
    • (1997) J. Pept. Res. , vol.49 , pp. 120-144
  • 6
    • 0034327349 scopus 로고    scopus 로고
    • Prediction of tight turns and their types in proteins
    • -. 2000. Prediction of tight turns and their types in proteins. Analyt. Biochem. 286: 1-16.
    • (2000) Analyt. Biochem. , vol.286 , pp. 1-16
  • 7
    • 0030808140 scopus 로고    scopus 로고
    • Classification and prediction of β-turn types
    • Chou, K.C., and Blinn, J.R. 1997. Classification and prediction of β-turn types. J. Protein Chem. 16: 575-595.
    • (1997) J. Protein Chem. , vol.16 , pp. 575-595
    • Chou, K.C.1    Blinn, J.R.2
  • 9
    • 0031269184 scopus 로고    scopus 로고
    • On the optimality of the simple Bayesian classifier under zero-one loss
    • Domingos, P. and Pazzani, M. 1997. On the optimality of the simple Bayesian classifier under zero-one loss. Machine Learning 29: 103-130.
    • (1997) Machine Learning , vol.29 , pp. 103-130
    • Domingos, P.1    Pazzani, M.2
  • 10
    • 0017873321 scopus 로고
    • Analysis and implications of simple methods for predicting the secondary structure of globular proteins
    • Garnier, J., Osguthorpe, D.J., and Robinson, B. 1978. Analysis and implications of simple methods for predicting the secondary structure of globular proteins. J. Mol. Biol. 120: 97-120.
    • (1978) J. Mol. Biol. , vol.120 , pp. 97-120
    • Garnier, J.1    Osguthorpe, D.J.2    Robinson, B.3
  • 11
    • 0023555768 scopus 로고
    • Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs
    • Gibrat, J.-F., Garnier, J., and Robson, B. 1987. Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs. J. Mol. Biol. 198: 425-443.
    • (1987) J. Mol. Biol. , vol.198 , pp. 425-443
    • Gibrat, J.-F.1    Garnier, J.2    Robson, B.3
  • 12
    • 0033752859 scopus 로고    scopus 로고
    • β- and γ-turns in proteins revisited: A new set of amino acid dependent positional preferences and potential
    • Guruprasad, K. and Rajkumar, S. 2000. β- and γ-turns in proteins revisited: A new set of amino acid dependent positional preferences and potential. J. Biosci. 25: 143-156.
    • (2000) J. Biosci. , vol.25 , pp. 143-156
    • Guruprasad, K.1    Rajkumar, S.2
  • 14
    • 0030039296 scopus 로고    scopus 로고
    • PROMOTIF - A program to identify and analyze structural motifs in proteins
    • Hutchinson, E.G. and Thornton, J.M. 1996. PROMOTIF - A program to identify and analyze structural motifs in proteins. Protein Sci. 5: 212-220.
    • (1996) Protein Sci. , vol.5 , pp. 212-220
    • Hutchinson, E.G.1    Thornton, J.M.2
  • 15
    • 0033578684 scopus 로고    scopus 로고
    • Protein secondary structure prediction based on position-specific scoring matrices
    • Jones, D.T. 1999. Protein secondary structure prediction based on position-specific scoring matrices. J. Mol. Biol. 292: 195-202.
    • (1999) J. Mol. Biol. , vol.292 , pp. 195-202
    • Jones, D.T.1
  • 16
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch, W. and Sander, C. 1983. Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 17
    • 0036203117 scopus 로고    scopus 로고
    • BetaTPred-prediction of β-turns in a protein using statistical algorithms
    • Kaur, H. and Raghava, G.P.S. 2002a. BetaTPred-prediction of β-turns in a protein using statistical algorithms. Bioinformatics 18: 498-499.
    • (2002) Bioinformatics , vol.18 , pp. 498-499
    • Kaur, H.1    Raghava, G.P.S.2
  • 18
    • 0036855904 scopus 로고    scopus 로고
    • An evaluation of β-turn prediction methods
    • -. 2002b. An evaluation of β-turn prediction methods. Bioinformatics 18: 1508-1514.
    • (2002) Bioinformatics , vol.18 , pp. 1508-1514
  • 19
    • 0037372098 scopus 로고    scopus 로고
    • Prediction of β-turns in proteins from multiple alignment using neural network
    • -. 2003. Prediction of β-turns in proteins from multiple alignment using neural network. Protein Sci. 12: 627-634.
    • (2003) Protein Sci. , vol.12 , pp. 627-634
  • 21
    • 0022471098 scopus 로고
    • Learning representations by back-propagation errors
    • Rumelhart, D.E., Hinton, G.E., and Williams, R.J. 1986. Learning representations by back-propagation errors. Nature 323: 533-536.
    • (1986) Nature , vol.323 , pp. 533-536
    • Rumelhart, D.E.1    Hinton, G.E.2    Williams, R.J.3
  • 22
    • 0032900496 scopus 로고    scopus 로고
    • Prediction of the location and type of β-turn types in proteins using neural networks
    • Shepherd, A.-J., Gorse, D., and Thornton, J.M. 1999. Prediction of the location and type of β-turn types in proteins using neural networks. Protein Sci. 8: 1045-1055.
    • (1999) Protein Sci. , vol.8 , pp. 1045-1055
    • Shepherd, A.-J.1    Gorse, D.2    Thornton, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.