-
1
-
-
0023839680
-
Expression of human DNA polymerase β in Escherichia coli and characterization of the recombinant enzyme
-
Abbotts J., Sen Gupta D.N., Zmudzka B., Widen S.G., Notario V., and Wilson S.H. Expression of human DNA polymerase β in Escherichia coli and characterization of the recombinant enzyme. Biochemistry 27 (1988) 901-909
-
(1988)
Biochemistry
, vol.27
, pp. 901-909
-
-
Abbotts, J.1
Sen Gupta, D.N.2
Zmudzka, B.3
Widen, S.G.4
Notario, V.5
Wilson, S.H.6
-
2
-
-
0028803178
-
Purification and domain-mapping of mammalian DNA polymerase β
-
Beard W.A., and Wilson S.H. Purification and domain-mapping of mammalian DNA polymerase β. Methods Enzymol. 262 (1995) 98-107
-
(1995)
Methods Enzymol.
, vol.262
, pp. 98-107
-
-
Beard, W.A.1
Wilson, S.H.2
-
4
-
-
0037566670
-
Structural insights into the origins of DNA polymerase fidelity
-
Beard W.A., and Wilson S.H. Structural insights into the origins of DNA polymerase fidelity. Structure 11 (2003) 489-496
-
(2003)
Structure
, vol.11
, pp. 489-496
-
-
Beard, W.A.1
Wilson, S.H.2
-
5
-
-
3843122085
-
Influence of DNA structure on DNA polymerase β active site function: Extension of mutagenic DNA intermediates
-
Beard W.A., Shock D.D., and Wilson S.H. Influence of DNA structure on DNA polymerase β active site function: Extension of mutagenic DNA intermediates. J. Biol. Chem. 279 (2004) 31921-31929
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 31921-31929
-
-
Beard, W.A.1
Shock, D.D.2
Wilson, S.H.3
-
6
-
-
0037032998
-
Efficiency of correct nucleotide insertion governs DNA polymerase fidelity
-
Beard W.A., Shock D.D., Vande Berg B.J., and Wilson S.H. Efficiency of correct nucleotide insertion governs DNA polymerase fidelity. J. Biol. Chem. 277 (2002) 47393-47398
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 47393-47398
-
-
Beard, W.A.1
Shock, D.D.2
Vande Berg, B.J.3
Wilson, S.H.4
-
7
-
-
0031985891
-
Impairment of proliferating cell nuclear antigen-dependent apurinic/apyrimidinic site repair on linear DNA
-
Biade S., Sobol R.W., Wilson S.H., and Matsumoto Y. Impairment of proliferating cell nuclear antigen-dependent apurinic/apyrimidinic site repair on linear DNA. J. Biol. Chem. 273 (1998) 898-902
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 898-902
-
-
Biade, S.1
Sobol, R.W.2
Wilson, S.H.3
Matsumoto, Y.4
-
9
-
-
0025040632
-
An attempt to unify structures of polymerases
-
Delarue M., Poch O., Tordo N., Moras D., and Argos P. An attempt to unify structures of polymerases. Protein Eng. 3 (1990) 461-467
-
(1990)
Protein Eng.
, vol.3
, pp. 461-467
-
-
Delarue, M.1
Poch, O.2
Tordo, N.3
Moras, D.4
Argos, P.5
-
10
-
-
0034615978
-
Mapping of the 5′-2-deoxyribose-5-phosphate lyase active site in DNA polymerase β by mass spectrometry
-
Deterding L.J., Prasad R., Mullen G.P., Wilson S.H., and Tomer K.B. Mapping of the 5′-2-deoxyribose-5-phosphate lyase active site in DNA polymerase β by mass spectrometry. J. Biol. Chem. 275 (2000) 10463-10471
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 10463-10471
-
-
Deterding, L.J.1
Prasad, R.2
Mullen, G.P.3
Wilson, S.H.4
Tomer, K.B.5
-
11
-
-
0242299709
-
Monitoring base excision repair by in vitro assays
-
Dianov G.L. Monitoring base excision repair by in vitro assays. Toxicology 193 (2003) 35-41
-
(2003)
Toxicology
, vol.193
, pp. 35-41
-
-
Dianov, G.L.1
-
12
-
-
0033600570
-
Replication protein A stimulates proliferating cell nuclear antigen-dependent repair of abasic sites in DNA by human cell extracts
-
Dianov G.L., Jensen B.R., Kenny M.K., and Bohr V.A. Replication protein A stimulates proliferating cell nuclear antigen-dependent repair of abasic sites in DNA by human cell extracts. Biochemistry 38 (1999) 11021-11025
-
(1999)
Biochemistry
, vol.38
, pp. 11021-11025
-
-
Dianov, G.L.1
Jensen, B.R.2
Kenny, M.K.3
Bohr, V.A.4
-
13
-
-
0032493309
-
Deoxyribose phosphate excision by the N-terminal domain of the polymerase β: The mechanism revisited
-
Feng J.-A., Crasto C.J., and Matsumoto Y. Deoxyribose phosphate excision by the N-terminal domain of the polymerase β: The mechanism revisited. Biochemistry 37 (1998) 9605-9611
-
(1998)
Biochemistry
, vol.37
, pp. 9605-9611
-
-
Feng, J.-A.1
Crasto, C.J.2
Matsumoto, Y.3
-
14
-
-
0032539979
-
Different DNA polymerases are involved in the short- and long-patch base excision repair in mammalian cells
-
Fortini P., Pascucci B., Parlanti E., Sobol R.W., Wilson S.H., and Dogliotti E. Different DNA polymerases are involved in the short- and long-patch base excision repair in mammalian cells. Biochemistry 37 (1998) 3575-3580
-
(1998)
Biochemistry
, vol.37
, pp. 3575-3580
-
-
Fortini, P.1
Pascucci, B.2
Parlanti, E.3
Sobol, R.W.4
Wilson, S.H.5
Dogliotti, E.6
-
16
-
-
0025771210
-
Ribozyme-catalyzed and nonenzymatic reactions of phosphate diesters: Rate effects upon substitution of sulfur for a nonbridging phosphoryl oxygen atom
-
Herschlag D., Piccirilli J.A., and Cech T.R. Ribozyme-catalyzed and nonenzymatic reactions of phosphate diesters: Rate effects upon substitution of sulfur for a nonbridging phosphoryl oxygen atom. Biochemistry 30 (1991) 4844-4854
-
(1991)
Biochemistry
, vol.30
, pp. 4844-4854
-
-
Herschlag, D.1
Piccirilli, J.A.2
Cech, T.R.3
-
17
-
-
0034695632
-
Protection against methylation-induced cytotoxicity by DNA polymerase β-dependent long patch base excision repair
-
Horton J.K., Prasad R., Hou E., and Wilson S.H. Protection against methylation-induced cytotoxicity by DNA polymerase β-dependent long patch base excision repair. J. Biol. Chem. 275 (2000) 2211-2218
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 2211-2218
-
-
Horton, J.K.1
Prasad, R.2
Hou, E.3
Wilson, S.H.4
-
18
-
-
0642315208
-
Transient-state kinetic analysis of enzyme reaction pathways
-
Sigman D.S. (Ed), Academic Press, New York
-
Johnson K.A. Transient-state kinetic analysis of enzyme reaction pathways. In: Sigman D.S. (Ed). "The Enzymes: Mechanisms of Catalysis" Vol. XX (1992), Academic Press, New York 1-61
-
(1992)
"The Enzymes: Mechanisms of Catalysis"
, vol.XX
, pp. 1-61
-
-
Johnson, K.A.1
-
19
-
-
8544278025
-
DNA polymerase fidelity: Kinetics, structure, and checkpoints
-
Joyce C.M., and Benkovic S.J. DNA polymerase fidelity: Kinetics, structure, and checkpoints. Biochemistry 43 (2004) 14317-14324
-
(2004)
Biochemistry
, vol.43
, pp. 14317-14324
-
-
Joyce, C.M.1
Benkovic, S.J.2
-
20
-
-
0037799257
-
Rapid segmental and subdomain motions of DNA polymerase β
-
Kim S.-J., Beard W.A., Harvey J., Shock D.D., Knutson J.R., and Wilson S.H. Rapid segmental and subdomain motions of DNA polymerase β. J. Biol. Chem. 278 (2003) 5072-5081
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 5072-5081
-
-
Kim, S.-J.1
Beard, W.A.2
Harvey, J.3
Shock, D.D.4
Knutson, J.R.5
Wilson, S.H.6
-
21
-
-
0030957997
-
Second pathway for completion of human DNA base excision-repair: Reconstitution with purified proteins and requirement for DNase IV (FEN1)
-
Klungland A., and Lindahl T. Second pathway for completion of human DNA base excision-repair: Reconstitution with purified proteins and requirement for DNase IV (FEN1). EMBO J. 16 (1997) 3341-3348
-
(1997)
EMBO J.
, vol.16
, pp. 3341-3348
-
-
Klungland, A.1
Lindahl, T.2
-
22
-
-
0029028964
-
Excision of deoxyribose phosphate residues by DNA polymerase β during DNA repair
-
Matsumoto Y., and Kim K. Excision of deoxyribose phosphate residues by DNA polymerase β during DNA repair. Science 269 (1995) 699-702
-
(1995)
Science
, vol.269
, pp. 699-702
-
-
Matsumoto, Y.1
Kim, K.2
-
23
-
-
0033597779
-
Base substitution specificity of DNA polymerase β depends on interactions in the DNA minor groove
-
Osheroff W.P., Beard W.A., Wilson S.H., and Kunkel T.A. Base substitution specificity of DNA polymerase β depends on interactions in the DNA minor groove. J. Biol. Chem. 274 (1999) 20749-20752
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 20749-20752
-
-
Osheroff, W.P.1
Beard, W.A.2
Wilson, S.H.3
Kunkel, T.A.4
-
24
-
-
0344527720
-
The fidelity of DNA polymerase β during distributive and processive DNA synthesis
-
Osheroff W.P., Jung H.K., Beard W.A., Wilson S.H., and Kunkel T.A. The fidelity of DNA polymerase β during distributive and processive DNA synthesis. J. Biol. Chem. 274 (1999) 3642-3650
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 3642-3650
-
-
Osheroff, W.P.1
Jung, H.K.2
Beard, W.A.3
Wilson, S.H.4
Kunkel, T.A.5
-
25
-
-
0034142142
-
Molecular cloning and high-level expression of human polymerase β cDNA and comparison of the purified recombinant human and rat enzymes
-
Patterson T.A., Little W., Cheng X., Widen S.G., Kumar A., Beard W.A., and Wilson S.H. Molecular cloning and high-level expression of human polymerase β cDNA and comparison of the purified recombinant human and rat enzymes. Protein Expr. Purif. 18 (2000) 100-110
-
(2000)
Protein Expr. Purif.
, vol.18
, pp. 100-110
-
-
Patterson, T.A.1
Little, W.2
Cheng, X.3
Widen, S.G.4
Kumar, A.5
Beard, W.A.6
Wilson, S.H.7
-
26
-
-
0029892846
-
Evidence for an imino intermediate in the DNA polymerase β deoxyribose phosphate excision reaction
-
Piersen C.E., Prasad R., Wilson S.H., and Lloyd R.S. Evidence for an imino intermediate in the DNA polymerase β deoxyribose phosphate excision reaction. J. Biol. Chem. 271 (1996) 17811-17815
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 17811-17815
-
-
Piersen, C.E.1
Prasad, R.2
Wilson, S.H.3
Lloyd, R.S.4
-
27
-
-
27844562272
-
Structural insight into the DNA polymertase β deoxyribose phosphate lyase mechanism
-
Prasad R., Batra V.K., Yang X.-P., Krahn J.M., Pedersen L.C., Beard W.A., and Wilson S.H. Structural insight into the DNA polymertase β deoxyribose phosphate lyase mechanism. DNA Repair 4 (2005) 1347-1357
-
(2005)
DNA Repair
, vol.4
, pp. 1347-1357
-
-
Prasad, R.1
Batra, V.K.2
Yang, X.-P.3
Krahn, J.M.4
Pedersen, L.C.5
Beard, W.A.6
Wilson, S.H.7
-
28
-
-
0028338562
-
Studies of gapped DNA substrate binding by mammalian DNA polymerase β: Dependence on 5′-phosphate group
-
Prasad R., Beard W.A., and Wilson S.H. Studies of gapped DNA substrate binding by mammalian DNA polymerase β: Dependence on 5′-phosphate group. J. Biol. Chem. 269 (1994) 18096-18101
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 18096-18101
-
-
Prasad, R.1
Beard, W.A.2
Wilson, S.H.3
-
29
-
-
0032510962
-
Human DNA polymerase β deoxyribose phosphate lyase: Substrate specificity and catalytic mechanism
-
Prasad R., Beard W.A., Strauss P.R., and Wilson S.H. Human DNA polymerase β deoxyribose phosphate lyase: Substrate specificity and catalytic mechanism. J. Biol. Chem. 273 (1998) 15263-15270
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 15263-15270
-
-
Prasad, R.1
Beard, W.A.2
Strauss, P.R.3
Wilson, S.H.4
-
30
-
-
0034635403
-
FEN1 stimulation of DNA polymerase β mediates an excision step in mammalian long patch base excision repair
-
Prasad R., Dianov G.L., Bohr V.A., and Wilson S.H. FEN1 stimulation of DNA polymerase β mediates an excision step in mammalian long patch base excision repair. J. Biol. Chem. 275 (2000) 4460-4466
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 4460-4466
-
-
Prasad, R.1
Dianov, G.L.2
Bohr, V.A.3
Wilson, S.H.4
-
31
-
-
0035980003
-
DNA polymerase β-mediated long patch base excision repair: Poly(ADP-ribose) polymerase-1 stimulates strand displacement DNA synthesis
-
Prasad R., Lavrik O.I., Kim S.J., Kedar P., Yang X.P., Vande Berg B.J., and Wilson S.H. DNA polymerase β-mediated long patch base excision repair: Poly(ADP-ribose) polymerase-1 stimulates strand displacement DNA synthesis. J. Biol. Chem. 276 (2001) 32411-32414
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 32411-32414
-
-
Prasad, R.1
Lavrik, O.I.2
Kim, S.J.3
Kedar, P.4
Yang, X.P.5
Vande Berg, B.J.6
Wilson, S.H.7
-
32
-
-
0030930760
-
Crystal structures of human DNA polymerase β complexed with gapped and nicked DNA: Evidence for an induced fit mechanism
-
Sawaya M.R., Prasad P., Wilson S.H., Kraut J., and Pelletier H. Crystal structures of human DNA polymerase β complexed with gapped and nicked DNA: Evidence for an induced fit mechanism. Biochemistry 36 (1997) 11205-11215
-
(1997)
Biochemistry
, vol.36
, pp. 11205-11215
-
-
Sawaya, M.R.1
Prasad, P.2
Wilson, S.H.3
Kraut, J.4
Pelletier, H.5
-
33
-
-
0028966181
-
DNA polymerase β conducts the gap-filling step in uracil-initiated base excision repair in a bovine testis nuclear extract
-
Singhal R.K., Prasad R., and Wilson S.H. DNA polymerase β conducts the gap-filling step in uracil-initiated base excision repair in a bovine testis nuclear extract. J. Biol. Chem. 270 (1995) 949-957
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 949-957
-
-
Singhal, R.K.1
Prasad, R.2
Wilson, S.H.3
-
34
-
-
0027179827
-
Short gap-filling synthesis by DNA polymerase β is processive
-
Singhal R.K., and Wilson S.H. Short gap-filling synthesis by DNA polymerase β is processive. J. Biol. Chem. 268 (1993) 15906-15911
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 15906-15911
-
-
Singhal, R.K.1
Wilson, S.H.2
-
35
-
-
0028933306
-
Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase
-
Slupphaug G., Eftedal I., Kavli B., Bharati S., Helle N.M., Haug T., Levine D.W., and Krokan H.E. Properties of a recombinant human uracil-DNA glycosylase from the UNG gene and evidence that UNG encodes the major uracil-DNA glycosylase. Biochemistry 34 (1995) 128-138
-
(1995)
Biochemistry
, vol.34
, pp. 128-138
-
-
Slupphaug, G.1
Eftedal, I.2
Kavli, B.3
Bharati, S.4
Helle, N.M.5
Haug, T.6
Levine, D.W.7
Krokan, H.E.8
-
36
-
-
0030030379
-
Requirement of mammalian DNA polymerase β in base excision repair
-
Sobol R.W., Horton J.K., Kühn R., Gu H., Singhal R.K., Prasad R., Rajewsky K., and Wilson S.H. Requirement of mammalian DNA polymerase β in base excision repair. Nature 379 (1996) 183-186
-
(1996)
Nature
, vol.379
, pp. 183-186
-
-
Sobol, R.W.1
Horton, J.K.2
Kühn, R.3
Gu, H.4
Singhal, R.K.5
Prasad, R.6
Rajewsky, K.7
Wilson, S.H.8
-
37
-
-
0034659935
-
The lyase activity of the DNA repair protein β-polymerase protects from DNA-damage-induced cytotoxicity
-
Sobol R.W., Prasad R., Evenski A., Baker A., Yang X.P., Horton J.K., and Wilson S.H. The lyase activity of the DNA repair protein β-polymerase protects from DNA-damage-induced cytotoxicity. Nature 405 (2000) 807-810
-
(2000)
Nature
, vol.405
, pp. 807-810
-
-
Sobol, R.W.1
Prasad, R.2
Evenski, A.3
Baker, A.4
Yang, X.P.5
Horton, J.K.6
Wilson, S.H.7
-
38
-
-
0032516831
-
Mammalian abasic site base excision repair: Identification of the reaction sequence and rate-determining steps
-
Srivastava D.K., Vande Berg B.J., Prasad R., Molina J.T., Beard W.A., Tomkinson A.E., and Wilson S.H. Mammalian abasic site base excision repair: Identification of the reaction sequence and rate-determining steps. J. Biol. Chem. 273 (1998) 21203-21209
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 21203-21209
-
-
Srivastava, D.K.1
Vande Berg, B.J.2
Prasad, R.3
Molina, J.T.4
Beard, W.A.5
Tomkinson, A.E.6
Wilson, S.H.7
-
39
-
-
0031021533
-
Substrate binding by human apurinic/apyrimidinic endonuclease indicates a Briggs-Haldane mechanism
-
Strauss P.R., Beard W.A., Patterson R.A., and Wilson S.H. Substrate binding by human apurinic/apyrimidinic endonuclease indicates a Briggs-Haldane mechanism. J. Biol. Chem. 272 (1997) 1302-1307
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 1302-1307
-
-
Strauss, P.R.1
Beard, W.A.2
Patterson, R.A.3
Wilson, S.H.4
-
40
-
-
0018799858
-
Steady-state kinetics of mouse DNA polymerase β
-
Tanabe K., Bohn E.W., and Wilson S.H. Steady-state kinetics of mouse DNA polymerase β. Biochemistry 18 (1979) 3401-3406
-
(1979)
Biochemistry
, vol.18
, pp. 3401-3406
-
-
Tanabe, K.1
Bohn, E.W.2
Wilson, S.H.3
-
41
-
-
0035793560
-
DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase β: Implication for the identity of the rate-limiting conformational change
-
Vande Berg B.J., Beard W.A., and Wilson S.H. DNA structure and aspartate 276 influence nucleotide binding to human DNA polymerase β: Implication for the identity of the rate-limiting conformational change. J. Biol. Chem. 276 (2001) 3408-3416
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 3408-3416
-
-
Vande Berg, B.J.1
Beard, W.A.2
Wilson, S.H.3
-
42
-
-
0037135556
-
Mismatch repair in human nuclear extracts: Quantitative analyses of excision of nicked circular mismatched DNA substrates, constructed by a new technique employing synthetic oligonucleotides
-
Wang H., and Hays J.B. Mismatch repair in human nuclear extracts: Quantitative analyses of excision of nicked circular mismatched DNA substrates, constructed by a new technique employing synthetic oligonucleotides. J. Biol. Chem. 277 (2002) 26136-26142
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 26136-26142
-
-
Wang, H.1
Hays, J.B.2
-
43
-
-
0027970892
-
Mammalian DNA ligase II is highly homologous with vaccinia DNA ligase: Identification of the DNA ligase II active site for enzyme-adenylate formation
-
Wang Y.C., Burkhart W.A., Mackey Z.B., Moyer M.B., Ramos W., Husain I., Chen J., Besterman J.M., and Tomkinson A.E. Mammalian DNA ligase II is highly homologous with vaccinia DNA ligase: Identification of the DNA ligase II active site for enzyme-adenylate formation. J. Biol. Chem. 269 (1994) 31923-31928
-
(1994)
J. Biol. Chem.
, vol.269
, pp. 31923-31928
-
-
Wang, Y.C.1
Burkhart, W.A.2
Mackey, Z.B.3
Moyer, M.B.4
Ramos, W.5
Husain, I.6
Chen, J.7
Besterman, J.M.8
Tomkinson, A.E.9
-
44
-
-
0036295231
-
Polymerase β simulations suggest that Arg258 rotation is a slow step rather than large subdomain motions per se
-
Yang L., Beard W.A., Wilson S.H., Broyde S., and Schlick T. Polymerase β simulations suggest that Arg258 rotation is a slow step rather than large subdomain motions per se. J. Mol. Biol. 317 (2002) 679-699
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 679-699
-
-
Yang, L.1
Beard, W.A.2
Wilson, S.H.3
Broyde, S.4
Schlick, T.5
|