Cryptic species and population structuring of the Atlantic and Pacific seabob shrimp species, Xiphopenaeus kroyeri and Xiphopenaeus riveti

Marine Biology

Volumn 149, Issue 3, 2006, Pages 491-502

  Gusmao J ^a,b   Lazoski, C ^a   Monteiro, F A ^c   Sole Cava A M ^a,d  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b STATE UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^c INSTITUTO OSWALDO CRUZ   (Brazil)

^d UNIVERSITY OF LIVERPOOL   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALLOZYME; COMMERCIAL SPECIES; DIVERGENCE; FISHERY PRODUCTION; GENETIC ANALYSIS; GENETIC STRUCTURE; MITOCHONDRIAL DNA; MORPHOLOGY; POPULATION STRUCTURE; SHRIMP CULTURE;

ATLANTIC COAST [SOUTH AMERICA]; BRAZIL; PACIFIC COAST [SOUTH AMERICA]; SOUTH AMERICA;

DECAPODA (CRUSTACEA); XIPHOPENAEUS; XIPHOPENAEUS KROYERI;

EID: 33745201236     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-005-0232-x     Document Type: Article

References (51)

1. Baldwin JD, Bass AL, Bowen BW, Clark WH (1998) Molecular phylogeny and biogeography of the marine shrimp Penaeus. Mol Phylogenet Evol 10:399-407
2. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2004) GENETIX 4.05, logiciel sous Windows™ pour la génétique des populations. Laboratoire Génome, Populations, Interactions, CNRS UMR 5171, Université de Montpellier II, Montpellier, France
3. Bouvier EL (1907) Crustacés Décapodes nouveaux recueillis a Païta (Perú) par M. le Dr. Rivet. Bull Mus Hist Nat Paris 13:113-116
4. Brewer GJ (1970) An introduction to isozyme techniques. Academic Press, NY
5. Castro RH, Costa RC, Fransozo A, Mantelatto FLM (2005) Population structure of the seabob shrimp Xiphopenaeus kroyeri (Heller 1862) (Crustacea: Penaeoidea) in the littoral of São Paulo, Brazil. Sci Mar 69:105-112
6. Damato ME, Corach D (1994) Genetic diversity of populations of the fresh-water shrimp Macrobrachium borellii (Caridea, Palaemonidae) evaluated by RAPD analysis. J Crust Biol 16:650-655
7. Efron B (1981) Nonparametric estimates of standard error - the jackknife, the boostrap and other resampling methods. Biometrika 68:589-599
8. Fabricius JC (1798) Suplementum entomologiae systematicae. Proft and Storch, Hafniae, p 572
9. FAO (2005) Fishstat Plus 2.30: Universal software for fishery statistical time series. Fisheries Department, Fishery information, Data and statistics unit
10. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368-376
11. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
12. Gusmão J, Lazoski C, Solé-Cava AM (2000) A new species of Penaeus (Crustacea: Penaeidae) revealed by allozyme and cytochrome oxidase I analyses. Mar Biol 137:435-446
13. Gusmão J, Solé-Cava AM (2002) Um sistema de diagnóstico molecular para a identificaçã;o de espécies comerciais de camarões marinhos brasileiros. In: Blas I (ed) CIVA 2002: Comunicaciones y Foros de Discusión. Primer Congreso Iberoamericano Virtual de Acuicultura. (http://www.civa2002.org). Zaragosa, pp 754-764
14. Heller C (1862) Beiträge zur näharen Kenntnis der Macruoren. Sitzungsber Math Naturwiss cl kaiserliche Akad Wiss Wien 45:389-426, plates 1-2
15. Hoelzel AR, Green A (1992) Analysis of population-level variation by sequencing PCR-amplified DNA. In: Hoelzel AR (eds) Molecular Genetic Analysis of Populations. Oxford University Press, Oxford, pp 159-188
16. Hualkasin W, Sirimontaporn P, Chotigeat W, Querci J, Phongdara A (2003) Molecular phylogenetic analysis of white prawn species and the existence of two clades in Penaeus merguiensis. J exp mar Biol Ecol 296:1-11
17. Kimura M (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16:111-120
18. Knowlton N, Weigt LA (1998) New dates and new rates for divergence across the Isthmus of Panama. Proc R Soc Lond B 265:2257-2263
19. Knowlton N (2000) Molecular genetic analyses of species boundaries in the sea. In: Solé-Cava AM, Russo CAM, Thorpe JP (eds) Marine genetics. Kluwer, Dordrecht, pp 73-90
20. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
21. Lavery S, Chan TY, Tam YK, Chu KH (2004) Phylogenetic relationships and evolutionary history of the shrimp genus Penaeus s.l. derived from mitochondrial DNA. Mol Phylogenet Evol 31:39-49
22. Lester LJ (1983) Developing a selective breeding program for penaeid shrimp mariculture. Aquaculture 33:41-50
23. Manchenko GP (1994) Handbook of detection of enzymes on electrophoretic gels. CRC Press Inc, MI
24. Marko PB (2002) Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the Isthmus of Panama. Mol Biol Evol 19:2005-2021
25. McDonald JH, Kreitman M (1991) Neutral mutation hypothesis test. Nature 354:116-116
26. Mulley JC, Latter BDH (1980) Genetic variation and evolutionary relationships within a group of thirteen species of penaeid prawns. Evolution 34:904-916
27. Murphy RW, Sites JW, Buth DG, Haufler CH (1990) Proteins I. Isozyme electrophoresis. In: Hillis DM, Moritz C (eds) Molecular Systematics. Sinauer Associates, MA, pp 45-126
28. Nakagaki JM, Negreiros-Fransozo ML (1998) Population biology of Xiphopenaeus kroyeri (Heller 1862) (Decapoda: Penaeidae) from Ubatuba Bay, São Paulo, Brazil. J Shellfish Res 17:931-935
29. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
30. Neto JD, Dornelles LDC (1996) Diagnóstico da pesca marítima do Brasil. Coleção Meio Ambiente (Série Estudos - Pesca 20) IBAMA, Brasilia
31. Ota T (1993) DISPAN: Genetic distance and phylogenetic analysis. Institute of Molecular Evolutionary Genetics, The Pennsylvania State University, PY
32. Paiva MP, Bezerra RC, Fonteles-Filho AA (1971) Tentativa de avaliação dos recursos pesqueiros do nordeste brasileiro. Arq Ciênc Mar Fortaleza 11:1-43
33. Palumbi SR, Benzie J (1991) Large mitochondrial DNA differences between morphologically similar penaeid shrimp. Mol Mar Biol Biotechnol 1:27-34
34. Pérez Farfante I, Kensley B (1997) Penaeoid and sergestoid shrimps and prawns of the world. Keys and diagnoses for the families and genera. Mem Mus Nat Hist Nat Paris 175:1-79
35. Posada D, Crandall K (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817-818
36. Quan J, Zhuang Z, Deng J, Dai J, Zhang YP (2004) Phylogenetic relationships of 12 Penaeoidea shrimp species deduced from mitochondrial DNA sequences. Biochem Genet 42:331-345
37. Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497
38. Saitou N, Nei M (1987) The Neighbor-Joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
39. Shaw CR, Prasad R (1970) Starch gel electrophoresis of enzymes - a compilation of recipes. Biochem Genet 4:297-320
40. Smith S (1869) Notice of the Crustacea collected by Prof. C.F. Hartt on the coast of Brazil in 1867. Trans Conn Acad Sci 2:1-42
41. Sneath PHA, Sokal RR (1973) Numerical taxonomy. WH Freeman, San Francisco, USA
42. Sunden SLF, Davis SK (1991) Evaluation of genetic variation in a domestic population of Penaeus vannamei (Boone): a comparison with three natural populations. Aquaculture 97:131-142
43. Swofford DL (1998) PAUP. Phylogenetic analysis using parsimony, Version 4 Sinauer, Sunderland, MA
44. Swofford DL, Selander RB (1981) BIOSYS-1, a FORTRAN programme for the comprehensive analysis of electrophoretic data in population genetics and systematics. J Hered 72:281-283
45. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
46. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acid Res 25:4876-4882
47. Thorpe JP, Solé-Cava AM, Watts PC (2000) Exploited marine invertebrates: genetics and fisheries. Hydrobiologia 420:165-184
48. Voloch C, Solé-Cava AM (2005) Genetic structure of the sea-bob shrimp (Xiphopenaeus kroyeri Heller 1862; Decapoda: Penaeidae) along the Brazilian Southeastern coast. Gen Mol Biol 28:257-257
49. Waples RS (1987) A multispecies approach to the analysis of gene flow in marine shore fishes. Evolution 41:385-400
50. Ward RD, Beardmore JA (1977) Protein variation in the plaice (Pleuronectes platessa). Gen Res 30:45-62
51. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370