A nature of conformational changes of yeast tRNAPhe: High hydrostatic pressure effects

International Journal of Biological Macromolecules

Volumn 37, Issue 3, 2005, Pages 109-114

  Giel Pietraszuk, Małgorzata ^a   Barciszewski, Jan ^a  

^a INSTITUTE OF BIOORGANIC CHEMISTRY   (Poland)

Author keywords

Fluorescence; FTIR; HHP; High hydrostatic pressure; tRNAPhe conformational flexibility

Indexed keywords

FUNGAL RNA; INORGANIC SALT; MAGNESIUM ION; METAL ION; PHENYLALANINE; TRANSFER RNA;

ANTICODON; ARTICLE; CHEMICAL BOND; CONFORMATIONAL TRANSITION; ENERGY; EXPOSURE; FLUORESCENCE SPECTROSCOPY; HYDROGEN BOND; HYDROSTATIC PRESSURE; INFRARED SPECTROSCOPY; NONHUMAN; RNA CONFORMATION; YEAST;

EID: 27744575584     PISSN: 01418130     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijbiomac.2005.09.003     Document Type: Article

References (72)

1. E. Westhof Water and Biological Macromolecules 1993 Westhof E Ed London
2. L. Jovine, S. Djordjevic, and D. Rhodes J. Mol. Biol. 301 2000 401
3. R. Ishitani, O. Nureki, N. Nameki, N. Okada, S. Nishimura, and S. Yokoyama Cell 113 2003 383
4. J.D. Robertus, J.E. Ladner, J.T. Finch, D. Rhodes, R.S. Brown, B.F.C. Clark, and A. Klug Nucl. Acids Res. 1 1974 927
5. S.H. Kim, F.L. Suddath, G.J. Quigley, A. McPherson, J.L. Sussman, A.H. Wang, N.C. Seeman, and A. Rich Science 185 1974 435
6. J.E. Ladner, A. Jack, J.D. Robertus, R.S. Brown, D. Rhodes, B.F.C. Clark, and A. Klug Proc. Natl. Acad. Sci. U.S.A. 72 1975 4414
7. A. Jack, J.E. Ladner, D. Rhodes, R.S. Brown, and A. Klug J. Mol. Biol. 111 1977 315
8. G.J. Quigley, M.M. Teeter, and A. Rich Proc. Natl. Acad. Sci. U.S.A. 75 1978 64
9. C. Stout, H. Mizuno, S.T. Rao, P. Swaminathan, J. Rubin, T. Brennan, and M. Sundaralingam Acta Crystallogr. B 34 1978 1529
10. E. Westhof, P. Dumas, and D. Moras Acta Crystallogr. A 44 1988 112
11. H. Shi, and P.B. Moore RNA 6 2000 1091
12. M.W. Friederich, E. Vacano, and P.J. Hagerman Proc. Natl. Acad. Sci. U.S.A. 95 1998 3572
13. R.B. Macgregor Biochim. Biophys. Acta 1595 2002 266
14. A. Krzyżaniak, P. Sałański, J. Jurczak, and J. Barciszewski FEBS Lett. 279 1991 1
15. A. Krzyżaniak, J. Barciszewski, J.P. Furste, R. Bald, V.A. Erdmann, P. Sałański, and J. Jurczak Int. J. Biol. Macromol. 16 1994 159
16. V.V. Mozhaev, K. Heremans, J. Frank, P. Masson, and C. Balny Proteins Struct. Funct. Genet. 24 1996 81 91
17. K. Heremans, and L. Smeller Biochim. Biophys. Acta 1386 1998 353
18. R. Winter Advances in High Pressure Bioscience and Biotechnology II 2003 Springer-Verlag Heidelberg
19. G. Panick, R. Malessa, R. Winter, G. Rapp, K.J. Frye, and C.A. Royer J. Mol. Biol. 275 1998 489
20. H. Herberhold, S. Marchal, R. Lange, C.H. Scheyhing, R.F. Vogel, and R. Winter J. Mol. Biol. 330 2003 1153
21. R.K. Hall, I. Tinoco Jr., and J.H. van de Sade Nature 311 1984 584
22. C.A. Royer, and Braz J. Med. Biol. Res. 38 2005 1167
23. S. Marchal, J. Torrent, P. Masson, J.M. Kornblatt, P. Tortora, P. Fusi, R. Lange, and C. Balny Braz. J. Med. Biol. Res. 38 2005 1175
24. W. Saenger, W.N. Hunter, and O. Kennard Nature 324 1986 385
25. W. Saenger Annu. Rev. Biophys. Biophys. Chem. 16 1987 93
26. A. Rich, A. Nordheim, and A.H. Wang J. Annu. Rev. Biochem. 53 1984 791
27. M.J. Kornblatt, J.A. Kornblatt, and G. Hui Bon Hoa Archiv. Biochem. Biophys. 306 1993 495
28. A. Priev, A. Almagor, S. Yedgar, and B. Gavisch Biochemistry 35 1996 2061
29. R. Leberman, and A.K. Soper Nature 378 1995 364
30. K. Hall, P. Cruz, I. Tinoco Jr., T.M. Jovin, and J.H. van de Sande Nature 311 1984 584
31. R.W. Adamiak, A. Galat, and B. Skalski Biochim. Biophys. Acta 825 1985 345
32. M. Popenda, J. Milecki, and R.W. Adamiak Nucl. Acids Res. 32 2004 4044
33. P. Auffinger, S. Louise-May, and E. Westhof J. Am. Chem. Soc. 118 1996 1181
34. J. Israelachvili, and H. Wennerstrom Nature 79 1996 219
35. P. Auffinger, and E. Westhof J. Mol. Biol. 300 2000 1113
36. F. Stillinger Nature 209 1980 451
37. A.V. Okhulkov, Yu.N. Demianets, and Yu.E. Gorbaty J. Chem. Phys. 100 1994 1578
38. K. Bagchi, S. Balasubramanian, and M.L. Klein J. Chem. Phys. 107 1997 8561
39. M.C. Bellisent-Funel J. Chem. Phys. 102 1995 3727
40. R.C. Dougherty J. Chem. Phys. 109 1998 7372
41. E. Schwegler, G. Galli, and F. Gygy Phys. Rev. Lett. 84 2000 2429
42. S.W. Benson, and E.D. Siebert J. Am. Chem. Soc. 114 1992 4269
43. K.S. Kim, M. Dupuis, G.C. Lie, and E. Clementi Chem. Phys. Lett. 131 1986 451
44. C.J. Gruenloh, J.R. Carney, C.A. Arrington, T.S. Zwier, FredericsSY, and K.D. Jordan Science 276 1997 1678
45. W.B. Blanton, S.W. Gordon-Wylie, G.R. Clark, K.D. Jordan, J.T. Wood, U. Geiser, and J. Collins J. Am. Chem. Soc. 121 1999 3551
46. D.E. Khoshtariya, A. Zahl, T.D. Dolidze, A. Naubrand, and R. van Eldik Chem. Phys. Chem. 5 2004 1398
47. J. Barciszewski, J. Jurczak, S. Porowski, T. Specht, and V.A. Erdmann Eur. J. Biochem. 260 1999 293
48. K. Beardsley, T. Tao, and C.R. Cantor Biochemistry 9 1970 3524
49. J. Eisinger, B. Feuer, and T. Yamane Proc. Natl. Acad. Sci. U.S.A. 65 1970 638
50. B. Robison, and T.P. Zimmerman J. Biol. Chem. 246 1971 4664
51. L. Beres, and Lucas-Lenard J. Biochem. 12 1973 3998
52. N. Okabe, and F. Cramer J. Biochem. (Tokyo) 89 1981 1439
53. E. Taillandier, and Liquier J. Meth. Enzymol. 211 1992 307
54. F.B. Howard, H.T. Miles, K. Liu, J. Frazier, G. Raghunathan, and V. Sasisekharan Biochemistry 31 1992 10671
55. M. Banyay, M. Sarkar, and A. Graslund Biophys. Chem. 104 2003 477
56. M. Tsuboi E.G.J. Brame Applied Spectroscopy Reviews 1996 Marcel Dekker New York
57. M. Sarkar, U. Dornberger, E. Rozners, H. Fritzsche, R. Stromberg, and A. Graslund Biochemistry 36 1997 15463
58. C. Dagneaux, J. Liquier, and E. Taillandier Biochemistry 34 1995 16618
59. K.O. Burkey, A.G. Marshall, and J.O. Alben Biochemistry 22 1983 4223
60. D.C. Lynch, and P. Schimmel Biochemistry 13 1974 1841
61. V. Serebrov, K. Vassilenko, N. Kholod, H.J. Gross, and L. Kisselev Nucl. Acids Res. 26 1998 2723
62. A.P. White, and J.W. Powell Biochemistry 34 1995 1137
63. A.P. White, K.K. Reeves, E. Snyder, J. Farrell, J.W. Powell, V. Mohan, and R.H. Griffey Nucl. Acids Res. 24 1996 3261
64. M. Lindqvist, M. Sarkar, A. Winqvist, E. Rozners, R. Stromberg, and A. Graslund Biochemistry 39 2000 1693
65. Y. Fang, Y. Wei, C. Bai, S.-B. Lin, and L.-S. Kan J. Biomol. Struct. Dyn. 14 1997 485
66. R. Ahmad, M. Naoui, J.F. Nealt, S. Diamantoglou, and H.A. Tajmir-Riahi J. Biomol. Struct. Dyn. 13 1996 795
67. E.V. Hackl, S.V. Kornilova, and Y.P. Blagoi Int. J. Biol. Macromol. 35 2005 175
68. A. Maelicke, F. von der Haar, and F. Cramer Biopolymers 12 1973 27
69. T.P. Zimmerman, B. Robison, and J.H. Gibbs Biochim. Biophys. Acta 209 1970 151
70. W.E. Blumberg, R.E. Dale, J. Eisinger, and D.M. Zuckerman Biopolymers 13 1974 1607
71. B.D. Wells Nucl. Acids Res. 12 1984 2157
72. M. Perbandt, M.Z. Barciszewska, C. Betzel, V.A. Erdmann, and Barciszewski J. Mol. Biol. Rep. 30 2003 27