Quantitative real-time PCR assay for detection of human polyomavirus infection

Journal of Virological Methods

Volumn 135, Issue 2, 2006, Pages 207-213

  Elfaitouri, Amal ^a   Hammarin, Anna Lena ^b   Blomberg, Jonas ^a  

^a UPPSALA UNIVERSITY HOSPITAL   (Sweden)

^b SWEDISH INSTITUTE FOR INFECTIOUS DISEASE CONTROL   (Sweden)

Author keywords

BK virus (BKV); Broadly targeted PCR; JC virus; Polyomavirus; QPCR; Real time PCR; Simian virus 40 (SV40)

Indexed keywords

PROTEIN VP2; VIRUS DNA; VIRUS T ANTIGEN;

ARTICLE; BK VIRUS; BLOOD ANALYSIS; BLOOD DONOR; CENTRAL NERVOUS SYSTEM DISEASE; CEREBROSPINAL FLUID; CLINICAL ARTICLE; CONTROLLED STUDY; FALSE POSITIVE RESULT; GENE TARGETING; HUMAN; JC VIRUS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; POLYMERASE CHAIN REACTION; POLYOMA VIRUS; PRIORITY JOURNAL; PROGRESSIVE MULTIFOCAL LEUKOENCEPHALOPATHY; REAL TIME POLYMERASE CHAIN REACTION; RHESUS MONKEY; SENSITIVITY ANALYSIS; SENSITIVITY AND SPECIFICITY; SIMIAN VIRUS 40; URINALYSIS; UROGENITAL TRACT INFECTION; VIRAL CONTAMINATION; VIRUS DETECTION; VIRUS INFECTION;

BASE SEQUENCE; BK VIRUS; CEREBROSPINAL FLUID; DNA PRIMERS; DNA, VIRAL; HUMANS; JC VIRUS; MOLECULAR SEQUENCE DATA; POLYMERASE CHAIN REACTION; POLYOMAVIRUS INFECTIONS; SENSITIVITY AND SPECIFICITY; SIMIAN VIRUS 40;

BK POLYOMAVIRUS; MACACA MULATTA; POLYOMAVIRUS; SIMIAN VIRUS 40;

EID: 33745164564     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2006.03.006     Document Type: Article

References (43)

1. Arthur R.R., and Shah K.V. Polyomaviruses BK and JC. In: Lennette E.H., and Smith T.F. (Eds). Laboratory Diagnosis of Virall Infections (1999), Marcel Dekker, New York 721-730
2. Arthur R.R., Shah K.V., Baust S.J., Santos G.W., and Saral R. Association of BK viruria with hemorrhagic cystitis in recipients of bone marrow transplants. N. Engl. J. Med. 315 (1986) 230-234
3. Biel S.S., Nitsche A., Kurth A., Siegert W., Ozel M., and Gelderblom H.R. Detection of human polyomaviruses in urine from bone marrow transplant patients: comparison of electron microscopy with PCR. Clin. Chem. 50 (2004) 306-312
4. Bogdanovic G., Brytting M., Cinque P., Grandien M., Fridell E., Ljungman P., Lonnqvist B., and Hammarin A.L. Nested PCR for detection of BK virus and JC virus DNA. Clin. Diagn. Virol. 2 (1994) 211-220
5. Bogdanovic G., Grandien M., Brytting M., and Fridell E. BK and JC viruses-2 polyomaviruses causing disease in immunosuppressed patients. Lakartidningen 89 (1992) 3925-3926
6. Bogdanovic G., Priftakis P., Hammarin A.L., Soderstrom M., Samuelson A., Lewensohn-Fuchs I., and Dalianis T. Detection of JC virus in cerebrospinal fluid (CSF) samples from patients with progressive multifocal leukoencephalopathy but not in CSF samples from patients with herpes simplex encephalitis, enteroviral meningitis, or multiple sclerosis. J. Clin. Microbiol. 36 (1998) 1137-1138
7. Bossolasco S., Calori G., Moretti F., Boschini A., Bertelli D., Mena M., Gerevini S., Bestetti A., Pedale R., Sala S., Sala S., Lazzarin A., and Cinque P. Prognostic significance of JC virus DNA levels in cerebrospinal fluid of patients with HIV-associated progressive multifocal leukoencephalopathy. Clin. Infect. Dis. 40 (2005) 738-744
8. Bratt G., Hammarin A.L., Grandien M., Hedquist B.G., Nennesmo I., Sundelin B., and Seregard S. BK virus as the cause of meningoencephalitis, retinitis and nephritis in a patient with AIDS. AIDS 13 (1999) 1071-1075
9. Cantalupo P., Doering A., Sullivan C.S., Pal A., Peden K.W., Lewis A.M., and Pipas J.M. Complete nucleotide sequence of polyomavirus SA12. J. Virol. 79 (2005) 13094-13104
10. Carbone M., Pass H.I., Miele L., and Bocchetta M. New developments about the association of SV40 with human mesothelioma. Oncogene 22 (2003) 5173-5180
11. Carbone M., Rizzo P., and Pass H.I. Simian virus 40, poliovaccines and human tumors: a review of recent developments. Oncogene 15 (1997) 1877-1888
12. Comar M., D'Agaro P., Andolina M., Maximova N., Martini F., Tognon M., and Campello C. Hemorrhagic cystitis in children undergoing bone marrow transplantation: a putative role for simian virus 40. Transplantation 78 (2004) 544-548
13. Croul S., Otte J., and Khalili K. Brain tumors and polyomaviruses. J. Neurovirol. 9 (2003) 173-182
14. de Bruyn G., and Limaye A.P. BK virus-associated nephropathy in kidney transplant recipients. Rev. Med. Virol. 14 (2004) 193-205
15. Del Valle L., White M.K., Enam S., Oviedo S.P., Bromer M.Q., Thomas R.M., Parkman H.P., and Khalili K. Detection of JC virus DNA sequences and expression of viral T antigen and agnoprotein in esophageal carcinoma. Cancer 103 (2005) 516-527
16. Dolei A., Pietropaolo V., Gomes E., Di Taranto C., Ziccheddu M., Spanu M.A., Lavorino C., Manca M., and Degener A.M. Polyomavirus persistence in lymphocytes: prevalence in lymphocytes from blood donors and healthy personnel of a blood transfusion centre. J. Gen. Virol. 81 (2000) 1967-1973
17. Garcea R.L., and Imperiale M.J. Simian virus 40 infection of humans. J. Virol. 77 (2003) 5039-5045
18. Gottlieb K.A., and Villarreal L.P. Natural biology of polyomavirus middle T antigen. Microbiol. Mol. Biol. Rev. 65 (2001) 288-318 (second and third pages, table of contents)
19. Hammarin A.L., Bogdanovic G., Svedhem V., Pirskanen R., Morfeldt L., and Grandien M. Analysis of PCR as a tool for detection of JC virus DNA in cerebrospinal fluid for diagnosis of progressive multifocal leukoencephalopathy. J. Clin. Microbiol. 34 (1996) 2929-2932
20. Jha K.K., Banga S., Palejwala V., and Ozer H.L. SV40-Mediated immortalization. Exp. Cell Res. 245 (1998) 1-7
21. Johne R., Enderlein D., Nieper H., and Muller H. Novel polyomavirus detected in the feces of a chimpanzee by nested broad-spectrum PCR. J. Virol. 79 (2005) 3883-3887
22. Jorgensen G.E., Hammarin A.L., Bratt G., Grandien M., Flaegstad T., and Johnsen J.I. Identification of a unique BK virus variant in the CNS of a patient with AIDS. J. Med. Virol. 70 (2003) 14-19
23. Kazory A., Ducloux D., Chalopin J.M., Angonin R., Fontaniere B., and Moret H. The first case of JC virus allograft nephropathy. Transplantation 76 (2003) 1653-1655
24. Klein G. Simian virus 40 and the human mesothelium. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 9830-9831
25. Leung A.Y., Chan M., Tang S.C., Liang R., and Kwong Y.L. Real-time quantitative analysis of polyoma BK viremia and viruria in renal allograft recipients. J. Virol. Meth. 103 (2002) 51-56
26. Leung A.Y., Suen C.K., Lie A.K., Liang R.H., Yuen K.Y., and Kwong Y.L. Quantification of polyoma BK viruria in hemorrhagic cystitis complicating bone marrow transplantation. Blood 98 (2001) 1971-1978
27. Li R.M., Mannon R.B., Kleiner D., Tsokos M., Bynum M., Kirk A.D., and Kopp J.B. BK virus and SV40 co-infection in polyomavirus nephropathy. Transplantation 74 (2002) 1497-1504
28. Limaye A.P., Jerome K.R., Kuhr C.S., Ferrenberg J., Huang M.L., Davis C.L., Corey L., and Marsh C.L. Quantitation of BK virus load in serum for the diagnosis of BK virus-associated nephropathy in renal transplant recipients. J. Infect. Dis. 183 (2001) 1669-1672
29. Lopez-Rios F., Illei P.B., Rusch V., and Ladanyi M. Evidence against a role for SV40 infection in human mesotheliomas and high risk of false-positive PCR results owing to presence of SV40 sequences in common laboratory plasmids. Lancet 364 (2004) 1157-1166
30. Lundstig A., Eliasson L., Lehtinen M., Sasnauskas K., Koskela P., and Dillner J. Prevalence and stability of human serum antibodies to simian virus 40 VP1 virus-like particles. J. Gen. Virol. 86 (2005) 1703-1708
31. Major E.O., Amemiya K., Tornatore C.S., Houff S.A., and Berger J.R. Pathogenesis and molecular biology of progressive multifocal leukoencephalopathy, the JC virus-induced demyelinating disease of the human brain. Clin. Microbiol. Rev. 5 (1992) 49-73
32. Milstone A., Vilchez R.A., Geiger X., Fogo A.B., Butel J.S., and Dummer S. Polyomavirus simian virus 40 infection associated with nephropathy in a lung-transplant recipient. Transplantation 77 (2004) 1019-1024
33. Norkin L.C. Papovaviral persistent infections. Microbiol. Rev. 46 (1982) 384-425
34. Priftakis P., Bogdanovic G., Kokhaei P., Mellstedt H., and Dalianis T. BK virus (BKV) quantification in urine samples of bone marrow transplanted patients is helpful for diagnosis of hemorrhagic cystitis, although wide individual variations exist. J. Clin. Virol. 26 (2003) 71-77
35. Randhawa P., Baksh F., Aoki N., Tschirhart D., and Finkelstein S. JC virus infection in allograft kidneys: analysis by polymerase chain reaction and immunohistochemistry. Transplantation 71 (2001) 1300-1303
36. Reiss K., and Khalili K. Viruses and cancer: lessons from the human polyomavirus, JCV. Oncogene 22 (2003) 6517-6523
37. Rollison D.E., Utaipat U., Ryschkewitsch C., Hou J., Goldthwaite P., Daniel R., Helzlsouer K.J., Burger P.C., Shah K.V., and Major E.O. Investigation of human brain tumors for the presence of polyomavirus genome sequences by two independent laboratories. Int. J. Cancer 113 (2005) 769-774
38. Shah K.V. Simian virus 40 and human disease. J. Infect. Dis. 190 (2004) 2061-2064
39. Tognon M., Corallini A., Martini F., Negrini M., and Barbanti-Brodano G. Oncogenic transformation by BK virus and association with human tumors. Oncogene 22 (2003) 5192-5200
40. Tognon M., Martini F., Corallini A., and Barbanti-Brodano G. SV40 and human cancers. Int. J. Cancer 110 (2004) 778-779 (author reply 780)
41. Vanchiere J.A., White Z.S., and Butel J.S. Detection of BK virus and simian virus 40 in the urine of healthy children. J. Med. Virol. 75 (2005) 447-454
42. Weber T., Klapper P.E., Cleator G.M., Bodemer M., Luke W., Knowles W., Cinque P., Van Loon A.M., Grandien M., Hammarin A.L., Ciardi M., and Bogdanovic G. Polymerase chain reaction for detection of JC virus DNA in cerebrospinal fluid: a quality control study. European Union Concerted Action on Viral Meningitis and Encephalitis. J. Virol. Meth. 69 (1997) 231-237
43. Whiley D.M., Mackay I.M., and Sloots T.P. Detection and differentiation of human polyomaviruses JC and BK by LightCycler PCR. J. Clin. Microbiol. 39 (2001) 4357-4361