Genotypic diversity of Hemophilus parasuis field strains

Applied and Environmental Microbiology

Volumn 72, Issue 6, 2006, Pages 3984-3992

  Olvera, A ^a   Calsamiglia, M ^a   Aragon, V ^a,b  

^a CENTRE DE RECERCA EN SANITAT ANIMAL CRESA   (Spain)

^b UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

DISEASES; DNA SEQUENCES; EPIDEMIOLOGY; PROTEINS; RNA;

ACTINOBACILLUS STRAINS; HAEMOPHILUS PARASUIS; HEAT STOCK PROTEIN (HSP60) GENE;

GENES;

HEAT SHOCK PROTEIN 60; RNA 16S; BACTERIAL DNA; BACTERIAL RNA; CHAPERONIN;

BACTERIAL DISEASE; DNA FINGERPRINTING; EPIDEMIOLOGY; GENOTYPE; PIG; RESPIRATORY DISEASE;

16S RRNA GENE; ANIMAL DISEASE; ARTICLE; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CONSENSUS SEQUENCE; GENE; GENE SEQUENCE; GENETIC VARIABILITY; HAEMOPHILUS PARASUIS; HORIZONTAL GENE TRANSFER; HSP60 GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; RELIABILITY; SEQUENCE ANALYSIS; ANIMAL; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGENY; SWINE;

ACTINOBACILLUS; ENTEROBACTERIACEAE; HAEMOPHILUS PARASUIS;

ANIMALS; CHAPERONIN 60; DNA, BACTERIAL; HAEMOPHILUS PARASUIS; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SWINE; VARIATION (GENETICS);

EID: 33745158641     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02834-05     Document Type: Article

References (43)

1. Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. Amano, H., M. Shibata, N. Kajio, and T. Morozumi. 1996. Pathogenicity of Haemophilus parasuis serovars 4 and 5 in contact-exposed pigs. J. Vet. Med. Sci. 58:559-561.
3. Amano, H., M. Shibata, N. Kajio, and T. Morozumi. 1994. Pathologic observations of pigs intranasally inoculated with serovar 1, 4 and 5 of Haemophilus parasuis using immunoperoxidase method. J. Vet. Med. Sci. 56: 639-644.
4. Bakkali, M., T. Y. Cben, H. C. Lee, and R. J. Redfield. 2004. Evolutionary stability of DNA uptake signal sequences in the Pasteurellaceae. Proc. Natl. Acad. Sci. USA 101:4513-4518.
5. Baldauf, S. L. 2003. Phylogeny for the faint of heart: a tutorial. Trends Genet. 19:345-351.
6. Bigas, A., M. E. Garrido, A. M. de Rozas, I. Badiola, J. Barbe, and M. Llagostera. 2005. Development of a genetic manipulation system for Haemophilus parasuis. Vet. Microbiol. 105:223-228.
7. Blackall, P. J., D. J. Trott, V. Rapp-Gabrielson, and D. J. Hampson. 1997. Analysis of Haemophilus parasuis by multilocus enzyme electrophoresis. Vet. Microbiol. 56:125-134.
8. Blanco, I., L. Galina-Pantoja, S. Oliveira, C. Pijoan, C. Sanchez, and A. Canals. 2004. Comparison between Haemophilus parasuis infection in colostrums-deprived and sow-reared piglets. Vet. Microbiol. 103:21-27.
9. Brousseau, R., J. E. Hill, G. Prefontaine, S. H. Goh, J. Harel, and S. M. Hemmingsen. 2001. Streptococcus suis serotypes characterized by analysis of chaperonin 60 gene sequences. Appl. Environ. Microbiol. 67:4828-4833.
10. Chiers, K., F. Haesebrouck, B. Mateusen, I. Van Overbeke, and R. Ducatelle. 2001. Pathogenicity of Actinobacillus minor, Actinobacillus indolicus and Actinobacillus porcinus strains for gnotobiotic piglets. J. Vet. Med. B 48:127-131.
11. Cianciotto, N. P. 2001. Pathogenicity of Legionella pneumophila. Int. J. Med. Microbiol. 291:331-343.
12. de la Puente Redondo, V. A., J. Navas Mendez, N. Garcia del Blanco, N. Ladron Boronat, C. B. Gutierrez Martin, and E. F. Rodriguez Ferri. 2003. Typing of Haemophilus parasuis strains by PCR-RFLP analysis of the tbpA gene. Vet. Microbiol. 92:253-262.
13. Del Rio, M. L., C. B. Martin, J. Navas, B. Gutierrez-Muniz, J. I. Rodriguez-Barbosa, and E. F. Rodriguez Ferri. 2005. aroA gene PCR-RFLP diversity patterns in Haemophilus parasuis and Actinobacillus species. Res. Vet. Sci. 80:55-61.
14. Dewhirst, F. E., B. J. Paster, I. Olsen, and G. J. Fraser. 1992. Phylogeny of 54 representative strains of species in the family Pasteurellaceae as determined by comparison of 16S rRNA sequences. J. Bacteriol. 174:2002-2013.
15. Fares, M. A., E. Barrio, B. Sabater-Munoz, and A. Moya. 2002. The evolution of the heat-shock protein GroEL from Buchnera, the primary endosymbiont of aphids, is governed by positive selection. Mol. Biol. Evol. 19:1162-1170.
16. Fares, M. A., A. Moya, and E. Barrio. 2005. Adaptive evolution in GroEL from distantly related endosymbiotic bacteria of insects. J. Evol. Biol. 18: 651-660.
17. Fox, G. E., J. D. Wisotzkey, and P. Jurtshuk, Jr. 1992. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42:166-170.
18. Goh, S. H., S. Potter, J. O. Wood, S. M. Hemmingsen, R. P. Reynolds, and A. W. Chow. 1996. HSP60 gene sequences as universal targets for microbial species identification: studies with coagulase-negative staphylococci. J. Clin. Microbiol. 34:818-823.
19. Goh, S. H., Z. Santucci, W. E. Kloos, M. Faltyn, C. G. George, D. Driedger, and S. M. Hemmingsen. 1997. Identification of Staphylococcus species and subspecies by the chaperonin 60 gene identification method and reverse checkerboard hybridization. J. Clin. Microbiol. 35:3116-3121.
20. Graur, D., and W. H. Li. 1999. Fundamentals of molecular evolution, 2nd ed. Sinauer Associates, Sunderland, Mass.
21. Harris, D. L., R. F. Ross, and W. P. Switzer. 1969. Incidence of certain microorganisms in nasal cavities of swine in Iowa. Am. J. Vet. Res. 30:1621-1624.
22. Hoffman, P. S., and R. A. Garduno. 1999. Surface-associated heat shock proteins of Legionella pneumophila and Helicobacter pylori: roles in pathogenesis and immunity. Infect. Dis. Obstet. Gynecol. 7:58-63.
23. Janda, J. M., and S. L. Abbott. 2002. Bacterial identification for publication: when is enough enough? J. Clin. Microbiol. 40:1887-1891.
24. Kielstein, P., and V. J. Rapp-Gabrielson. 1992. Designation of 15 serovars of Haemophilus parasuis on the basis of immunodiffusion using heat-stable antigen extracts. J. Clin. Microbiol. 30:862-865.
25. Kielstein, P., H. Wuthe, O. Angen, R. Mutters, and P. Ahrens. 2001. Phenotypic and genetic characterization of NAD-dependent Pasteurellaceae from the respiratory tract of pigs and their possible pathogenetic importance. Vet. Microbiol. 81:243-255.
26. Koonin, E. V., K. S. Makarova, and L. Aravind. 2001. Horizontal gene transfer in prokaryotes: quantification and classification. Annu. Rev. Microbiol. 55:709-742.
27. Kumar, S., K. Tamura, I. B. Jakobsen, and M. Nei. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245.
28. Lancashire, J. F., T. D. Terry, P. J. Blackall, and M. P. Jennings. 2005. Plasmid-encoded TetB tetracycline resistance in Haemophilus parasuis. Antimicrob. Agents Chemother. 49:1927-1931.
29. Miniats, O. P., N. L. Smart, and S. Rosendal. 1991. Cross protection among Haemophilus parasuis strains in immunized gnotobiotic pigs. Can. J. Vet. Res. 55:37-41.
30. Moller, K., V. Fussing, P. A. Grimont, B. J. Paster, F. E. Dewhirst, and M. Kilian. 1996. Actinobacillus minor sp. nov., Actinobacillus porcinus sp. nov., and Actinobacillus indolicus sp. nov., three new V factor-dependent species from the respiratory tract of pigs. Int. J. Syst. Bacteriol. 46:951-956.
31. Moller, K., and M. Kilian. 1990. V factor-dependent members of the family Pasteurellaceae in the porcine upper respiratory tract. J. Clin. Microbiol. 28:2711-2716.
32. Morozumi, T., and J. Nicolet. 1986. Morphological variations of Haemophilus parasuis strains. J. Clin. Microbiol. 23:138-142.
33. Morozumi, T. P., U. Braun, and J. Nicolet. 1986. Deoxyribonucleic acid relatedness among strains of Haemophilus parasuis and other Haemophilus spp. of swine origin. Int. J. Syst. Bacteriol. 36:17-19.
34. Nicolet, J. 1986. Haemophilus infection, p. 426-436. in A. D. Leman et al. (ed.), Diseases of swine, 6th ed. Iowa State University Press, Ames, Iowa.
35. Oliveira, S., P. J. Blackall, and C. Pijoan. 2003. Characterization of the diversity of Haemophilus parasuis field isolates by use of serotyping and genotyping. Am. J. Vet. Res. 64:435-442.
36. Oliveira, S., and C. Pijoan. 2004. Haemophilus parasuis: new trends on diagnosis, epidemiology and control. Vet. Microbiol. 99:1-12.
37. Ooyen, A. V. 2001. New approaches for the generation and analysis of microbial fingerprints. Elsevier, Amsterdam, The Netherlands.
38. Rafiee, M., M. Bara, C. P. Stephens, and P. J. Blackall. 2000. Application of ERIC-PCR for the comparison of isolates of Haemophilus parasuis. Aust. Vet. J. 78:846-849.
39. Rapp-Gabrielson, V. J. 1999. Haemophilus parasuis, p. 475-481. In B. E. Straw, S. D'Allaire, W. L. Mengeling, and D. J. Taylor (ed.), Diseases of swine. Iowa State University Press, Ames, Iowa.
40. Stackebrandt, E. G., and B. M. Goebel. 1994. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44:846-849.
41. Versalovic, J., T. Koeuth, and J. R. Lupski. 1991. Distribution of repetitive DNA sequences in eubacteria and application to fingerprinting of bacterial genomes. Nucleic Acids Res. 19:6823-6831.
42. Wayne, L. G., D. J. Brenner, R. R. Colwell, P. A. D. Grimont, O. Kandler, M. I. Krichevshy, L. H. Moore, W. E. C. Moore, R. G. E. Murray, E. Stackebrandt, M. P. Starr, and H. G. Trüper. 1987. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37:463-464.
43. Wong, R. S., and A. W. Chow. 2002. Identification of enteric pathogens by heat shock protein 60 kDa (HSP60) gene sequences. FEMS Microbiol. Lett. 206:107-113.