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Volumn 72, Issue 6, 2006, Pages 3960-3967

Rapid one-step quantitative reverse transcriptase PCR assay with competitive internal positive control for detection of enteroviruses in environmental samples

Author keywords

[No Author keywords available]

Indexed keywords

BIOASSAY; CONTAMINATION; ENZYME INHIBITION; GENES; HEALTH RISKS; WATER;

EID: 33745143946     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02291-05     Document Type: Article
Times cited : (110)

References (29)
  • 2
    • 5444258598 scopus 로고    scopus 로고
    • Validating internal controls for quantitative plant gene expression studies
    • Brunner, A. M., I. A. Yakovlev, and S. H. Strauss. 2004. Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol. 4:14-20.
    • (2004) BMC Plant Biol. , vol.4 , pp. 14-20
    • Brunner, A.M.1    Yakovlev, I.A.2    Strauss, S.H.3
  • 4
    • 23744500070 scopus 로고    scopus 로고
    • Rapid detection of enteroviruses in small volumes of natural waters by real-time quantitative reverse transcriptase PCR
    • Fuhrman, J. A., X. Liang, and R. T. Noble. 2005. Rapid detection of enteroviruses in small volumes of natural waters by real-time quantitative reverse transcriptase PCR. Appl. Environ. Microbiol. 71:4523-4530.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 4523-4530
    • Fuhrman, J.A.1    Liang, X.2    Noble, R.T.3
  • 5
    • 33745170615 scopus 로고    scopus 로고
    • Comparison of one-step and two-step quantitative reverse transcriptase PCR assays for the detection of enteroviruses in environmental samples
    • abstr. Q-417. Abstr. 2004. American Society for Microbiology, Washington, D.C.
    • Gregory, J. B., and R. T. Noble. 2004. Comparison of one-step and two-step quantitative reverse transcriptase PCR assays for the detection of enteroviruses in environmental samples, p. 575, abstr. Q-417. Abstr. 104th Gen. Meet. Am. Soc. Microbiol. 2004. American Society for Microbiology, Washington, D.C.
    • (2004) 104th Gen. Meet. Am. Soc. Microbiol. , pp. 575
    • Gregory, J.B.1    Noble, R.T.2
  • 6
    • 0032863422 scopus 로고    scopus 로고
    • Detection of viral pathogens by reverse transcriptase PCR and of microbial indicators by standard methods in the canals of the Florida Keys
    • Griffin, D. W., C. J. Gibson III, E. K. Lipp, K. Riley, J. H. Paul III, and J. B. Rose. 1999. Detection of viral pathogens by reverse transcriptase PCR and of microbial indicators by standard methods in the canals of the Florida Keys. Appl. Environ. Microbiol. 65:4118-4125.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4118-4125
    • Griffin, D.W.1    Gibson III, C.J.2    Lipp, E.K.3    Riley, K.4    Paul III, J.H.5    Rose, J.B.6
  • 7
    • 13544256490 scopus 로고    scopus 로고
    • Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis
    • Haugland, R. A., S. C. Siefring, L. J. Wymer, K. P. Brenner, and A. P. Dufour. 2005. Comparison of Enterococcus measurements in freshwater at two recreational beaches by quantitative polymerase chain reaction and membrane filter culture analysis. Water Res. 39:559-568.
    • (2005) Water Res. , vol.39 , pp. 559-568
    • Haugland, R.A.1    Siefring, S.C.2    Wymer, L.J.3    Brenner, K.P.4    Dufour, A.P.5
  • 8
    • 0035163073 scopus 로고    scopus 로고
    • Human adenoviruses and coliphages in urban runoff-impacted coastal waters of Southern California
    • Jiang, S., R. Noble, and W. Chu. 2001. Human adenoviruses and coliphages in urban runoff-impacted coastal waters of Southern California. Appl. Environ. Microbiol. 67:179-184.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 179-184
    • Jiang, S.1    Noble, R.2    Chu, W.3
  • 9
    • 3042742573 scopus 로고    scopus 로고
    • PCR detection of pathogenic viruses in southern California urban rivers
    • Jiang, S. C., and W. Chu. 2004. PCR detection of pathogenic viruses in southern California urban rivers. J. Appl. Microbiol. 97:17-28.
    • (2004) J. Appl. Microbiol. , vol.97 , pp. 17-28
    • Jiang, S.C.1    Chu, W.2
  • 10
    • 20444382331 scopus 로고    scopus 로고
    • Development and evaluation of a broadly reactive TaqMan assay for rapid detection of hepatitis A virus
    • Jothikumar, N., T. L. Cromeans, M. D. Sobsey, and B. H. Robertson. 2005. Development and evaluation of a broadly reactive TaqMan assay for rapid detection of hepatitis A virus. Appl. Environ. Microbiol. 71:3359-3363.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 3359-3363
    • Jothikumar, N.1    Cromeans, T.L.2    Sobsey, M.D.3    Robertson, B.H.4
  • 11
    • 17444430427 scopus 로고    scopus 로고
    • Rapid and sensitive detection of noroviruses by using TaqMan-based one-step reverse transcription-PCR assays and application to naturally contaminated shellfish samples
    • Jothikumar, N., J. A. Lowther, K. Henshilwood, D. N. Lees, V. R. Hill, and J. Vinje. 2005. Rapid and sensitive detection of noroviruses by using TaqMan-based one-step reverse transcription-PCR assays and application to naturally contaminated shellfish samples. Appl. Environ. Microbiol. 71:1870-1875.
    • (2005) Appl. Environ. Microbiol. , vol.71 , pp. 1870-1875
    • Jothikumar, N.1    Lowther, J.A.2    Henshilwood, K.3    Lees, D.N.4    Hill, V.R.5    Vinje, J.6
  • 13
    • 0038628891 scopus 로고    scopus 로고
    • Applications of competitor RNA in diagnostic reverse transcription-PCR
    • Kleiboeker, S. B. 2003. Applications of competitor RNA in diagnostic reverse transcription-PCR. J. Clin. Microbiol. 41:2055-2061.
    • (2003) J. Clin. Microbiol. , vol.41 , pp. 2055-2061
    • Kleiboeker, S.B.1
  • 14
    • 0033081270 scopus 로고    scopus 로고
    • Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA
    • Koonjul, P. K., W. F. Brandt, J. M. Farrant, and G. G. Lindsey. 1999. Inclusion of polyvinylpyrrolidone in the polymerase chain reaction reverses the inhibitory effects of polyphenolic contamination of RNA. Nucleic Acids Res. 27:915-916.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 915-916
    • Koonjul, P.K.1    Brandt, W.F.2    Farrant, J.M.3    Lindsey, G.G.4
  • 15
    • 0030048084 scopus 로고    scopus 로고
    • Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein
    • Kreader, C. A. 1996. Relief of amplification inhibition in PCR with bovine serum albumin or T4 gene 32 protein. Appl. Environ. Microbiol. 62:1102-1106.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1102-1106
    • Kreader, C.A.1
  • 16
    • 0018856315 scopus 로고
    • Infectivity titers of enterovirus as found in human stools
    • Melnick, J. L., and V. Rennick. 1980. Infectivity titers of enterovirus as found in human stools. J. Med. Virol. 5:205-220.
    • (1980) J. Med. Virol. , vol.5 , pp. 205-220
    • Melnick, J.L.1    Rennick, V.2
  • 17
    • 0036053184 scopus 로고    scopus 로고
    • Application of a real-time polymerase chain reaction with internal positive control for detection and quantification of enterovirus in cerebrospinal fluid
    • Monpoeho, S., M. Coste-Burel, M. Costa-Mattioli, B. Besse, J. J. Chomel, S. Billaudel, and V. Ferre. 2002. Application of a real-time polymerase chain reaction with internal positive control for detection and quantification of enterovirus in cerebrospinal fluid. Eur. J. Clin. Microbiol. Infect. Dis. 21: 532-536.
    • (2002) Eur. J. Clin. Microbiol. Infect. Dis. , vol.21 , pp. 532-536
    • Monpoeho, S.1    Coste-Burel, M.2    Costa-Mattioli, M.3    Besse, B.4    Chomel, J.J.5    Billaudel, S.6    Ferre, V.7
  • 19
    • 0035885886 scopus 로고    scopus 로고
    • Enteroviruses detected by reverse transcriptase polymerase chain reaction from the coastal waters of Santa Monica Bay, California: Low correlation to bacterial indicator levels
    • Noble, R. T., and J. A. Fuhrman. 2001. Enteroviruses detected by reverse transcriptase polymerase chain reaction from the coastal waters of Santa Monica Bay, California: low correlation to bacterial indicator levels. Hydrobiologia 460:175-184.
    • (2001) Hydrobiologia , vol.460 , pp. 175-184
    • Noble, R.T.1    Fuhrman, J.A.2
  • 20
    • 0001679973 scopus 로고    scopus 로고
    • Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria
    • Noble, R. T., and J. A. Fuhrman. 1998. Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria. Aquat. Microb. Ecol. 14:113-118.
    • (1998) Aquat. Microb. Ecol. , vol.14 , pp. 113-118
    • Noble, R.T.1    Fuhrman, J.A.2
  • 22
    • 0033020133 scopus 로고    scopus 로고
    • Molecular evolution of the human enteroviruses: Correlation of serotype with VP1 sequence and application to picornavirus classification
    • Oberste, M. S., K. Maher, D. R. Kilpatrick, and M. A. Pallansch. 1999. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. J. Virol. 73:1941-1948.
    • (1999) J. Virol. , vol.73 , pp. 1941-1948
    • Oberste, M.S.1    Maher, K.2    Kilpatrick, D.R.3    Pallansch, M.A.4
  • 23
    • 4444228253 scopus 로고    scopus 로고
    • Development of homologous viral internal controls for use in RT-PCR assays of waterborne enteric viruses
    • Parshionikar, S. U., J. Cashdollar, and G. S. Fout. 2004. Development of homologous viral internal controls for use in RT-PCR assays of waterborne enteric viruses. J. Virol. Methods 121:39-48.
    • (2004) J. Virol. Methods , vol.121 , pp. 39-48
    • Parshionikar, S.U.1    Cashdollar, J.2    Fout, G.S.3
  • 24
    • 0032786275 scopus 로고    scopus 로고
    • Reverse-transcription polymerase chain reaction detection of the enteroviruses
    • Romero, J. R. 1999. Reverse-transcription polymerase chain reaction detection of the enteroviruses. Arch. Pathol. Lab. Med. 123:1161-1169.
    • (1999) Arch. Pathol. Lab. Med. , vol.123 , pp. 1161-1169
    • Romero, J.R.1
  • 25
    • 33745143841 scopus 로고    scopus 로고
    • Environmentally transmitted pathogens
    • R. M. Maier, I. L. Pepper, and C. P. Gerba (ed.). Academic Press, Inc., San Diego, Calif.
    • Rusin, P., C. E. Enriquez, D. Johnson, and C. P. Gerba. 1999. Environmentally transmitted pathogens, p. 475-476. In R. M. Maier, I. L. Pepper, and C. P. Gerba (ed.), Environmental microbiology. Academic Press, Inc., San Diego, Calif.
    • (1999) Environmental Microbiology , pp. 475-476
    • Rusin, P.1    Enriquez, C.E.2    Johnson, D.3    Gerba, C.P.4
  • 26
    • 2142805221 scopus 로고    scopus 로고
    • Molecular surveillance of enterovirus and Norwalk-like virus in oysters relocated to a municipal-sewage-impacted gulf estuary
    • Shieh, Y. C., R. S. Baric, J. W. Woods, and K. R. Calci. 2003. Molecular surveillance of enterovirus and Norwalk-like virus in oysters relocated to a municipal-sewage-impacted gulf estuary. Appl. Environ. Microbiol. 69:7130-7136.
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 7130-7136
    • Shieh, Y.C.1    Baric, R.S.2    Woods, J.W.3    Calci, K.R.4
  • 27
    • 3042563900 scopus 로고    scopus 로고
    • Survival of infectious Poliovirus-1 in river water compared to the persistence of somatic coliphages, thermotolerant coliforms, and Poliovirus-1 genome
    • Skraber, S., B. Gassilloud, L. Schwartzbrod, and C. Gantzer. 2004. Survival of infectious Poliovirus-1 in river water compared to the persistence of somatic coliphages, thermotolerant coliforms, and Poliovirus-1 genome. Water Res. 38:2927-2933.
    • (2004) Water Res. , vol.38 , pp. 2927-2933
    • Skraber, S.1    Gassilloud, B.2    Schwartzbrod, L.3    Gantzer, C.4
  • 28
    • 0027369807 scopus 로고
    • Simple method of concentrating enteroviruses and hepatitis a virus from sewage and ocean water for rapid detection by reverse transcriptase-polymerase chain reaction
    • Tsai, Y. L., M. D. Sobsey, L. R. Sangermano, and C. J. Palmer. 1993. Simple method of concentrating enteroviruses and hepatitis A virus from sewage and ocean water for rapid detection by reverse transcriptase-polymerase chain reaction. Appl. Environ. Microbiol. 59:3488-3491.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 3488-3491
    • Tsai, Y.L.1    Sobsey, M.D.2    Sangermano, L.R.3    Palmer, C.J.4
  • 29
    • 1642305470 scopus 로고    scopus 로고
    • Presence, infectivity, and stability of enteric viruses in seawater: Relationship to marine water quality in the Florida Keys
    • Wetz, J. J., E. K. Lipp, D. W. Griffin, J. Lukasik, D. Wait, M. D. Sobsey, T. M. Scott, and J. B. Rose. 2004. Presence, infectivity, and stability of enteric viruses in seawater: relationship to marine water quality in the Florida Keys. Mar. Pollut. Bull. 48:698-704.
    • (2004) Mar. Pollut. Bull. , vol.48 , pp. 698-704
    • Wetz, J.J.1    Lipp, E.K.2    Griffin, D.W.3    Lukasik, J.4    Wait, D.5    Sobsey, M.D.6    Scott, T.M.7    Rose, J.B.8


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