메뉴 건너뛰기




Volumn 34, Issue 10, 2006, Pages 2878-2886

The naturally occurring N6-threonyl adenine in anticodon loop of Schizosaccharomyces pombe tRNAi causes formation of a unique U-turn motif

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE DERIVATIVE; LYSINE; TRANSFER RNA; ADENINE; DRUG DERIVATIVE; FUNGAL RNA; LYSINE TRANSFER RNA; METHIONINE TRANSFER RNA; N (PURIN 6 YLCARBAMOYL)THREONINE; N-(PURIN-6-YLCARBAMOYL)THREONINE; THREONINE;

EID: 33745126327     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl081     Document Type: Article
Times cited : (34)

References (47)
  • 1
    • 0020570527 scopus 로고
    • Comparison of initiation of protein synthesis in prokaryotes, eukaryotes and organelles
    • Kozak,M. (1983) Comparison of initiation of protein synthesis in prokaryotes, eukaryotes and organelles. Microbiol. Rev., 47, 1-45.
    • (1983) Microbiol. Rev. , vol.47 , pp. 1-45
    • Kozak, M.1
  • 2
    • 0014951549 scopus 로고
    • Cytoplasmatic methionine transfer RNAs from eukaryotes
    • Smith,A.E. and Marcker,K.A. (1970). Cytoplasmatic methionine transfer RNAs from eukaryotes. Nature, 226, 607-610.
    • (1970) Nature , vol.226 , pp. 607-610
    • Smith, A.E.1    Marcker, K.A.2
  • 3
    • 0033061571 scopus 로고    scopus 로고
    • Initiation of translation in prokaryotes and eukaryotes
    • Kozak,M. (1999) Initiation of translation in prokaryotes and eukaryotes. Gene, 234, 167-208.
    • (1999) Gene , vol.234 , pp. 167-208
    • Kozak, M.1
  • 5
    • 0032795785 scopus 로고    scopus 로고
    • Discrimination by - Initiation factor IF3 against initiation on non-canonical codons relies on complementarity rules
    • Meinnel,T., Sacerdot,C., Graffe,M., Blanquet,S. and Springer,M. (1999) Discrimination by - initiation factor IF3 against initiation on non-canonical codons relies on complementarity rules. J. Mol. Biol., 390, 825-837.
    • (1999) J. Mol. Biol. , vol.390 , pp. 825-837
    • Meinnel, T.1    Sacerdot, C.2    Graffe, M.3    Blanquet, S.4    Springer, M.5
  • 6
    • 0024280899 scopus 로고
    • Met-tRNAi functions in directing the scanning ribosome to the start site of translation
    • Cigan,A.M., Feng,L. and Donahue,T.F. (1988) met-tRNAi functions in directing the scanning ribosome to the start site of translation. Science, 242, 93-97.
    • (1988) Science , vol.242 , pp. 93-97
    • Cigan, A.M.1    Feng, L.2    Donahue, T.F.3
  • 7
    • 0014423983 scopus 로고
    • Nucleotide sequence of N-formyl-methionyl-transfer RNA
    • Dube,S., K, Marcker,K.A., Clark,B.F.C. and Cory,S. (1968) Nucleotide sequence of N-formyl-methionyl-transfer RNA. Nature, 218, 232-233.
    • (1968) Nature , vol.218 , pp. 232-233
    • Dube, S.1    Marcker, K.K.A.2    Clark, B.F.C.3    Cory, S.4
  • 8
    • 0017814289 scopus 로고
    • AUG is the only recognisable signal sequence in the 5′ non-coding regions of eukaryotic mRNA
    • Baralle,F.E. and Brownlee,G.G. (1978) AUG is the only recognisable signal sequence in the 5′ non-coding regions of eukaryotic mRNA. Nature, 274, 84-87.
    • (1978) Nature , vol.274 , pp. 84-87
    • Baralle, F.E.1    Brownlee, G.G.2
  • 9
    • 0023042012 scopus 로고
    • Information content of binding sites on nucleotide sequences
    • Schenieder,T.D., Stormo,G.D., Gold,L. and Ehrenfeucht,A. (1986) Information content of binding sites on nucleotide sequences. J. Mol. Biol., 188, 415-431.
    • (1986) J. Mol. Biol. , vol.188 , pp. 415-431
    • Schenieder, T.D.1    Stormo, G.D.2    Gold, L.3    Ehrenfeucht, A.4
  • 10
    • 0019355045 scopus 로고
    • Effect of threonylcarbamoyl modification (t6A) in yeast tRNAArgIII on codon-anticodon and anticodon-anticodon interactions
    • Weissenbach,J. and Grosjean,H. (1981) Effect of threonylcarbamoyl modification (t6A) in yeast tRNAArgIII on codon-anticodon and anticodon-anticodon interactions. Eur. J. Biochem., 116, 207-213.
    • (1981) Eur. J. Biochem. , vol.116 , pp. 207-213
    • Weissenbach, J.1    Grosjean, H.2
  • 13
    • 0031552368 scopus 로고    scopus 로고
    • On the conformation of the anticodon loops of initiator and elongator methionine tRNAs
    • Schweisguth,D.C. and Moore,P.B. (1997) On the conformation of the anticodon loops of initiator and elongator methionine tRNAs. J. Mol. Biol., 267, 505-519.
    • (1997) J. Mol. Biol. , vol.267 , pp. 505-519
    • Schweisguth, D.C.1    Moore, P.B.2
  • 14
    • 0025815046 scopus 로고
    • The 3 A crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination
    • Basavappa,R. and Sigler,P.B. (1991) The 3 A crystal structure of yeast initiator tRNA: Functional implications in initiator/elongator discrimination. EMBO J., 10, 3105-3111.
    • (1991) EMBO J. , vol.10 , pp. 3105-3111
    • Basavappa, R.1    Sigler, P.B.2
  • 16
    • 33845555707 scopus 로고
    • Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences
    • Plateau,P. and Gueron,M. (1982) Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences. J. Am. Chem. Soc., 104, 7310-7311.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 7310-7311
    • Plateau, P.1    Gueron, M.2
  • 17
    • 0026951903 scopus 로고
    • Gradient-tailored excitation for single-quantum NMR-spectroscopy of aqueous-solutions
    • Piotto,M., Saudek,V. and Sklenar,V. (1992) Gradient-tailored excitation for single-quantum NMR-spectroscopy of aqueous-solutions. J. Biomol. NMR, 2, 661-665.
    • (1992) J. Biomol. NMR , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.3
  • 19
    • 5144233105 scopus 로고
    • Mlev-17-based two-dimensional homonuclear magnetization transfer spectroscopy
    • Bax,A. and Davis,D.G. (1985) Mlev-17-based two-dimensional homonuclear magnetization transfer spectroscopy. J. Magn. Reson., 65, 355-360.
    • (1985) J. Magn. Reson. , vol.65 , pp. 355-360
    • Bax, A.1    Davis, D.G.2
  • 20
    • 0343359244 scopus 로고
    • Investigation of exchange processes by 2-dimensional NMR-spectroscopy
    • Jeener,J., Meier,B.H., Bachmann,P. and Ernst,R.R. (1979) Investigation of exchange processes by 2-dimensional NMR-spectroscopy. J. Chem. Phys., 71, 4540-4555.
    • (1979) J. Chem. Phys. , vol.71 , pp. 4540-4555
    • Jeener, J.1    Meier, B.H.2    Bachmann, P.3    Ernst, R.R.4
  • 21
    • 33748476849 scopus 로고
    • Suppression of cross relaxation effects in TOCSY spectra via a modified DIPSI-2 mixing sequence
    • Cavanagh,J. and Rance,M. (1992) Suppression of cross relaxation effects in TOCSY spectra via a modified DIPSI-2 mixing sequence. J. Magn. Reson., 96, 670-678.
    • (1992) J. Magn. Reson. , vol.96 , pp. 670-678
    • Cavanagh, J.1    Rance, M.2
  • 22
    • 0023046345 scopus 로고
    • Assignment of the P-31 and H-1 resonances in oligonucleotides by two-dimensional NMR-spectroscopy
    • Sklenar,V., Miyashiro,H., Zon,G., Miles,H.T. and Bax,A. (1986) Assignment of the P-31 and H-1 resonances in oligonucleotides by two-dimensional NMR-spectroscopy. Febs Lett., 208, 94-98.
    • (1986) Febs Lett. , vol.208 , pp. 94-98
    • Sklenar, V.1    Miyashiro, H.2    Zon, G.3    Miles, H.T.4    Bax, A.5
  • 24
    • 0000353016 scopus 로고    scopus 로고
    • The use of NMR methods for conformational studies of nucleic acids
    • Wijmenga,S. and van Buuren,B.N.M. (1998) The use of NMR methods for conformational studies of nucleic acids. Prog. Nucl. Mag. Res. Sp., 32, 287-387.
    • (1998) Prog. Nucl. Mag. Res. Sp. , vol.32 , pp. 287-387
    • Wijmenga, S.1    van Buuren, B.N.M.2
  • 25
    • 0000594421 scopus 로고
    • Principles of nucleic acid structure
    • In Cantor,C.R. (ed.), Springer Verlag, New York
    • Saenger,W. (1984) Principles of nucleic acid structure. In Cantor,C.R. (ed.), Springer Advanced Texts in Chemistry. Springer Verlag, New York.
    • (1984) Springer Advanced Texts in Chemistry
    • Saenger, W.1
  • 28
    • 0030621858 scopus 로고    scopus 로고
    • Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation
    • Stein,E.G., Rice,L.M. and Brunger,A.T. (1997) Torsion-angle molecular dynamics as a new efficient tool for NMR structure calculation. J. Magn. Reson., 124, 154-164.
    • (1997) J. Magn. Reson. , vol.124 , pp. 154-164
    • Stein, E.G.1    Rice, L.M.2    Brunger, A.T.3
  • 29
    • 0034698001 scopus 로고    scopus 로고
    • A-form conformational motifs in ligand-bound DNA structures
    • Lu,X.J., Shakked,Z. and Olson,W.K. (2000) A-form conformational motifs in ligand-bound DNA structures. J. Mol. Biol., 300, 819-840.
    • (2000) J. Mol. Biol. , vol.300 , pp. 819-840
    • Lu, X.J.1    Shakked, Z.2    Olson, W.K.3
  • 30
    • 0030729838 scopus 로고    scopus 로고
    • An extensively modified version of molscript that includes generally enhanced colouring capabilities
    • Esnouf,R.M. (1997) An extensively modified version of molscript that includes generally enhanced colouring capabilities. J. Mol. Graph. Model., 15, 132-134.
    • (1997) J. Mol. Graph. Model. , vol.15 , pp. 132-134
    • Esnouf, R.M.1
  • 32
    • 0001123057 scopus 로고
    • NMR of nucleic acids; from spectrum to structure
    • In Roberts,G.C.K. (ed.) Oxford University Press, NY
    • Wijmenga,S.S., Mooren,M.W. and Hilbers,C.W. (1993) NMR of nucleic acids; from spectrum to structure. In Roberts,G.C.K. (ed.) NMR of Macromolecules. A Practical Approach. Oxford University Press, NY, pp. 217-288.
    • (1993) NMR of Macromolecules. A Practical Approach , pp. 217-288
    • Wijmenga, S.S.1    Mooren, M.W.2    Hilbers, C.W.3
  • 33
    • 0030596092 scopus 로고    scopus 로고
    • A network of heterogeneous hydrogen bonds in GNRA tetraloops
    • Jucker,F.M., Heus,H.A., Yip,P.F., Moors,E.H. and Pardi,A. (1996) A network of heterogeneous hydrogen bonds in GNRA tetraloops. J. Mol. Biol., 264, 968-980.
    • (1996) J. Mol. Biol. , vol.264 , pp. 968-980
    • Jucker, F.M.1    Heus, H.A.2    Yip, P.F.3    Moors, E.H.4    Pardi, A.5
  • 35
    • 0034786589 scopus 로고    scopus 로고
    • Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation
    • Cromsigt,J.A.M.T.C., Hilbers,C.W. and Wijmenga,S.S. (2001) Prediction of proton chemical shifts in RNA. Their use in structure refinement and validation. J. Biomol. NMR, 21, 11-29.
    • (2001) J. Biomol. NMR , vol.21 , pp. 11-29
    • Cromsigt, J.A.M.T.C.1    Hilbers, C.W.2    Wijmenga, S.S.3
  • 36
    • 0024803414 scopus 로고
    • Analysis of magnesium, europium and lead binding sites in methionine initiator and elongator tRNA's by specific metal-ion-induced cleavages
    • Ciesiolka,J., Wresinski,J., Gornicki,P., Podkowinski,J. and Krzyzosiak,W.J. (1989) Analysis of magnesium, europium and lead binding sites in methionine initiator and elongator tRNA's by specific metal-ion-induced cleavages. Eur. J. Biochem., 186, 71-77.
    • (1989) Eur. J. Biochem. , vol.186 , pp. 71-77
    • Ciesiolka, J.1    Wresinski, J.2    Gornicki, P.3    Podkowinski, J.4    Krzyzosiak, W.J.5
  • 37
    • 0033971758 scopus 로고    scopus 로고
    • Database of non-canonical base pairs found in known RNA structures
    • Nagaswamy,U., Voss,N., Zhang,Z. and Fox,G.E. (2000) Database of non-canonical base pairs found in known RNA structures. Nucleic Acids Res., 28, 375-376.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 375-376
    • Nagaswamy, U.1    Voss, N.2    Zhang, Z.3    Fox, G.E.4
  • 38
    • 0024539180 scopus 로고
    • Defining the structure of irregular nucleic acids, conventions and principles
    • Lavery,R. and Sklenar,H. (1989) Defining the structure of irregular nucleic acids, conventions and principles, J. Biomol. Struct. Dyn., 6, 655-667.
    • (1989) J. Biomol. Struct. Dyn. , vol.6 , pp. 655-667
    • Lavery, R.1    Sklenar, H.2
  • 39
    • 0033523082 scopus 로고    scopus 로고
    • Structural features of single-base bulgesin A-form DNA and RNA using a hierachical approach and energetic evaluation with a continuum solvent model
    • Zacharias,M. and Sklenar,H. (1999) Structural features of single-base bulgesin A-form DNA and RNA using a hierachical approach and energetic evaluation with a continuum solvent model. J. Mol. Biol., 289, 261-275.
    • (1999) J. Mol. Biol. , vol.289 , pp. 261-275
    • Zacharias, M.1    Sklenar, H.2
  • 40
    • 0029998660 scopus 로고    scopus 로고
    • Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs
    • Huang,S., Wang,Y. and Draper,D. (1996) Structure of a hexanucleotide RNA hairpin loop conserved in ribosomal RNAs. J. Mol. Biol., 258, 308-321.
    • (1996) J. Mol. Biol. , vol.258 , pp. 308-321
    • Huang, S.1    Wang, Y.2    Draper, D.3
  • 41
    • 0029954443 scopus 로고    scopus 로고
    • Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA
    • Fountain,M.A., Serra,M.J., Krugh,T.R. and Turner,D.H. (1996) Structural features of a six-nucleotide RNA hairpin loop found in ribosomal RNA. Biochemistry, 35, 6539-6548.
    • (1996) Biochemistry , vol.35 , pp. 6539-6548
    • Fountain, M.A.1    Serra, M.J.2    Krugh, T.R.3    Turner, D.H.4
  • 44
    • 0033534387 scopus 로고    scopus 로고
    • Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and pseudouridine
    • Durant,Ph.C. and Davis,D.R. (1999) Stabilization of the anticodon stem-loop of tRNALys,3 by an A+-C base-pair and pseudouridine. J. Mol. Biol., 265, 115-131.
    • (1999) J. Mol. Biol. , vol.265 , pp. 115-131
    • Durant, Ph.C.1    Davis, D.R.2
  • 45
    • 0034680364 scopus 로고    scopus 로고
    • Hypermodified nucleosides in the anticodon of lys-tRNA stabilize a canonical U-turn structure
    • Sundaram,M., Durant,P. and Davis,D.R. (2000) Hypermodified nucleosides in the anticodon of lys-tRNA stabilize a canonical U-turn structure. Biochemistry, 39, 12575-12584.
    • (2000) Biochemistry , vol.39 , pp. 12575-12584
    • Sundaram, M.1    Durant, P.2    Davis, D.R.3
  • 46
    • 0033744175 scopus 로고    scopus 로고
    • The crystal structure of HIV-reverse-transcription primer tRNA(lys,3) shows a canonical anticodon loop
    • Bénas,P., Bec,G., Keith,G., Marquet,R., Ehresmann,C., Ehresmann,B. and Dumas,P. (2000) The crystal structure of HIV-reverse-transcription primer tRNA(lys,3) shows a canonical anticodon loop. RNA, 6, 1347-1355.
    • (2000) RNA , vol.6 , pp. 1347-1355
    • Bénas, P.1    Bec, G.2    Keith, G.3    Marquet, R.4    Ehresmann, C.5    Ehresmann, B.6    Dumas, P.7
  • 47
    • 0031023569 scopus 로고    scopus 로고
    • Identification of 2′-hydroxylgroups required for interaction of tRNA anticodon stem-loop region with the ribosome
    • von Ahsen,W., Green,R., Schroeder,R. and Noller,H.F. (1997) Identification of 2′-hydroxylgroups required for interaction of tRNA anticodon stem-loop region with the ribosome. RNA, 3, 49-56.
    • (1997) RNA , vol.3 , pp. 49-56
    • von Ahsen, W.1    Green, R.2    Schroeder, R.3    Noller, H.F.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.