-
1
-
-
0029093770
-
Using oligonucleotide probe arrays to access genetic diversity
-
Lipshutz RJ, Morris D, Chee M, Hubbell E, Kozal MJ, Shah N, Shen N, Yang R, Fodor SP. Using oligonucleotide probe arrays to access genetic diversity. Biotechniques 1995;19:442-447.
-
(1995)
Biotechniques
, vol.19
, pp. 442-447
-
-
Lipshutz, R.J.1
Morris, D.2
Chee, M.3
Hubbell, E.4
Kozal, M.J.5
Shah, N.6
Shen, N.7
Yang, R.8
Fodor, S.P.9
-
2
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995;270:467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
3
-
-
0034598746
-
Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling
-
Alizadeh AA, Eisen MB, Davis RE, Ma C, Lossos IS, Rosenwald A, Boldrick JC, Sabet H, Tran T, Yu X, et al. Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling. Nature 2000;403:503-511.
-
(2000)
Nature
, vol.403
, pp. 503-511
-
-
Alizadeh, A.A.1
Eisen, M.B.2
Davis, R.E.3
Ma, C.4
Lossos, I.S.5
Rosenwald, A.6
Boldrick, J.C.7
Sabet, H.8
Tran, T.9
Yu, X.10
-
4
-
-
2342587416
-
Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes
-
Lossos IS, Czerwinski DK, Alizadeh AA, Wechser MA, Tibshirani R, Botstein D, Levy R. Prediction of survival in diffuse large-B-cell lymphoma based on the expression of six genes. N Engl J Med 2004;350:1828-1837.
-
(2004)
N Engl J Med
, vol.350
, pp. 1828-1837
-
-
Lossos, I.S.1
Czerwinski, D.K.2
Alizadeh, A.A.3
Wechser, M.A.4
Tibshirani, R.5
Botstein, D.6
Levy, R.7
-
5
-
-
15944381195
-
Distinct IL-4-induced gene expression, proliferation, and intracellular signaling in germinal center B-cell-like and activated B-cell-like diffuse large-cell lymphomas
-
Lu X, Nechushtan H, Ding F, Rosado MF, Singal R, Alizadeh AA, Lossos IS. Distinct IL-4-induced gene expression, proliferation, and intracellular signaling in germinal center B-cell-like and activated B-cell-like diffuse large-cell lymphomas. Blood 2005;105:2924-2932.
-
(2005)
Blood
, vol.105
, pp. 2924-2932
-
-
Lu, X.1
Nechushtan, H.2
Ding, F.3
Rosado, M.F.4
Singal, R.5
Alizadeh, A.A.6
Lossos, I.S.7
-
6
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van 't Veer LJ, Dai H, van de Vijver MJ, He YD, Hart AA, Mao M, Peterse HL, van der Kooy K, Marton MJ, Witteveen AT, et al. Gene expression profiling predicts clinical outcome of breast cancer. Nature 2002;415:530-536.
-
(2002)
Nature
, vol.415
, pp. 530-536
-
-
Van 't Veer, L.J.1
Dai, H.2
Van De Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
Van Der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
-
7
-
-
0037137519
-
A gene-expression signature as a predictor of survival in breast cancer
-
van de Vijver MJ, He YD, van't Veer LJ, Dai H, Hart AA, Voskuil DW, Schreiber GJ, Peterse JL, Roberts C, Marton MJ, et al. A gene-expression signature as a predictor of survival in breast cancer. N Engl J Med 2002;347:1999-2009.
-
(2002)
N Engl J Med
, vol.347
, pp. 1999-2009
-
-
Van De Vijver, M.J.1
He, Y.D.2
Van't Veer, L.J.3
Dai, H.4
Hart, A.A.5
Voskuil, D.W.6
Schreiber, G.J.7
Peterse, J.L.8
Roberts, C.9
Marton, M.J.10
-
8
-
-
25444479744
-
Breast cancer bone metastasis mediated by the Smad tumor suppressor pathway
-
Kang Y, He W, Tulley S, Gupta GP, Serganova I, Chen CR, Manova-Todorova K, Blasberg R, Gerald WL, Massague J. Breast cancer bone metastasis mediated by the Smad tumor suppressor pathway. Proc Natl Acad Sci USA 2005;102:13909-13914.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13909-13914
-
-
Kang, Y.1
He, W.2
Tulley, S.3
Gupta, G.P.4
Serganova, I.5
Chen, C.R.6
Manova-Todorova, K.7
Blasberg, R.8
Gerald, W.L.9
Massague, J.10
-
9
-
-
23144461051
-
Genes that mediate breast cancer metastasis to lung
-
Minn AJ, Gupta GP, Siegel PM, Bos PD, Shu W, Giri DD, Viale A, Olshen AB, Gerald WL, Massague J. Genes that mediate breast cancer metastasis to lung. Nature 2005;436:518-524.
-
(2005)
Nature
, vol.436
, pp. 518-524
-
-
Minn, A.J.1
Gupta, G.P.2
Siegel, P.M.3
Bos, P.D.4
Shu, W.5
Giri, D.D.6
Viale, A.7
Olshen, A.B.8
Gerald, W.L.9
Massague, J.10
-
10
-
-
13444268127
-
Distinct organ-specific metastatic potential of individual breast cancer cells and primary tumors
-
Minn AJ, Kang Y, Serganova I, Gupta GP, Giri DD, Doubrovin M, Ponomarev V, Gerald WL, Blasberg R, Massague J. Distinct organ-specific metastatic potential of individual breast cancer cells and primary tumors. J Clin Invest 2005;115:44-55.
-
(2005)
J Clin Invest
, vol.115
, pp. 44-55
-
-
Minn, A.J.1
Kang, Y.2
Serganova, I.3
Gupta, G.P.4
Giri, D.D.5
Doubrovin, M.6
Ponomarev, V.7
Gerald, W.L.8
Blasberg, R.9
Massague, J.10
-
11
-
-
11244258643
-
An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis
-
Sweet-Cordero A, Mukherjee S, Subramanian A, You H, Roix JJ, Ladd-Acosta C, Mesirov J, Golub TR, Jacks T. An oncogenic KRAS2 expression signature identified by cross-species gene-expression analysis. Nat Genet 2005;37:48-55.
-
(2005)
Nat Genet
, vol.37
, pp. 48-55
-
-
Sweet-Cordero, A.1
Mukherjee, S.2
Subramanian, A.3
You, H.4
Roix, J.J.5
Ladd-Acosta, C.6
Mesirov, J.7
Golub, T.R.8
Jacks, T.9
-
12
-
-
18544365698
-
Gene-expression profiles predict survival of patients with lung adenocarcinoma
-
Beer DG, Kardia SL, Huang CC, Giordano TJ, Levin AM, Misek DE, Lin L, Chen G, Gharib TG, Thomas DG, et al. Gene-expression profiles predict survival of patients with lung adenocarcinoma. Nat Med 2002;8:816-824.
-
(2002)
Nat Med
, vol.8
, pp. 816-824
-
-
Beer, D.G.1
Kardia, S.L.2
Huang, C.C.3
Giordano, T.J.4
Levin, A.M.5
Misek, D.E.6
Lin, L.7
Chen, G.8
Gharib, T.G.9
Thomas, D.G.10
-
13
-
-
0037142053
-
The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma
-
Rosenwald A, Wright G, Chan WC, Connors JM, Campo E, Fisher RI, Gascoyne RD, Muller-Hermelink HK, Smeland EB, Giltnane JM, et al. The use of molecular profiling to predict survival after chemotherapy for diffuse large-B-cell lymphoma. N Engl J Med 2002;346:1937-1947.
-
(2002)
N Engl J Med
, vol.346
, pp. 1937-1947
-
-
Rosenwald, A.1
Wright, G.2
Chan, W.C.3
Connors, J.M.4
Campo, E.5
Fisher, R.I.6
Gascoyne, R.D.7
Muller-Hermelink, H.K.8
Smeland, E.B.9
Giltnane, J.M.10
-
14
-
-
19044399684
-
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
-
Yeoh EJ, Ross ME, Shurtleff SA, Williams WK, Patel D, Mahfouz R, Behm FG, Raimondi SC, Relling MV, Patel A, et al. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 2002;1:133-143.
-
(2002)
Cancer Cell
, vol.1
, pp. 133-143
-
-
Yeoh, E.J.1
Ross, M.E.2
Shurtleff, S.A.3
Williams, W.K.4
Patel, D.5
Mahfouz, R.6
Behm, F.G.7
Raimondi, S.C.8
Relling, M.V.9
Patel, A.10
-
15
-
-
0034948571
-
International consensus statement on idiopathic pulmonary fibrosis
-
Costabel U, King TE. International consensus statement on idiopathic pulmonary fibrosis. Eur Respir J 2001;17:163-167.
-
(2001)
Eur Respir J
, vol.17
, pp. 163-167
-
-
Costabel, U.1
King, T.E.2
-
16
-
-
25644460419
-
Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis
-
Pardo A, Gibson K, Cisneros J, Richards TJ, Yang Y, Becerril C, Yousem S, Herrera I, Ruiz V, Selman M, et al. Up-regulation and profibrotic role of osteopontin in human idiopathic pulmonary fibrosis. PLoS Med 2005;2:e251.
-
(2005)
PLoS Med
, vol.2
-
-
Pardo, A.1
Gibson, K.2
Cisneros, J.3
Richards, T.J.4
Yang, Y.5
Becerril, C.6
Yousem, S.7
Herrera, I.8
Ruiz, V.9
Selman, M.10
-
17
-
-
18344396051
-
Gene expression analysis reveals matrilysin as a key regulator of pulmonary fibrosis in mice and humans
-
Zuo F, Kaminski N, Eugui E, Allard J, Yakhini Z, Ben-Dor A, Lollini L, Morris D, Kim Y, DeLustro B, et al. Gene expression analysis reveals matrilysin as a key regulator of pulmonary fibrosis in mice and humans. Proc Natl Acad Sci USA 2002;99:6292-6297.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6292-6297
-
-
Zuo, F.1
Kaminski, N.2
Eugui, E.3
Allard, J.4
Yakhini, Z.5
Ben-Dor, A.6
Lollini, L.7
Morris, D.8
Kim, Y.9
DeLustro, B.10
-
18
-
-
20044388557
-
From signatures to models: Understanding cancer using microarrays
-
Segal E, Friedman N, Kaminski N, Regev A, Koller D. From signatures to models: understanding cancer using microarrays. Nat Genet 2005;37:S38-S45.
-
(2005)
Nat Genet
, vol.37
-
-
Segal, E.1
Friedman, N.2
Kaminski, N.3
Regev, A.4
Koller, D.5
-
19
-
-
24944463801
-
Analysis of microarray experiments for pulmonary fibrosis
-
Dave NB, Kaminski N. Analysis of microarray experiments for pulmonary fibrosis. Methods Mol Med 2005;117:333-358.
-
(2005)
Methods Mol Med
, vol.117
, pp. 333-358
-
-
Dave, N.B.1
Kaminski, N.2
-
20
-
-
0036899286
-
From patterns to pathways: Gene expression data analysis comes of age
-
Slonim DK. From patterns to pathways: gene expression data analysis comes of age. Nat Genet 2002;32:502-508.
-
(2002)
Nat Genet
, vol.32
, pp. 502-508
-
-
Slonim, D.K.1
-
21
-
-
0036126374
-
Overexpression of matrix metalloproteinase-7 in pulmonary fibrosis
-
Cosgrove GP, Schwarz MI, Geraci MW, Brown KK, Worthen GS. Overexpression of matrix metalloproteinase-7 in pulmonary fibrosis. Chest 2002;121:25S-26S.
-
(2002)
Chest
, vol.121
-
-
Cosgrove, G.P.1
Schwarz, M.I.2
Geraci, M.W.3
Brown, K.K.4
Worthen, G.S.5
-
22
-
-
0041827284
-
Microarray analysis of idiopathic pulmonary fibrosis
-
Kaminski N. Microarray analysis of idiopathic pulmonary fibrosis. Am J Respir Cell Mol Biol 2003;29:S32-S36.
-
(2003)
Am J Respir Cell Mol Biol
, vol.29
-
-
Kaminski, N.1
-
23
-
-
0344319833
-
Identifying biological themes within lists of genes with EASE
-
Hosack DA, Dennis G Jr, Sherman BT, Lane HC, Lempicki RA. Identifying biological themes within lists of genes with EASE. Genome Biol 2003;4:R70.
-
(2003)
Genome Biol
, vol.4
-
-
Hosack, D.A.1
Dennis Jr., G.2
Sherman, B.T.3
Lane, H.C.4
Lempicki, R.A.5
-
24
-
-
31944436620
-
Gene expression profiles distinguish idiopathic pulmonary fibrosis from hypersensitivity pneumonitis
-
Selman M, Pardo A, Barrera L, Estrada A, Watson SR, Wilson K, Aziz N, Kaminski N, Zlotnik A. Gene expression profiles distinguish idiopathic pulmonary fibrosis from hypersensitivity pneumonitis. Am J Respir Crit Care Med 2006;173:188-198.
-
(2006)
Am J Respir Crit Care Med
, vol.173
, pp. 188-198
-
-
Selman, M.1
Pardo, A.2
Barrera, L.3
Estrada, A.4
Watson, S.R.5
Wilson, K.6
Aziz, N.7
Kaminski, N.8
Zlotnik, A.9
-
25
-
-
0041452111
-
Angiogenesis in pulmonary fibrosis
-
Cosgrove GP, Brown KK, Cool CD, Geraci MW, Schwartz MI, Worthen GS. Angiogenesis in pulmonary fibrosis. Am J Respir Crit Care Med 2002;165:A172.
-
(2002)
Am J Respir Crit Care Med
, vol.165
-
-
Cosgrove, G.P.1
Brown, K.K.2
Cool, C.D.3
Geraci, M.W.4
Schwartz, M.I.5
Worthen, G.S.6
-
26
-
-
2442662928
-
Altered bleomycin-induced lung fibrosis in osteopontin-deficient mice
-
Berman JS, Serlin D, Li X, Whitley G, Hayes J, Rishikof DC, Ricupero DA, Liaw L, Goetschkes M, O'Regan AW. Altered bleomycin-induced lung fibrosis in osteopontin-deficient mice. Am J Physiol Lung Cell Mol Physiol 2004;286:L1311-L1318.
-
(2004)
Am J Physiol Lung Cell Mol Physiol
, vol.286
-
-
Berman, J.S.1
Serlin, D.2
Li, X.3
Whitley, G.4
Hayes, J.5
Rishikof, D.C.6
Ricupero, D.A.7
Liaw, L.8
Goetschkes, M.9
O'Regan, A.W.10
-
27
-
-
0035097644
-
Role of osteopontin in the pathogenesis of bleomycin-induced pulmonary fibrosis
-
Takahashi F, Takahashi K, Okazaki T, Maeda K, Ienaga H, Maeda M, Kon S, Uede T, Fukuchi Y. Role of osteopontin in the pathogenesis of bleomycin-induced pulmonary fibrosis. Am J Respir Cell Mol Biol 2001;24:264-271.
-
(2001)
Am J Respir Cell Mol Biol
, vol.24
, pp. 264-271
-
-
Takahashi, F.1
Takahashi, K.2
Okazaki, T.3
Maeda, K.4
Ienaga, H.5
Maeda, M.6
Kon, S.7
Uede, T.8
Fukuchi, Y.9
-
28
-
-
4444302764
-
Enhanced monocyte chemoattractant protein-3/CC chemokine ligand-7 in usual interstitial pneumonia
-
Choi ES, Jakubzick C, Carpenter KJ, Kunkel SL, Evanoff H, Martinez FJ, Flaherty KR, Toews GB, Colby TV, Kazerooni EA, et al. Enhanced monocyte chemoattractant protein-3/CC chemokine ligand-7 in usual interstitial pneumonia. Am J Respir Crit Care Med 2004;170:508-515.
-
(2004)
Am J Respir Crit Care Med
, vol.170
, pp. 508-515
-
-
Choi, E.S.1
Jakubzick, C.2
Carpenter, K.J.3
Kunkel, S.L.4
Evanoff, H.5
Martinez, F.J.6
Flaherty, K.R.7
Toews, G.B.8
Colby, T.V.9
Kazerooni, E.A.10
-
29
-
-
25444491206
-
Gene expression profiling reveals novel TGFbeta targets in adult lung fibroblasts
-
Renzoni EA, Abraham DJ, Howat S, Shi-Wen X, Sestini P, Bou-Gharios G, Wells AU, Veeraraghavan S, Nicholson AG, Denton CP, et al. Gene expression profiling reveals novel TGFbeta targets in adult lung fibroblasts. Respir Res 2004;5:24.
-
(2004)
Respir Res
, vol.5
, pp. 24
-
-
Renzoni, E.A.1
Abraham, D.J.2
Howat, S.3
Shi-Wen, X.4
Sestini, P.5
Bou-Gharios, G.6
Wells, A.U.7
Veeraraghavan, S.8
Nicholson, A.G.9
Denton, C.P.10
-
30
-
-
1542411333
-
Idiopathic pulmonary fibrosis: Pathogenesis and therapeutic approaches
-
Selman M, Thannickal VJ, Pardo A, Zisman DA, Martinez FJ, Lynch JP III. Idiopathic pulmonary fibrosis: pathogenesis and therapeutic approaches. Drugs 2004;64:405-430.
-
(2004)
Drugs
, vol.64
, pp. 405-430
-
-
Selman, M.1
Thannickal, V.J.2
Pardo, A.3
Zisman, D.A.4
Martinez, F.J.5
Lynch III, J.P.6
-
31
-
-
0033524949
-
The integrin alpha v beta 6 binds and activates latent TGF beta 1: A mechanism for regulating pulmonary inflammation and fibrosis
-
Munger JS, Huang X, Kawakatsu H, Griffiths MJ, Dalton SL, Wu J, Pittet JF, Kaminski N, Garat C, Matthay MA, et al. The integrin alpha v beta 6 binds and activates latent TGF beta 1: a mechanism for regulating pulmonary inflammation and fibrosis. Cell 1999;96:319-328.
-
(1999)
Cell
, vol.96
, pp. 319-328
-
-
Munger, J.S.1
Huang, X.2
Kawakatsu, H.3
Griffiths, M.J.4
Dalton, S.L.5
Wu, J.6
Pittet, J.F.7
Kaminski, N.8
Garat, C.9
Matthay, M.A.10
-
32
-
-
0034652216
-
Global analysis of gene expression in pulmonary fibrosis reveals distinct programs regulating lung inflammation and fibrosis
-
Kaminski N, Allard JD, Pittet JF, Zuo F, Griffiths MJ, Morris D, Huang X, Sheppard D, Heller RA. Global analysis of gene expression in pulmonary fibrosis reveals distinct programs regulating lung inflammation and fibrosis. Proc Natl Acad Sci USA 2000;97:1778-1783.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 1778-1783
-
-
Kaminski, N.1
Allard, J.D.2
Pittet, J.F.3
Zuo, F.4
Griffiths, M.J.5
Morris, D.6
Huang, X.7
Sheppard, D.8
Heller, R.A.9
-
33
-
-
1642357498
-
FIZZ1 stimulation of myofibroblast differentiation
-
Liu T, Dhanasekaran SM, Jin H, Hu B, Tomlins SA, Chinnaiyan AM, Phan SH. FIZZ1 stimulation of myofibroblast differentiation. Am J Pathol 2004;164:1315-1326.
-
(2004)
Am J Pathol
, vol.164
, pp. 1315-1326
-
-
Liu, T.1
Dhanasekaran, S.M.2
Jin, H.3
Hu, B.4
Tomlins, S.A.5
Chinnaiyan, A.M.6
Phan, S.H.7
-
34
-
-
19944406853
-
High plasma concentrations of osteopontin in patients with interstitial pneumonia
-
Kadota J, Mizunoe S, Mito K, Mukae H, Yoshioka S, Kawakami K, Koguchi Y, Fukushima K, Kon S, Kohno S, et al. High plasma concentrations of osteopontin in patients with interstitial pneumonia. Respir Med 2005;99:111-117.
-
(2005)
Respir Med
, vol.99
, pp. 111-117
-
-
Kadota, J.1
Mizunoe, S.2
Mito, K.3
Mukae, H.4
Yoshioka, S.5
Kawakami, K.6
Koguchi, Y.7
Fukushima, K.8
Kon, S.9
Kohno, S.10
|