Denaturing HPLC for high-throughput screening of rifampicin-resistant Mycobacterium tuberculosis isolates

International Journal of Tuberculosis and Lung Disease

Volumn 10, Issue 6, 2006, Pages 625-630

  Yip, C W ^a   Leung, K L ^a   Wong, D ^a   Cheung, D T L ^a   Chu, M Y ^a   Tang, H S ^a   Kam, Kai Man ^a  

^a DEPARTMENT OF HEALTH   (Hong Kong)

Author keywords

Denaturing high performance liquid chromatography; Drug resistance; Rifampicin; rpoB mutation; Tuberculosis

Indexed keywords

RIFAMPICIN;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM ISOLATE; CONTROLLED STUDY; DENATURATION; GENE MUTATION; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PILOT STUDY; PRIORITY JOURNAL; RPOB GENE;

BACTERIAL PROTEINS; CHROMATOGRAPHY, HIGH PRESSURE LIQUID; DRUG RESISTANCE, BACTERIAL; HUMANS; MUTATION; MYCOBACTERIUM TUBERCULOSIS; RIFAMPIN; TIME FACTORS; TUBERCULOSIS, PULMONARY;

EID: 33744929381     PISSN: 10273719     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (27)

1. World Health Organization. Global tuberculosis control. Geneva, Switzerland: WHO, 2001.
2. Espinal M A, Laszlo A, Simonsen L, et al. Global trends in resistance to antituberculosis drugs. World Health Organization-International Union Against Tuberculosis and Lung Disease Working Group on Anti-Tuberculosis Drug Resistance Surveillance. N Engl J Med 2001; 344: 1294-1303.
3. Mahmoudi A, Iseman M D. Pitfalls in the care of patients with tuberculosis. Common errors and their association with the acquisition of drug resistance. JAMA 1993; 270: 65-68.
4. Geerligs W A, van Altena R, van der Werf T S. Antituberculosis drug resistance. N Engl J Med 1998; 339: 1079-1080.
5. Drobniewski F A, Wilson S M. The rapid diagnosis of isoniazid and rifampicin resistance in Mycobacterium tuberculosis: a molecular story. J Med Microbiol 1998; 47: 189-196.
6. Ohno H, Koga H, Kuroita T, et al. Rapid prediction of rifampin susceptibility of Mycobacterium tuberculosis. Am J Respir Crit Care Med 1997; 155: 2057-2063.
7. Ramaswamy S, Musser J M. Molecular genetic basis of anti-microbial agent resistance in Mycobacterium tuberculosis: 1998 update. Tubercle Lung Dis 1998; 79: 3-29.
8. Kapur V, Li L L, Iordanescu S, et al. Characterization by automated DNA sequencing of mutations in the gene (rpoB) encoding the RNA polymerase β subunit in rifampin-resistant Mycobacterium tuberculosis strains from New York City and Texas. J Clin Microbiol 1994; 32: 1095-1098.
9. Yam W C, Tam C M, Leung C C, et al. Direct detection of rifampin-resistant Mycobacterium tuberculosis in respiratory specimens by PCR-DNA sequencing. J Clin Microbiol 2004; 42: 4438-4443.
10. Telenti A, Imboden P, Marchesi F, Schmidheini T, Bodmer T. Direct, automated detection of rifampin-resistant Mycobacterium tuberculosis by PCR and single-strand conformation polymorphism analysis. Antimicrob Agents Chemother 1993; 37: 2054-2058.
11. Scarpellini P, Braglia S, Brambilla A M, et al. Detection of rifampin resistance by single-strand conformation polymorphism analysis of cerebrospinal fluid of patients with tuberculosis of the central nervous system. J Clin Microbiol 1997; 35: 2802-2806.
12. Wada T, Maeda S, Tamaru A, Imai S, Hase A, Kobayashi K. Dual probe assay for rapid detection of drug-resistant Mycobacterium tuberculosis by real-time PCR. J Clin Microbiol 2004; 42: 5277-5285.
13. Srivastava K, Das R, Jakhmola P, et al. Correlation of mutations detected by INNO-LiPA with levels of rifampicin resistance in Mycobacterium tuberculosis. Ind J Med Res 2003; 120: 100-105.
14. Oefner P J, Underbill P A. DNA mutation detection using denaturing high-performance liquid chromatography (DHPLC). Curr Protocols Hum Genet 1998; 19 (Suppl): 7.10.1-7.10.12.
15. Cooksey R C, Morlock G P, Holloway B P, Limor J, Hepburn M. Temperature-mediated heteroduplex analysis performed by using denaturing high- performance liquid chromatography to identify sequence polymorphism in Mycobacterium tuberculosis complex organisms. J Clin Microbiol 2002; 40: 1610-1616.
16. Mohamed A M, Bastola D R, Morlock G P, Cooksey R C, Hinrichs S H. Temperature-mediated heteroduplex analysis for detection of pncA mutations associated with pyrazinamide resistance and differentiation between Mycobacterium tuberculosis and Mycobacterium bovis by denaturing high-performance liquid chromatography. J Clin Microbiol 2004; 42: 1016-1023.
17. Kam K M, Yip C W. Surveillance of Mycobacterium tuberculosis drug resistance in Hong Kong, 1986-1999, after the implementation of directly observed treatment. Int J Tuberc Lung Dis 2001; 5: 815-823.
18. Wong D A, Yip C W, Cheung T L, Kam K M. Simple and rational approach to the identification of Mycobacterium tuberculosis, Mycobacterium avium complex species, and other commonly isolated mycobacteria. J Clin Microbiol 2001; 39: 3768-3771.
19. Telenti A, Imboden P, Marchesi F, et al. Detection of rifampicin-resistance mutations in Mycobacterium tuberculosis. Lancet 1993; 341: 647-650.
20. World Health Organization. Tuberculosis Control in the WHO Western Pacific Region: 2004 Report. Manila, Philippines: Regional WHO Office for the Western Pacific, 2004.
21. Cole S T. Rifampicin resistance in mycobacteria. Res Microbiol 1996; 147: 48-52.
22. Zhang Y, Telenti A. Genetics of drug resistance in Mycobacterium tuberculosis. In: Hatfull G F, Jacobs W R, eds. Molecular genetics of mycobacteria. Washington DC, USA: ASM Press, 2000: pp 235-254.
23. Department of Health. Annual Report 2001. Government of Hong Kong, SAR: Tuberculosis and Chest Service of the Department of Health, 2001.
24. Narayanaswami G, Taylor P D. Improved efficiency of mutation detection by denaturing high-performance liquid chromatography using modified primers and hybridization procedure. Genet Test 2001; 5: 9-16.
25. Schollen E, Dequeker E, McQuaid S, et al. Diagnostic DHPLC Quality Assurance (DDQA): a collaborative approach to the generation of validated and standardized methods for DHPLC-based mutation screening in clinical genetics laboratories. Hum Mutat 2005; 25: 583-592.
26. Evans J T, Hawkey P M, Smith E G, Boese K A, Warren R E, Hong G. Automated high-throughput mycobacterial interspersed repetitive unit typing of Mycobacterium tuberculosis strains by a combination of PCR and nondenaturing high-performance liquid chromatography. J Clin Microbiol 2004; 42: 4175-4180.
27. World Health Organization. Anti-tuberculosis drug resistance survey in the world. Third global report. Geneva, Switzerland: WHO, 2004.