Direct detection of rifampin-resistant Mycobacterium tuberculosis in respiratory specimens by PCR-DNA sequencing

Journal of Clinical Microbiology

Volumn 42, Issue 10, 2004, Pages 4438-4443

  Yam, W C ^a   Tam, C M ^b   Leung, C C ^b   Tong, H L ^a   Chan, K H ^a   Leung, E T Y ^a   Wong, K C ^a   Yew, W W ^c   Seto, W H ^a   Yuen, K Y ^a   Ho, P L ^a,d  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

^b DEPARTMENT OF HEALTH   (Hong Kong)

^c GRANTHAM HOSPITAL   (Hong Kong)

^d QUEEN MARY HOSPITAL   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

RIFAMPICIN; RNA POLYMERASE BETA SUBUNIT;

ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIUM CULTURE; BACTERIUM DETECTION; CHINA; CONTROLLED STUDY; DELETION MUTANT; DIAGNOSTIC TEST; DNA SEQUENCE; GENETIC RESISTANCE; GENOTYPE; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POINT MUTATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ANTIBIOTICS, ANTITUBERCULAR; DNA TRANSPOSABLE ELEMENTS; DNA-DIRECTED RNA POLYMERASES; DRUG RESISTANCE, BACTERIAL; HUMANS; MICROBIAL SENSITIVITY TESTS; MYCOBACTERIUM TUBERCULOSIS; POLYMERASE CHAIN REACTION; RIFAMPIN; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS, DNA; SPUTUM; TUBERCULOSIS;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS; UNCULTURED ACTINOMYCETE;

EID: 5444273459     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.42.10.4438-4443.2004     Document Type: Article

References (37)

1. Barlett, J. G., K. J. Ryan, T. F. Smith, and W. R. Wilson. 1987. Cumitech 7A: laboratory diagnosis of lower respiratory tract infections. American Society for Microbiology, Washington, D.C.
2. Bogard, M., J. Vincelette, R. Antinozzi, R. Alonso, T. Fenner, J. Schirm, D. Aubert, C. Gaudreau, E. Sala, M. J. Ruiz-Serrano, H. Petersen, L. A. Oostendorp, and H. Burkardt. 2001. Multicenter study of a commercial, automated polymerase chain reaction system for the rapid detection of Mycobacterium tuberculosis in respiratory specimens in routine clinical practice. Eur. J. Clin. Microbiol. Infect. Dis. 20:724-731.
3. Chan, C. M., K. Y. Yuen, K. S. Chan, W. C. Yam, K. H. Yim, W. F. Ng, and M. H. Ng. 1996. Single-tube nested PCR in the diagnosis of tuberculosis. J. Clin. Pathol. 49:290-294.
4. Chavez Pachas, A. M., R. Blank, M. C. Smith Fawxi, J. Bayona, M. C. Becerra, and C. D. Mitnick. 2004. Identifying early treatment failure on category I therapy for pulmonary tuberculosis in Lima Ciudad, Peru. Int. J. Tuberc. Lung Dis. 8:52-58.
5. Cheng, V. C., W. C. Yam, I. F. Hung, P. C. Woo, S. K. Lau, B. S. Tang, and K. Y. Yuen. 2004. Clinical evaluation of the polymerase chain reaction for the rapid diagnosis of tuberculosis. J. Clin. Pathol. 57:281-285.
6. Drobniewski, F. A., S. A. Watterson, S. M. Wilson, and G. S. Harris. 2000. A clinical, microbiological and economic analysis of a national service for the rapid molecular diagnosis of tuberculosis and rifampicin resistance in Mycobacterium tuberculosis. J. Med. Microbiol. 49:271-278.
7. Drobniewski, F. A., and S. M. Wilson. 1998. The rapid diagnosis of isoniazid and rifampicin resistance in Mycobacterium tuberculosis: a molecular story. J. Med. Microbiol. 47:189-196.
8. Espinal, M. A., K. Laserson, M. Camacho, Z. Fusheng, S. J. Kim, R. E. Tlali, I. Smith, P. Suarez, M. L. Antunes, A. G. George, N. Martin-Casabona, P. Simelane, K. Weyer, N. Binkin, and M. C. Raviglione. 2001. Determinants of drug-resistant tuberculosis: analysis of 11 countries. Int. J. Tuberc. Lung Dis. 5:887-893.
9. Espinal, M. A., A. Laszlo, L. Simonsen, F. Boulahbal, S. J. Kim, A. Reniero, S. Hoffner, H. L. Rieder, N. Binkin, C. Dye, R. Williams, M. C. Raviglione, et al. 2001. Global trends in resistance to antituberculosis drugs. N. Engl. J. Med. 344:1294-1303.
10. Fan, X. Y., Z. Y. Hu, F. H. Xu, Z. Q. Yan, S. Q. Guo, and Z. M. Li. 2003. Rapid detection of rpoB gene mutations in rifampin-resistant Mycobacterium tuberculosis isolates in Shanghai by using the amplification refractory mutation system. J. Clin. Microbiol. 41:993-997.
11. Heep, M., B. Brandstatter, U. Rieger, N. Lehn, E. Richter, S. Rusch-Gerdes, and S. Niemann. 2001. Frequency of rpoB mutations inside and outside the cluster I region in rifampin-resistant clinical Mycobacterium tuberculosis isolates. J. Clin. Microbiol. 39:107-110.
12. Hirano, K., C. Abe, and M. Takahashi. 1999. Mutations in the rpoB gene of rifampin-resistant Mycobacterium tuberculosis strains isolated mostly in Asian countries and their rapid detection by line probe assay. J. Clin. Microbiol. 37:2663-2666.
13. Kam, K. M., C. W. Yip, L. W. Tse, O. C. Leung, L. P. Sin, M. Y. Chan, and W. S. Wong. 2002. Trends in multidrug-resistant Mycobacterium tuberculosis in relation to sputum smear positivity in Hong Kong, 1989-1999. Clin. Infect. Dis. 34:324-329.
14. Kimerling, M. E., A. Slavuckij, S. Chavers, G. G. Peremtin, T. Tonkel, O. Sirotkina, V. Golubchikova, and A. Baddeley. 2003. The risk of MDR-TB and polyresistant tuberculosis among the civilian population of Tomsk City, Siberia, 1999. Int. J. Tuberc. Lung Dis. 7:866-872.
15. Kritski, A. L., L. S. Rodrigues de Jesus, M. K. Andrade, E. Werneck-Barroso, M. A. Vieira, A. Haffner, and L. W. Riley. 1997. Retreatment tuberculosis cases. Factors associated with drug resistance and adverse outcomes. Chest 111:1162-1167.
16. Leung, E. T., K. M. Kam, A. Chiu, P. L. Ho, W. H. Seto, K. Y. Yuen, and W. C. Yam. 2003. Detection of katG Ser315Thr substitution in respiratory specimens from patients with isoniazid-resistant Mycobacterium tuberculosis using PCR-RFLP. J. Med. Microbiol. 52:999-1003.
17. Levidiotou, S., G. Vrioni, E. Galanakis, E. Gesouli, C. Pappa, and D. Stefanou. 2003. Four-year experience of use of the Cobas Amplicor system for rapid detection of Mycobacterium tuberculosis complex in respiratory and nonrespiratory specimens in Greece. Eur. J. Clin. Microbiol. Infect. Dis. 22:349-356.
18. Liu, Z., K. L. Shilkret, and L. Finelli. 1998. Epidemiology of drug-resistant tuberculosis in New Jersey from 1991 to 1995. Int. J. Epidemiol. 27:121-126.
19. Mokrousov, I., T. Otten, B. Vyshnevskiy, and O. Narvskaya. 2003. Allele-specific rpoB PCR assays for detection of rifampin-resistant Mycobacterium tuberculosis in sputum smears. Antimicrob. Agents Chemother. 47:2231-2235.
20. National Committee for Clinical Laboratory Standards. 2000. Susceptibility testing of Mycobacteria, Nocardia and other Aerobic Actinomycetes. Tentative standard MT24-T2. National Committee for Clinical Laboratory Standards, Wayne, Pa.
21. Nolte, F. S., and B. Metchock. 1995. Mycobacterium, p. 400-437. In P. R. Murray, E. J. Baron, M. A. Pfaller, F. C. Tenover, and R. H. Yolken (ed.), Manual of clinical microbiology. American Society for Microbiology, Washington, D.C.
22. Pozzi, G., M. Meloni, E. Iona, G. Orru, O. F. Thoresen, M. L. Ricci, M. R. Oggioni, L. Fattorini, and G. Orefici. 1999. rpoB mutations in multidrug-resistant strains of Mycobacterium tuberculosis isolated in Italy. J. Clin. Microbiol. 37:1197-1199.
23. Qian, L., C. Abe, T. P. Lin, M. C. Yu, S. N. Cho, S. Wang, and J. T. Douglas. 2002. rpoB genotypes of Mycobacterium tuberculosis Beijing family isolates from East Asian countries. J. Clin. Microbiol. 40:1091-1094.
24. Ramaswamy, S., and J. M. Musser. 1998. Molecular genetic basis of antimicrobial agent resistance in Mycobacterium tuberculosis: 1998 update. Tuberc. Lung Dis. 79:3-29.
25. Ruiz, M., M. J. Torres, A. C. Llanos, A. Arroyo, J. C. Palomares, and J. Aznar. 2004. Direct detection of rifampin- and isoniazid-resistant Mycobacterium tuberculosis in auramine-rhodamine-positive sputum specimens by real-time PCR. J. Clin. Microbiol. 42:1585-1589.
26. Schilke, K., K. Weyer, G. Bretzel, B. Amthor, J. Brandt, V. Sticht-Groh, P. B. Fourie, and W. H. Haas. 1999. Universal pattern of rpoB gene mutations among multidrug-resistant isolates of Mycobacterium tuberculosis complex from Africa. Int. J. Tuberc. Lung Dis. 3:620-626.
27. Sintchenko, V., W. K. Chew, P. J. Jelfs, and G. L. Gilbert. 1999. Mutations in rpoB gene and rifabutin susceptibility of multidrug-resistant Mycobacterium tuberculosis strains isolated in Australia. Pathology 31:257-260.
28. Telenti, A., N. Honore, C. Bernasconi, J. March, A. Ortega, B. Heym, H. E. Takiff, and S. T. Cole. 1997. Genotypic assessment of isoniazid and rifampin resistance in Mycobacterium tuberculosis: a blind study at reference laboratory level. J. Clin. Microbiol. 35:719-723.
29. Telenti, A., P. Imboden, F. Marchesi, D. Lowrie, S. Cole, M. J. Colston, L. Matter, K. Schopfer, and T. Bodmer. 1993. Detection of rifampicin-resistance mutations in Mycobacterium tuberculosis. Lancet 341:647-650.
30. Valim, A. R., M. L. Rossetti, M. O. Ribeiro, and A. Zaha. 2000. Mutations in the rpoB gene of multidrug-resistant Mycobacterium tuberculosis isolates from Brazil. J. Clin. Microbiol. 38:3119-3122.
31. Williams, D. L., L. Spring, T. P. Gillis, M. Salfinger, and D. H. Persing. 1998. Evaluation of a polymerase chain reaction-based universal heteroduplex generator assay for direct detection of rifampin susceptibility of Mycobacterium tuberculosis from sputum specimens. Clin. Infect. Dis. 26:446-450.
32. Yam, W. C., V. C. Cheng, W. T. Hui, L. N. Wang, W. H. Seto, and K. Y. Yuen. 2004. Direct detection of Mycobacterium tuberculosis in clinical specimens using single-tube biotinylated nested polymerase chain reaction-enzyme linked immunoassay (PCR-ELISA). Diagn. Microbiol. Infect. Dis. 48:271-275.
33. Yam, W. C., K. Y. Yuen, and W. H. Seto. 1998. Direct detection of Mycobacterium tuberculosis in respiratory specimens using an automated DNA amplification assay and a single tube nested polymerase chain reaction (PCR). Clin. Chem. Lab. Med. 36:597-599.
34. Yang, B., H. Koga, H. Ohno, K. Ogawa, M. Fukuda, Y. Hirakata, S. Maesaki, K. Tomono, T. Tashiro, and S. Kohno. 1998. Relationship between antimycobacterial activities of rifampicin, rifabutin, and KRM-1648 and rpoB mutations of Mycobacterium tuberculosis. J. Antimicrob. Chemother. 42:621-628.
35. Yue, J., W. Shi, J. Xie, Y. Li, E. Zeng, and H. Wang. 2003. Mutations in the rpoB gene of multidrug-resistant Mycobacterium tuberculosis isolates from China. J. Clin. Microbiol. 41:2209-2212.
36. Yuen, K. Y., W. C. Yam, L. P. Wong, and W. H. Seto. 1997. Comparison of two automated DNA amplification systems with a manual one-tube nested PCR assay for diagnosis of pulmonary tuberculosis. J. Clin. Microbiol. 35:1385-1389.
37. Yuen, L. K., D. Leslie, and P. J. Coloe. 1999. Bacteriological and molecular analysis of rifampin-resistant Mycobacterium tuberculosis strains isolated in Australia. J. Clin. Microbiol. 37:3844-3850.