Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development

Gene Expression Patterns

Volumn 6, Issue 5, 2006, Pages 556-565

  Tallafuss, Alexandra ^a   Hale, Laura A ^a   Yan, Yi Lin ^a   Dudley, Leana ^a   Eisen, Judith S ^a   Postlethwait, John H ^a  

^a UNIVERSITY OF OREGON   (United States)

Author keywords

Gene expression; Phylogenetic analysis; Retinoic acid; Retinoid X receptor; Retinoid X receptor alpha; Retinoid X receptor beta; Retinoid X receptor gamma; Rxr; RXRA; rxra; RXRB; rxrba; rxrbb; rxrg; RXRG; Zebrafish

Indexed keywords

RETINOIC ACID; RETINOID X RECEPTOR; RETINOID X RECEPTOR ALPHA; RETINOID X RECEPTOR BETA; RETINOID X RECEPTOR GAMMA;

ARTICLE; CONTROLLED STUDY; DIMERIZATION; EMBRYO; EMBRYO DEVELOPMENT; GENE EXPRESSION PROFILING; GENE FUNCTION; GENE SEQUENCE; GENETIC ASSOCIATION; GENETIC CODE; GENETIC CONSERVATION; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PHYLOGENY; PRIORITY JOURNAL; RECEPTOR BINDING; SEQUENCE ANALYSIS; SYNTENY; ZEBRA FISH;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA PRIMERS; FEMALE; GENE EXPRESSION PROFILING; IN SITU HYBRIDIZATION; PHYLOGENY; RETINOID X RECEPTORS; ZEBRAFISH;

DANIO RERIO; TETRAPODA; VERTEBRATA;

EID: 33744913531     PISSN: 1567133X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.modgep.2005.10.005     Document Type: Article

References (43)

1. Amores A., Force A., Yan Y.-L., Joly L., Amemiya C., Fritz A., et al. Zebrafish hox clusters and vertebrate genome evolution. Science 282 (1998) 1711-1714
2. Bastien J., and Rochette-Egly C. Nuclear retinoid receptors and the transcription of retinoid-target genes. Gene 328 (2004) 1-16
3. Crowe D.L., and Chandraratna R.A.S. A retinoid X receptor (RXR)-selective retinoid reveals that RXR-α is potentially a therapeutic target in breast cancer cell lines, and that it potentiates antiproliferative and apoptotic responses to peroxisome proliferator-activated receptor ligands. Breast Cancer Res. 6 (2004) R546-R555
4. Dolle P., Fraulob V., Kastner P., and Chambon P. Developmental expression of murine retinoid X receptor (RXR) genes. Mech. Dev. 45 (1994) 91-104
5. Gavalas A., and Krumlauf R. Retinoid signalling and hindbrain patterning. Curr. Opin. Genet. Dev. 10 (2000) 380-386
6. Georgiades P., and Brickell P.M. Differential expression of the rat retinoid X receptor gamma gene during skeletal muscle differentiation suggests a role in myogenesis. Dev. Dyn. 210 (1997) 227-235
7. Ghose R., Zimmerman T.L., Thevananther S., and Karpen S.J. Endotoxin leads to rapid subcellular re-localization of hepatic RXRalpha: a novel mechanism for reduced hepatic gene expression in inflammation. Nucl. Recept. 2 (2004) 4
8. Grandel H., Lun K., Rauch G.J., Rhinn M., Piotrowski T., Houart C., et al. Retinoic acid signalling in the zebrafish embryo is necessary during pre-segmentation stages to pattern the anterior-posterior axis of the CNS and to induce a pectoral fin bud. Development 129 (2002) 2851-2865
9. Hauptmann G., and Gerster T. Two-colour whole-mount in situ hybridization to vertebrate and Drosophila embryos. Trends Genet. 10 (1994) 266
10. Holland P.W.H., Garcia-Fernàndez J., Williams N.A., and Sidow A. Gene duplications and the origins of vertebrate development. Development Suppl. (1994) 125-133
11. Hoover F., Seleiro E.A., Kielland A., Brickell P.M., and Glover J.C. Retinoid X receptor gamma gene transcripts are expressed by a subset of early generated retinal cells and eventually restricted to photoreceptors. J. Comp. Neurol. 391 (1998) 204-213
12. Hoover F., Kielland A., and Glover J.C. RXR gamma gene is expressed by discrete cell columns within the alar plate of the brainstem of the chicken embryo. J. Comp. Neurol. 416 (2000) 417-428
13. Jiang X., Choudhary B., Merki E., Chien K.R., Maxson R.E., and Sucov H.M. Normal fate and altered function of the cardiac neural crest cell lineage in retinoic acid receptor mutant embryos. Mech. Dev. 117 (2002) 115-122
14. Jones B.B., Ohno C.K., Allenby G., Boffa M.B., Levin A.A., Grippo J.P., and Petkovich M. New retinoid X receptor subtypes in zebra fish (Danio rerio) differentially modulate transcription and do not bind 9-cis retinoic acid. Mol. Cell. Biol. 15 (1995) 5226-5234
15. Kastner P., Mark M., Ghyselinck N., Krezel W., Dupe V., Grondona J.M., and Chambon P. Genetic evidence that the retinoid signal is transduced by heterodimeric RXR/RAR functional units during mouse development. Development 124 (1997) 313-326
16. Kawakami Y., Raya A., Raya R.M., Rodriguez-Esteban C., and Belmonte J.C. Retinoic acid signalling links left-right asymmetric patterning and bilaterally symmetric somitogenesis in the zebrafish embryo. Nature 435 (2005) 165-171
17. Kelley M.W., Turner J.K., and Reh T.A. Ligands of steroid/thyroid receptors induce cone photoreceptors in vertebrate retina. Development 121 (1995) 3777-3785
18. Kimmel C.B., Ballard W.W., Kimmel S.R., Ullmann B., and Schilling T.F. Stages of embryonic development of Zebrafish. Dev. Dyn. 203 (1995) 253-310
19. Le Douarin N.M., and Smith J. Development of the peripheral nervous system from the neural crest. Annu. Rev. Cell. Biol. 4 (1988) 375-404
20. Lewis K.E., and Eisen J.S. Paraxial mesoderm specifies zebrafish primary motoneuron subtype identity. Development 131 (2004) 891-902
21. Li Y., Dawson M.I., Agadir A., Lee M.O., and Jong L. Regulation of RAR beta expression by RAR- and RXRselective retinoids in human lung cancer cell lines: effect on growth inhibition and apoptosis induction. Int. J. Cancer 75 (1998) 88-95
22. Mangelsdorf D.J., Ong E.S., Dyck J.A., and Evans R.M. Nuclear receptor that identifies a novel retinoic acid response pathway. Nature 345 (1990) 224-229
23. Mangelsdorf D.J., Borgmeyer U., Heyman R.A., Zhou J.Y., Ong E.S., Oro A.E., et al. Characterization of three RXR genes that mediate the action of 9-cis retinoic acid. Genes Dev. 6 (1992) 329-344
24. Naruse K., Tanaka M., Mita K., Shima A., Postlethwait J., and Mitani H. A medaka gene map: the trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping. Genome Res. 14 (2004) 820-828
25. Okuno M., Kojima S.-., Matsushima-Nishiwake R., Tsurumi H., Muto Y., Friedmann S.L., and Moriwaki H. Retinoids in cancer chemoprevention. Curr. Cancer Drug Targets 4 (2004) 285-298
26. Oxtoby E., and Jowett T. Cloning of the zebrafish krox-20 gene (krx-20) and its expression during hindbrain development. Nucleic Acid Res. 21 (1993) 1087-1095
27. Postlethwait J.H., Yan Y.-L., Gates M.A., Horne S., Amores A., Brownlie A., et al. Vertebrate genome evolution and the zebrafish gene map. Nature Genet. 18 (1998) 345-349
28. Rowe A., Eager N.S., and Brickell P.M. A member of the RXR nuclear receptor family is expressed in neural-crest-derived cells of the developing chick peripheral nervous system. Development 111 (1991) 771-778
29. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
30. Soprano D.R., Qin P., and Soprano K.J. Retinoic acid receptors and cancers. Review. Annu. Rev. Nutr. 24 (2004) 201-221
31. Sprague J., Doerry E., Douglas S., and Westerfield M. The Zebrafish information network (ZFIN): a resource for genetic, genomic and developmental research. Nucleic Acids Res. 29 (2001) 87-90
32. Stratford T., Horton C., and Maden M. Retinoic acid is required for the initiation of outgrowth in the chick limb bud. Curr. Biol. 6 (1996) 1124-1133
33. Strausberg R.L., Feingold E.A., Grouse L.H., Derge J.G., Klausner R.D., Collins F.S., et al. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc. Natl Acad. Sci. USA 99 (2002) 16899-16903
34. Taylor J.S., Braasch I., Frickey T., Meyer A., and Van de Peer Y. Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Res. 13 (2000) 382-390
35. Thisse, B., Thisse, C., 2004. Fast release clones: a high throughput expression analysis. ZFIN Direct Data Submission.
36. Umesono K., and Evans R.M. Determinants of target gene specificity for steroid/thyroid hormone receptors. Cell 57 (1989) 1139-1146
37. Westerfield M. The Zebrafish Book: a Guide for the Laboratory Use of Zebrafish (Danio rerio) (1995), University of Oregon Press, Eugene, OR
38. White J.A., Boffa M.B., Jones B.B., and Petkovich M. A zebrafish retinoic acid receptor expressed in the regenerating caudal fin. Development 120 (1994) 1861-1872
39. Willy P.J., and Mangelsdorf D.J. Nuclear orphan receptors:the search for novel ligands and signaling pathways. In: O'Malley B.W. (Ed). Hormone and Signaling (1999), Academic Press, San Diego 307-358
40. Woods I.G., Kelly P.D., Chu F., Ngo-Hazelett P., Yan Y.L., Huang H., et al. A comparative map of the zebrafish genome. Genome Res. 10 (2000) 1903-1914
41. Woods, I.G, Wilson, C., Friedlander, B., Chang, P., Daengnoy K., Reyes, D.G., et al., in press. The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Research.
42. Zetterstrom R.H., Lindqvist E., Mata de Urquiza A., Tomac A., Eriksson U., Perlmann T., and Olson L. Role of retinoids in the CNS: differential expression of retinoid binding proteins and receptors and evidence for presence of retinoic acid. Eur. J. Neurosci. 11 (1999) 407-416
43. Zhang X., Odom D.T., Koo S.-H., Conkright M.D., Canettieri G., Best J., et al. Genome-wide analysis of cAMP-response element binding protein occupancy, phosphorylation, and target gene activation in human tissues. Proc. Natl Acad. Sci. 102 (2005) 4459-4464