Restriction fragment length polymorphism and divergence in the genomic regions of high and low recombination in self-fertilizing and cross- fertilizing Aegilops species

Genetics

Volumn 148, Issue 1, 1998, Pages 423-434

  Dvořák, Jan ^a   Luo, Ming Cheng ^a   Yang, Zu Li ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; EVOLUTION; FERTILIZATION; GENE LOCUS; GENETIC RECOMBINATION; GENETIC VARIABILITY; GENOME; GRASS; HAPLOTYPE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SPECIES DIFFERENCE;

DNA, PLANT; MODELS, GENETIC; PHYLOGENY; POACEAE; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; RECOMBINATION, GENETIC; VARIATION (GENETICS);

EID: 2642610283     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (62)

1. AGUADE, M., and C. H. LANGLEY, 1994 Polymorphism and divergence in regions of low recombination in Drosophila, pp. 67-77 in Non-Neutral Evolution. Theories and Molecular Data, edited by B. GOLDING. Chapman & Hall, New York.
2. AGUADE, M., N. MIVASHITA and C. H. LANGLEY, 1989 Reduced variation in the yellow-achaete-scute region in natural populations of Drosophila melanogaster. Genetics 122: 607-615.
3. AQUADRO, C. F., D. J. BEGUN, and E. C. KINDHAL, 1994 Selection, recombination, and DNA polymorphism in Drosophila, pp. 46-55 in Non-Neutral Evolution. Theories and Molecular Data, edited by B. GOLDING. Chapman & Hall, New York.
4. BEGUN, D. J., and C. F. AQUADRO, 1991 Molecular population genetics of the distal portion of the X chromosome in Drosophila: evidence from genetic hitchhiking of the yellow-achaete region. Genetics 129: 1147-1158.
5. BEGUN, D. J., and C. F. AQUADRO, 1992 Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356: 519-520.
6. BERRY, A. J., J. W. AJIOKA and M. KREITMAN, 1991 Lack of polymorphism on the Drosophila forth chromosome resulting from selection. Genetics 129: 1111-1117.
7. BIRKY, C. W., and J. B. WALSH, 1988 Effects of linkage on rates of molecular evolution. Proc. Natl. Acad. Sci. USA 85: 6414-6418.
8. BRAVERMAN, J. M., R. R. HUDSON, N. J. KAPLAN, C. H. LANGLEY and W. STEPHAN, 1995 The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. Genetics 140: 783-796.
9. CHARLESWORTH, B., 1994 The effect of background selection against deleterious mutations on weakly selected, linked variants. Genet. Res., Camb. 63: 213-227.
10. CHARLESWORTH, B., 1996 Background selection and the patterns of genetic diversity in Drosophila melanogaster. Genet. Res., Camb. 68: 131-149.
11. CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
12. CLEGG, M. T., 1997 Plant genetic diversity and the struggle to measure selection. J. Hered. 88: 1-7.
13. CURTIS, C. A., and A. J. LUKASZEWSKI, 1991 Genetic linkage between C-bands and storage protein genes in chromosome 1B of tetraploid wheat. Theor. Appl. Genet. 81: 245-252.
14. DELANEY, D. E., S. NASUDA, T. R. ENDO, B. S. GILL and S. H. HULBERT, 1995a Cytologically based physical maps of the group 3 chromosomes of wheat. Theor. Appl. Genet. 91: 780-782.
15. DELANEY D. E., S. NASUDA, T. R. ENDO, B. S. GILL and S. H. HULBERT, 1995b Cytologically based physical maps of the group-2 chromosomes of wheat. Theor. Appl. Genet. 91: 568-573.
16. DONIS-KELLER, H., P. GREEN, C. HELMS, S. CARTINHOUR, B. WEIFFENBACH et al., 1987 A genetic linkage map of the human genome. Cell 51: 319-337.
17. DUBCOVSKY, J., and J. DVOŘÁK, 1995 Ribosomal RNA loci: nomads in theTriticeae genomes. Genetics 140: 1367-1377.
18. DUBCOVSKY, J., A. F. GALVEZ and J. DVOŘÁK, 1994 Comparison of the genetic organization of the early salt stress response gene system in salt-tolerant Lophopyrum elongatum and salt-sensitive wheat. Theor. Appl. Genet. 87: 957-964.
19. m of Triticum monococcum and its recognition by the wheat Ph1 locus. Proc. Natl. Acad. Sci. USA 92: 6645-6649.
20. DUBCOVSKY, J., M. C. LUO, G. Y. ZHONG, R. BRANSTEITTER, A. DESAI et al., 1996 Genetic map of diploid wheat, Triticum monococcum L., and its comparison with maps of Hordeum vulgare L. Genetics 143: 983-999.
21. DVOŘÁK, J., and R. APPELS, 1986 Investigation of homologous crossing over and sister chromatid exchange in the wheat Nor-2 locus coding for rRNA and Gli-B2 locus coding for gliadins. Genetics 113: 1037-1056.
22. DVOŘÁK, J., and K.-C. CHEN, 1984 Distribution of nonstructural variation between wheat cultivars cross chromosome arm 6Bp: evidence from the linkage map and physical map of the arm. Genetics 106: 325-333.
23. DVOŘÁK, J., and H. B. ZHANG, 1990 Variation in repeated nucleotide sequences sheds light on the phylogeny of the wheat B and G genomes. Proc. Natl Acad. Sci. USA 87: 9640-9644.
24. DVOŘÁK, J., and H. B. ZHANG, 1992 Reconstruction of the phylogeny of the genus Triticum from variation in repeated nucleotide sequences. Theor. Appl. Genet. 84: 419-429.
25. DVOŘÁK, J., P. E. MCGUIRE and B. CASSIDY, 1988 Apparent sources of the A genomes of wheats inferred from the polymorphism in abundance and restriction fragment length of repeated nucleotide sequences. Genome 30: 680-689.
26. DVOŘÁK, J.,J. DUBCOVSKY, M.-C. LUO, K. M. DEVOS and M. D. GALE, 1995 Differentiation between wheat chromosomes 4B and 4D. Genome 38: 1139-1147.
27. GALE, M. D., M. D. ATKINSON, C. N. CHINOY, R. L. HARCOURT, J. JIA et al., 1995 Genetic maps of hexaploid wheat, pp. 29-40 in 8th International Wheat Genetics Symposium, edited by Z. S. LI, and Z. Y. XIN. Agricultural Scientech Press, Beijing, China.
28. GILL, K. S., D. HASSAWI, W. J. RAUPP, A. K. FRITZ, B. S. GILL, et al., 1992 An updated genetic linkage map of Triticum tauschii, the D-genome progenitor of wheat, pp. 27-29 in Progress in Genome Mapping of Wheat and Related Species, Proceeding from the 2nd International Triticeae Mapping Initiative, Manhattan, KS, edited by B. S. GILL, W. J. RAUPP and H. CORKE. Genetic Conservation Program of University of California, Davis, CA.
29. GILL, K. S., E. L. LUBBERS, B. S. GILL, W. J. RAUPP and T. S. COX, 1991 A genetic linkage map of Trititum tauschii (DD) and its relationship to the D genome of bread wheat. Genome 34: 362-374.
30. GILL, K. S., B. S. GILL and T. R. ENDO, 1993 A chromosome region-specific mapping strategy reveals gene-rich telomeric ends in wheat. Chromosoma 102: 374-381.
31. GILL, K. S., B. S. GILL, T. R. ENDO and E. V. BOYKO, 1996a Identification and high-density mapping of gene-rich regions in chromosome group 5 of wheat. Genetics 143: 1001-1012.
32. GILL, K. S., B. S. GILL, T. R. ENDO and T. TAYLOR, 1996b Identification and high-density mapping of gene rich regions in chromosome group 1 of wheat. Genetics 144: 1883-1891.
33. HAMBLIN, M., and C. F. AQUADRO, 1997 Contrasting patterns of nucleotide sequence variation at the glucose dehydrogenase (Gld) locus in different populations of Drosophila melanogaster. Genetics 145: 1053-1062.
34. HAMRICK, J. L., and M. J. W. GODT, 1989 Allozyme diversity in plant species. pp. 43-63 in Plant Population Genetics, Breeding, and Genetic Resources, edited by A. H. D. BROWN, M. T. CLEGG, A. L. KAHLER, and B. S. WEIR. Sinauer Associates Inc., Sunderland, MA.
35. HOHMANN, U., T. R. ENDO, K. S. GILL, and B. S. GILL, 1994 Comparison of genetic and physical maps of group 7 chromosomes from Triticum aestivum L. Mol. Gener. Genet. 245: 644-653.
36. JAMPATES, R., and J. DVOŘÁK, 1986 Location of the Ph1 locus in the metaphase chromosome map and the linkage map of the 5Bq arm of wheat. Can. J. Genet. Cytol. 28: 511-519.
37. KAPLAN, N. L., R. R. HUDSON, and C. H. LANGLEY, 1989 The "hitch-hiking effect" revisited. Genetics 123: 887-899.
38. LAGUDAH, E. S., R. APPELS and A. D. H. BROWN, 1991 The molecular-genetic analysis of Triticum tauschii, the D genome donor to hexaploid wheat. Genome 36: 913-918.
39. LANCLEY, C. H., J. MACUONALD, N. MIYASHITA and M. AGUADE, 1993 Lack of correlation between interspecific divergence and intraspecific polymorphism at the suppressor of forked region of Drosophila melanogaster and Drosophila simulans. Proc. Natl. Acad. Sci. USA 90: 1800-1803.
40. LEWIS, P.O., and D. ZAYKIN, 1997 Genetic data analysis: computer program for the analysis of allelic data. Version 1.0. A free program distributed by the authors over the internet from the GDA Home Page at http://chee.unm.edu/gda
41. LINDSLEY, D. L., and L. SANDLER, 1977 The genetic analysis of meiosis in female Drosophila melanogaster. Philosoph. Transact. Royal Soc. London B 277: 295-312.
42. LUKASZEWSKI, A. J., and C. A. CURTIS, 1993 Physical distribution of recombination in B-genome chromosomes of tetraploid wheat. Theor. Appl. Genet. 84: 121-127.
43. MARTIN-CAMPOS, J. M., J. M. COMERON, N. MIYASHITA and M. AQUADE, 1992 Intraspecific and interspecific variation at the y-ac-sc region of Drosophila simulans and Drosophila melanogaster. Genetics 130: 805-816.
44. MAYNARD SMITH, J., and J. HAIGH, 1974 The hitchhiking effect of a favorable gene. Genet. Res. Camb. 23: 23-35.
45. MICKELSON-YOUNG, L., T. R. ENDO and B. S. GILL, 1995 A cytogenetic ladder-map of the wheat homoeologous group-4 chromosomes. Theor. Appl. Genet. 90: 1007-1011.
46. MILLER, J. C., and S. D. TANKSLEY, 1990 RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theor. Appl. Genet. 80: 437-448.
47. NEI, M., 1978 Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
48. NEI, M., 1987 Molecular Evolutionary Genetics. Columbia University Press, New York.
49. NEI, M., and A. K. ROYCHOUDHURY, 1974 Sampling variance of heterozygosity and genetic distance. Genetics 76: 379-390.
50. NELSON, J. C., M. E. SORRELLS, A. E. VAN DEYNZE, Y. H. LU, M. ATKINSON et al., 1995a Molecular mapping of wheat. Major genes and rearrangements in homoeologous groups 4, 5, and 7. Genetics 141: 721-731.
51. NELSON, J. C., A. E. VAN DEYNZE, E. AUTRIQUE, M. E. SORRELLS, Y. H. LU et al., 1995b Molecular mapping of wheat. Homoeologous group 2. Genome 38: 525-533.
52. NORDBORG, M., B. CHARLESWORTH, and D. CHARLESWORTH, 1996 The effect of recombination on background selection. Genet. Res., Camb. 67: 159-174.
53. ROBERTS, P. A., 1965 Difference in behavior of eu-and heterochromatin: crossing-over. Nature 205: 725-726.
54. SARKAR, P., and G. L. STEBBINS, 1956 Morphological evidence concerning the origin of the B genome in wheat. Amer. J. Bot. 43: 297-304.
55. SAS Institute Inc. 1989, SAS/STAT User Guide, 6.0, Ed. 4. SAS Institute, Cary, NC.
56. STEEL, R. G. D., and J. H. TORRIE, 1960 Principles and Procedures of Statistics. McGraw-Hill, New York.
57. STEPHAN, W., and S. J. MITCHEL, 1992 Reduced levels of DNA polymorphism and fixed between-population differences in the centromeric region of Drosophila ananassae. Genetics 132: 1039-1045.
58. TIMMERMANS, M. C. P., O. P. DAS and J. MESSING, 1996 Characterization of a meiotic crossover in maize identified by a restriction fragment length polymorphism-based method. Genetics 143: 1771-1783.
59. VAN DEYNZE, A. E., J. DUBCOVSKY, K. S. GILL, J. C. NELSON, M. E. SORRELLS et al., 1995 Molecular-genetic maps for group 1 chromosomes of Triticeae species and their relation to chromosomes in rice and oat. Genome 38: 45-59.
60. WAINES, G., K. HILU and H. SHARMA. 1982 Species formation in Agilops and Triticum, pp. 89-108 in Grasses and Grasslands, edited by J. R. ESTES, R. J. TYRL and J. N. BRUNKEN. University of Oklahoma Press, Norman, OK.
61. WERNER, J. E., T. R. ENDO and B. S. GILL, 1992 Towards a cytogenetically based physical map of the wheat genome. Proc. Natl. Acad. Sci. USA 89: 11307-11311.
62. WIEHE, T. H. E., and W. STEPHAN, 1993 Analysis of a genetic hitchhiking model, and its application to DNA polymorphism data from Drosophila melanogaster. Mol. Biol. Evol. 10: 842-854.