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Volumn 15, Issue 6, 2006, Pages 1557-1562

Functional annotation prediction: All for one and one for all

Author keywords

Clustering; Hierarchical classification; InterPro; Protein family

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; DATA BASE; GENE SEQUENCE; GENOME; MATHEMATICAL ANALYSIS; PRIORITY JOURNAL; SENSITIVITY ANALYSIS;

EID: 33744482316     PISSN: 09618368     EISSN: 1469896X     Source Type: Journal    
DOI: 10.1110/ps.062185706     Document Type: Article
Times cited : (30)

References (30)
  • 2
    • 0033963089 scopus 로고    scopus 로고
    • The ENZYME database in 2000
    • Bairoch, A. 2000. The ENZYME database in 2000. Nucleic Acids Res. 28: 304-305.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 304-305
    • Bairoch, A.1
  • 5
    • 2642524299 scopus 로고    scopus 로고
    • The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase
    • Camon, E., Barrell, D., Lee, V., Dimmer, E., and Apweiler, R. 2004. The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase. In Silico Biol. 4: 5-6.
    • (2004) In Silico Biol. , vol.4 , pp. 5-6
    • Camon, E.1    Barrell, D.2    Lee, V.3    Dimmer, E.4    Apweiler, R.5
  • 6
    • 2942544229 scopus 로고    scopus 로고
    • COACH: Profile-profile alignment of protein families using hidden Markov models
    • Edgar, R.C. and Sjolander, K. 2004. COACH: Profile-profile alignment of protein families using hidden Markov models. Bioinformatics 20: 1309-1318.
    • (2004) Bioinformatics , vol.20 , pp. 1309-1318
    • Edgar, R.C.1    Sjolander, K.2
  • 8
    • 31844432664 scopus 로고    scopus 로고
    • Is GAS1 a co-receptor of the GDNF family of ligands?
    • Furman, O., Glick, E., Segovia, J., and Linial, M. 2006. Is GAS1 a co-receptor of the GDNF family of ligands? Trends Pharmacol. 2: 72-79.
    • (2006) Trends Pharmacol. , vol.2 , pp. 72-79
    • Furman, O.1    Glick, E.2    Segovia, J.3    Linial, M.4
  • 9
    • 0041620404 scopus 로고    scopus 로고
    • Detection of reliable and unexpected protein fold predictions using 3D-Jury
    • Ginalski, K. and Rychlewski, L. 2003. Detection of reliable and unexpected protein fold predictions using 3D-Jury. Nucleic Acids Res. 31: 3291-3292.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3291-3292
    • Ginalski, K.1    Rychlewski, L.2
  • 10
    • 0037271276 scopus 로고    scopus 로고
    • Fold recognition methods
    • Godzik, A. 2003. Fold recognition methods. Methods Biochem. Anal. 44: 525-546.
    • (2003) Methods Biochem. Anal. , vol.44 , pp. 525-546
    • Godzik, A.1
  • 11
    • 20744433230 scopus 로고    scopus 로고
    • Fold recognition by combining profile-profile alignment and support vector machine
    • Han, S., Lee, B.C., Yu, S.T., Jeong, C.S., Lee, S., and Kim, D. 2005. Fold recognition by combining profile-profile alignment and support vector machine. Bioinformatics 21: 2667-2673.
    • (2005) Bioinformatics , vol.21 , pp. 2667-2673
    • Han, S.1    Lee, B.C.2    Yu, S.T.3    Jeong, C.S.4    Lee, S.5    Kim, D.6
  • 14
    • 20444490097 scopus 로고    scopus 로고
    • Automatic detection of false annotations via binary property clustering
    • Kaplan, N. and Linial, M. 2005. Automatic detection of false annotations via binary property clustering. BMC Bioinformatics 6: 46.
    • (2005) BMC Bioinformatics , vol.6 , pp. 46
    • Kaplan, N.1    Linial, M.2
  • 15
    • 13244269904 scopus 로고    scopus 로고
    • A functional hierarchical organization of the protein sequence space
    • Kaplan, N., Friedlich, M., Fromer, M., and Linial, M. 2004. A functional hierarchical organization of the protein sequence space. BMC Bioinformatics 5: 196.
    • (2004) BMC Bioinformatics , vol.5 , pp. 196
    • Kaplan, N.1    Friedlich, M.2    Fromer, M.3    Linial, M.4
  • 17
    • 13244291417 scopus 로고    scopus 로고
    • Large scale hierarchical clustering of protein sequences
    • Krause, A., Stoye, J., and Vignron, M. 2005. Large scale hierarchical clustering of protein sequences. BMC Bioinformatics 6: 15.
    • (2005) BMC Bioinformatics , vol.6 , pp. 15
    • Krause, A.1    Stoye, J.2    Vignron, M.3
  • 19
    • 0037756727 scopus 로고    scopus 로고
    • How incorrect annotations evolve: The case of short ORFs
    • Linial, M. 2003. How incorrect annotations evolve: The case of short ORFs. Trends Biotechnol. 21: 298-300.
    • (2003) Trends Biotechnol. , vol.21 , pp. 298-300
    • Linial, M.1
  • 20
    • 0042233505 scopus 로고    scopus 로고
    • Growth arrest specific gene 1: A fuel for driving growth in the cerebellum
    • Marques, G. and Fan, C.M. 2002. Growth arrest specific gene 1: A fuel for driving growth in the cerebellum. Cerebellum 1: 259-263.
    • (2002) Cerebellum , vol.1 , pp. 259-263
    • Marques, G.1    Fan, C.M.2
  • 21
    • 3242876311 scopus 로고    scopus 로고
    • BLAST: At the core of a powerful and diverse set of sequence analysis tools
    • McGinnis, S. and Madden, T.L. 2004. BLAST: At the core of a powerful and diverse set of sequence analysis tools. Nucleic Acids Res. 32: W20-W25.
    • (2004) Nucleic Acids Res. , vol.32
    • McGinnis, S.1    Madden, T.L.2
  • 24
    • 0036152032 scopus 로고    scopus 로고
    • Growth, hedgehog and the price of GAS
    • Mullor, J.L. and Ruiz i Altaba, A. 2002. Growth, hedgehog and the price of GAS. Bioessays 24: 22-26.
    • (2002) Bioessays , vol.24 , pp. 22-26
    • Mullor, J.L.1    Ruiz I Altaba, A.2
  • 25
    • 33744456802 scopus 로고    scopus 로고
    • Ph.D. thesis. School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel
    • Sasson, O. 2005. "The protein metric space: A study in clustering." Ph.D. thesis. School of Computer Science and Engineering, The Hebrew University of Jerusalem, Israel.
    • (2005) The Protein Metric Space: a Study in Clustering
    • Sasson, O.1
  • 27
    • 6344243343 scopus 로고    scopus 로고
    • A robust method to detect structural and functional remote homologues
    • Shachar, O. and Linial, M. 2004. A robust method to detect structural and functional remote homologues. Proteins 57: 531-538.
    • (2004) Proteins , vol.57 , pp. 531-538
    • Shachar, O.1    Linial, M.2
  • 28
    • 0034060287 scopus 로고    scopus 로고
    • Structural genomics and its importance for gene function analysis
    • Skolnick, J., Fetrow, J.S., and Kolinski, A. 2000. Structural genomics and its importance for gene function analysis. Nat. Biotechnol. 18: 283-287.
    • (2000) Nat. Biotechnol. , vol.18 , pp. 283-287
    • Skolnick, J.1    Fetrow, J.S.2    Kolinski, A.3
  • 29
    • 0036889686 scopus 로고    scopus 로고
    • Orthology, paralogy and proposed classification for paralog subtypes
    • Sonnhammer, E.L. and Koonin, E.V. 2002. Orthology, paralogy and proposed classification for paralog subtypes. Trends Genet. 18: 619-620.
    • (2002) Trends Genet. , vol.18 , pp. 619-620
    • Sonnhammer, E.L.1    Koonin, E.V.2
  • 30
    • 20744453541 scopus 로고    scopus 로고
    • Biological applications of support vector machines
    • Yang, Z.R. 2004. Biological applications of support vector machines. Brief. Bioinform. 5: 328-338.
    • (2004) Brief. Bioinform. , vol.5 , pp. 328-338
    • Yang, Z.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.