Bioenergetics of archaea: ATP synthesis under harsh environmental conditions

Journal of Molecular Microbiology and Biotechnology

Volumn 10, Issue 2-4, 2006, Pages 167-180

  Muller V ^a   Lemker, T ^a   Lingl, A ^a   Weidner, C ^a   Coskun, U ^b   Gruber G ^b,c  

^a GOETHE UNIVERSITY   (Germany)

^b SAARLAND UNIVERSITY   (Germany)

^c NANYANG TECHNOLOGICAL UNIVERSITY   (Singapore)

Author keywords

A 1A 0 ATPase; Archaea; Ion specificity; Methanogens; Rotor diversity

Indexed keywords

ADENOSINE TRIPHOSPHATE; BACTERIAL ENZYME; PROTEIN SUBUNIT; PROTON TRANSPORTING ADENOSINE TRIPHOSPHATE SYNTHASE;

ADAPTATION; ARCHAEBACTERIUM; BIOENERGY; ENERGY CONSERVATION; ENZYME CONFORMATION; ENZYME SUBUNIT; NONHUMAN; PH; PROTEIN DOMAIN; SALINITY; SHORT SURVEY; STOICHIOMETRY; TEMPERATURE SENSITIVITY;

ADENOSINE TRIPHOSPHATE; ARCHAEA; ARCHAEAL PROTEINS; DIMERIZATION; ENERGY METABOLISM; EVOLUTION; HYDROGEN-ION CONCENTRATION; PROTEIN BINDING; PROTEIN CONFORMATION; PROTEIN SUBUNITS; PROTON-TRANSLOCATING ATPASES; TEMPERATURE;

EID: 33744456242     PISSN: 14641801     EISSN: None     Source Type: Journal    
DOI: 10.1159/000091563     Document Type: Short Survey

References (93)

1. 1-ATPase from bovine heart mitochondria. Nature 1994;370:621-628.
2. Adams MWW: Biochemical diversity among sulfur-dependent, hyperthermophilic microorganisms. FEMS Microbiol Rev 1994;15:261-277.
3. Ahmed H, Ettema TJ, Tjaden B, Geerling AC, van der Oost J, Siebers B: The semi-phosphorylative Entner-Doudoroff pathway in hyperthermophilic Archaea - a re-evaluation. Biochem J 2005;390:529-540.
4. Ahmed H, Tjaden B, Hensel R, Siebers B: Embden-Meyerhof-Parnas and Entner-Doudoroff pathways in Thermoproteus tenax: metabolic parallelism or specific adaptation? Biochem Soc Trans 2004;32:303-304.
5. Armbrüster A, Svergun DI, Coskun Ü, Juliano S, Bailer SM, Grüber G: Structural analysis of the stalk subunit Vma5p of the yeast V-ATPase in solution. FEBS Lett 2004;570:119-125.
6. 3 constitute a mixed c-oligomer. J Biol Chem 2000;275:33297-33301.
7. Boekema EJ, Ubbink-Kok T, Lolkema JS, Brisson A, Konings WN: Structure of V-type ATPase from Clostridium fervidus by electron microscopy. Photosyn Res 1998;57:267-273.
8. 0-ATPase and how it binds an α subunit. J Mol Biol 2005;351:824-838.
9. Coskun Ü, Chaban YL, Lingl A, Müller V, Keegstra W, Boekema EJ, Grüber G: Structure and subunit arrangement of the A-type ATP synthase complex from the archaeon Methanococcus jannaschii visualized by electron microscopy. J Biol Chem 2004a;279:38644-38648.
10. 1-ATPase from Methanosarcina mazei Gö1 due to nucleotide-binding. J Biol Chem 2002;277:17327-17333.
11. 1-ATPase from Methanosarcina mazei Gö1. J Biol Chem 2004b;279:22759-22764.
12. +/ATP stoichiometry. FEBS Lett 2004;576:1-4.
13. 1 ATPases and synthases. FEBS Lett 1990;259:22227-22229.
14. 0 complex. Annu Rev Microbiol 1996;50:791-824.
15. Deppenmeier U: Redox-driven proton translocation in methanogenic Archaea. Cell Mol Life Sci 2002a;59:1-21.
16. Deppenmeier U: The unique biochemistry of methanogenesis. Prog Nucleic Acid Res Mol Biol 2002b;71:223-283.
17. Dimroth P: Primary sodium ion translocating enzymes. Biochim Biophys Acta 1997;1318:11-51.
18. Dimroth P, Wang H, Grabe M, Oster G: Energy transduction in the sodium F-ATPase of Propionigenium modestum. Proc Natl Acad Sci USA 1999;96:4924-4929.
19. 0 ATP synthase. Biochim Biophys Acta 2000;1458:387-403.
20. 0-type enzyme as deduced from the primary structure of its β, γ and ε subunits. Biochim Biophys Acta 1995;1229:393-397.
21. Galagan JE, et al: The genome of Methanosarcina acetivorans reveals extensive metabolic and physiological diversity. Genome Res 2002;12:532-542.
22. Gogarten JP, Taiz L: Evolution of proton pumping ATPases - rooting the tree of life. Photosynth Res 1992;33:137-146.
23. +-translocating methyltransferase complex from methanogenic Archaea. Biochim Biophys Acta 2001;1505:28-36.
24. 1-ATPase. J Bioenerg Biomembr 2000;32:341-346.
25. 0 ATPases. Biochem Soc Trans 2005;33:883-885.
26. 1 ATPase from Manduca sexta midgut. Biochemistry 2000;39:8609-8616.
27. 1 ATPase from the archaeon, Methanosarcina mazei Gö1. Biochemistry 2001a;40:1890-1896.
28. Grüber G, Wieczorek H, Harvey WR, Müller V: Structure-function relationships of A-, F- and V-ATPases. J Exp Biol 2001b;204:2597-2605.
29. Heefner DL, Harold FM: ATP-driven sodium pump in Streptococcus faecalis. Proc Natl Acad Sci USA 1982;79:2798-2802.
30. Hilario E, Gogarten JP: The prokaryote-to-eucaryote transition reflected in the evolution of the V/F/A-ATPase catalytic and proteolipid subunits. J Mol Evol 1998;46:703-715.
31. +-ATPase. J Biol Chem 1997;272:4795-4803.
32. Hunt IE, Bowman BJ: The intriguing evolution of the 'b' and 'G' subunits in F-type and V-type ATPases: isolation of the vma-10 gene from Neurospora crassa. J Bioenerg Biomembr 1997;29:533-540.
33. Ihara K, Watanabe S, Sugimura K, Mukohata Y: Identification of proteolipid from an extremely halophilic archaeon Halobacterium salinarum as an N′,N′-dicyclohexyl-carbodiimide binding subunit of ATP synthase. Arch Biochem Biophys 1997;341:267-272.
34. Inatomi KI, Maeda M, Futai M: Dicyclohexylcarbodiimide-binding protein is a subunit of the Methanosarcina barkeri ATPase complex. Biochem Biophys Res Commun 1989;162:1585-1590.
35. 1-ATPase inhibited by ADP and beryllium fluoride. EMBO J 2004;23:2734-2744.
36. + in the c subunit of the ATP synthase from Propionigenium modestum. Biochemistry 1997;36:9185-9194.
37. Kawarabayasi Y, et al: Complete sequence and gene organization of the genome of a hyperthermophilic archaebacterium Pyrococcus horikoshii OT3. DNA Res 1998;5:147-155.
38. Kawasaki-Nishi S, Nishi T, Forgac M: Arg-735 of the 100 kDa subunit a of the yeast V-ATPase is essential for proton translocation. Proc Natl Acad Sci USA 2001;98:12397-12402.
39. Krulwich TA, Ito M, Gilmour R, Sturr MG, Guffanti AA, Hicks DB: Energetic problems of extremely alkaliphilic aerobes. Biochim Biophys Acta 1996;1275:21-26.
40. Laubinger W, Dimroth P: Characterization of the ATP synthase of Propionigenium modestum as a primary sodium pump. Biochemistry 1988;27:7531-7537.
41. 1 ATPase from the archaeon Methanosarcina mazei Gö1: biochemical properties and redox regulation. FEBS Lett 2003;544:206-209.
42. +-ATPases. Proc Natl Acad Sci USA 1988;85:5521-5524.
43. McCarthy JE, Gerstel B, Surin B, Wiedemann U, Ziemke P: Differential gene expression from the Escherichia coli atp operon mediated by segmental differences in mRNA stability. Mol Microbiol 1991;10:2447-2258.
44. McCarthy JE, Schairer HU, Sebald W: Translational initiation frequency of atp genes from Escherichia coli: identification of an intercistronic sequence that enhances translation. EMBO J 1985;4:519-526.
45. Meier T, Matthey U, von Ballmoos C, Vonck J, Krug von Nidda T, Kühlbrandt W, Dimroth P: Evidence for structural integrity in the undecameric c-rings isolated from sodium ATP synthases. J Mol Biol 2003;325:389-397.
46. +-ATPase from Ilyobacter tartaricus. Science 2005;308:659-662.
47. Meier T, Yu J, Raschle T, Henzen F, Dimroth P, Müller DJ: Structural evidence for a constant c11 ring stoichiometry in the sodium F-ATP synthase. FEBS J 2005;272:5474-5483.
48. 1-ATPase with nucleotide bound to all three catalytic sites: implications for the mechanism of rotary catalysis. Cell 2001;106:331-341.
49. Müller V: Energy conservation in acetogenic bacteria. Appl Environ Microbiol 2003;69:6345-6353.
50. 0 ATPases: from multimeric to monomeric rotors comprising 6-13 ion binding sites. J Bioenerg Biomembr 2004;36:115-125.
51. 0-ATPase with a mixed oligomer of 8 and 16 kDa proteolipids. Biochim Biophys Acta 2001;1505:108-120.
52. Müller V, Grüber G: ATP synthases: structure, function and evolution of unique energy converters. Cell Mol Life Sci 2003;60:474-494.
53. 0 ATPases from methanogenic Archaea. J Bioenerg Biomembr 1999;31:15-28.
54. +-ATPase from Enterococcus hirae. Science 2005;308:654-659.
55. Nelson N: Evolution of organellar proton-ATPases. Biochim Biophys Acta 1992;1100:109-124.
56. 0 ATPase of Ilyobacter tartaricus, a sodium ion pump. J Bacteriol 1998;180:3312-3316.
57. +-ATPases - Nature's most versatile proton pumps. Nat Rev Mol Cell Biol 2002;3:94-103.
58. Olendzenski L, Hilario E, Gogarten JP: Horizontal gene transfer and fusing lines of descent: the Archaeabacteria - a chimera? In Syvanen K, Kado CI (eds): Horizontal Gene Transfer. New York, Chapman & Hall, 1998, pp 349-362.
59. 1. FEBS Lett 2000;472:34-38.
60. Pedersen PL, Ko YH, Hong S: ATP synthases in the year 2000: evolving views about the structures of these remarkable enzyme complexes. J Bioenerg Biomembr 2000;32:325-332.
61. 0 symmetry mismatch is not obligatory. EMBO Rep 2005;6:1040-1044.
62. 1 ATPase visualized by electron microscopy. FEBS Lett 1999;453:383-386.
63. 1-ATPase determined by three-dimensional electron microscopy of single particles. J Struct Biol 2001;135:26-37.
64. 0-ATPase operon from Acetobacterium woodii. Operon structure and presence of multiple copies of atpE which encode proteolipids of 8-and 18-kDa. J Biol Chem 1999;274:33999-34004.
65. + specificity as revealed by sequence comparisons. FEBS Lett 1997;404:269-271.
66. 0-type enzyme. Eur J Biochem 1994;223:275-283.
67. Robb FT, Maeder DL, Brown JR, DiRuggiero J, Stump MD, Yeh RK, Weiss RB, Dunn DM: Genomic sequence of hyperthermophile Pyrococcus furiosus: implications for physiology and enzymology. Methods Enzymol 2001;330:134-157.
68. 0 ATP synthase from Methanococcus jannaschii has six predicted transmembrane helices but only two proton-translocating carboxyl groups. J Biol Chem 1999;274:25281-25284.
69. 0 ATPase from Methanosarcina mazei: cloning of the 5′ end of the aha operon encoding the membrane domain and expression of the proteolipid in a membrane-bound form in Escherichia coli. J Bacteriol 1998;180:3448-3452.
70. Sagermann M, Stevens TH, Matthews BW: Crystal structure of the regulatory subunit H of the V-type ATPase of Saccharomyces cerevisiae. Proc Natl Acad Sci USA 2001;98:7134-7139.
71. 1): direct observation. Science 1999;286:1722-1724.
72. Sapra R, Bagramyan K, Adams MW: A simple energy-conserving system: proton reduction coupled to proton translocation. Proc Natl Acad Sci USA 2003;100:7545-7550.
73. Schäfer G, Engelhard M, Müller V: Bioenergetics of the Archaea. Microbiol Mol Biol Rev 1999;63:570-620.
74. 0 ATPase of Escherichia coli. J Bacteriol 1998;180:3205-3208.
75. Seelert H, Poetsch A, Dencher NA, Engel A, Stahlberg H, Müller DJ: Structural biology. Proton-powered turbine of a plant motor. Nature 2000;405:418-419.
76. 1-ATPase. Biochem Soc Trans 1995;23:747-752.
77. Slesarev AI, et al: The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens. Proc Natl Acad Sci USA 2002;99:4644-4649.
78. Steinert K, Wagner V, Kroth-Pancic PG, Bickel-Sandkötter S: Characterization and subunit structure of the ATP synthase of the halophilic archaeon Haloferax volcanii and organization of the ATP synthase genes. J Biol Chem 1997;272:6261-6269.
79. Stock D, Gibbons C, Arechaga I, Leslie AG, Walker JE: The rotary mechanism of ATP synthase. Curr Opin Struct Biol 2000;10:672-679.
80. Stock D, Leslie AG, Walker JE: Molecular architecture of the rotary motor in ATP synthase. Science 1999;286:1700-1705.
81. 1-ATPase genes from an archaebacterium Methanosarcina barkeri. Biochem Biophys Res Commun 1997;241:427-433.
82. 1 ATPase from X-ray solution scattering and evidence for structural changes in the δ subunit during ATP hydrolysis. Biophys J 1998;75:2212-2219.
83. Thauer RK: Energy metabolism of methanogenic bacteria. Biochim Biophys Acta 1990;1018:256-259.
84. Thauer RK, Jungermann K, Decker K: Energy conservation in chemotrophic anaerobic bacteria. Bacteriol Rev 1977;41:100-180.
85. Verhees CH, Kengen SW, Tuininga JE, Schut GJ, Adams MW, De Vos WM, Van Der Oost J: The unique features of glycolytic pathways in Archaea. Biochem J 2003;375:231-246.
86. Wieczorek H, Brown D, Grinstein S, Ehrenfeld J, Harvey WR: Animal plasma membrane energization by proton motive V-ATPases. Bioessays 1999;21:637-648.
87. Wilkens S, Forgac M: Three-dimensional structure of the vacuolar ATPase proton channel by electron microscopy. J Biol Chem 2001;276:44064-44068.
88. 0 ATPase from the archaeon Methanosarcina mazei Gö1. J Biol Chem 1996;271:18843-18852.
89. Winstedt L, Frankenberg L, Hederstedt L, von Wachenfeldt C: Enterococcus faecalis V583 contains a cytochrome bd-type respiratory oxidase. J Bacteriol 2000;182:3863-3866.
90. Woese CR, Kandler O, Wheelis ML: Towards a natural system of organisms: proposal for the domains Archaea, Bacteria and Eucarya. Proc Natl Acad Sci USA 1990;87:4576-4579.
91. +-ATPase complex. J Biol Chem 1999;274:28909-28915.
92. Yoshida M, Muneyuki E, Hisabori T: ATP synthase - a marvelous rotary engine of the cell. Nat Rev Mol Cell Biol 2001;2:669-677.
93. +-transporting ATP synthase by directed mutagenesis of subunit c. J Biol Chem 1995;270:87-93.