Parasitism Between Co-Infecting Bacteriophages

Advances in Ecological Research

Volumn 37, Issue , 2005, Pages 309-332

  Turner, Paul E ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

EID: 33646882815     PISSN: 00652504     EISSN: None     Source Type: Book Series    
DOI: 10.1016/S0065-2504(04)37010-8     Document Type: Review

References (83)

1. Antia R., Nowak M.A., and Anderson R.M. Antigenic variation and the within-host dynamics of parasites. Proc. Natl. Acad. Sci. USA 93 (1996) 985-989
2. Axelrod R. The Evolution of Cooperation (1985), Basic Books, Boulder, CO
3. Barton N.H., and Charlesworth B. Why sex and recombination?. Science 281 (1998) 1987-1990
4. Bergh O., Borsheim K.Y., Bratbak G., and Heldal M. High abundance of viruses found in aquatic environments. Nature 340 (1989) 467-468
5. Breitbart M., Salamon P., Andresen B., Mahaffy J., Segall A., Mead D., Azam F., and Rohwer F. Genomic analysis of an uncultured marine viral community. Proc. Natl. Acad. Sci. USA 99 (2002) 14250-14255
6. Brown S.P. Collective action in an RNA virus. J. Evol. Biol. 14 (2001) 821-828
7. Burch C.I., and Chao L. Evolution by small steps and rugged landscapes in the RNA virus phi-6. Genetics 151 (1999) 921-927
8. Cairns J., Stent G.S., and Watson J.D. Phage and the Origins of Molecular Biology (1992), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
9. Chao L. Evolution of sex in RNA viruses. J. Theor. Biol. 133 (1988) 99-112
10. Chao L. Fitness of RNA virus decreased by Muller's ratchet. Nature 348 (1990) 454-455
11. Chao L., Tran T.T., and Tran T.T. The advantage of sex in the RNA virus φ{symbol}6. Genetics 147 (1997) 953-959
12. Chao L., Hanley K.A., Burch C.L., Dahlberg C., and Turner P.E. Kin selection and parasite evolution: Higher and lower virulence with hard and soft selection. Q. Rev. Biol. 75 (2000) 261-275
13. Cohen M.S. Sexually transmitted diseases enhance HIV transmission: No longer a hypothesis. Lancet 351 Suppl. 3 (1998) 5-7
14. Crick F.H.C., Barnett L., Brenner S., and Watts-Tobin R.J. General nature of the genetic code for proteins. Nature 192 (1961) 1227-1232
15. Dugatkin L.A. Cooperation among Animals: An Evolutionary Perspective (1997), Oxford University Press, Oxford
16. Duhaut S.D., and Dimmock N.J. Heterologous protection of mice from a lethal human H1N1 influenza A virus infection by H3N8 equine defective interfering virus: Comparison of defective RNA sequences isolated from the DI inoculum and mouse lung. Virology 248 (1998) 241-253
17. Elena S.F., Miralles R., and Moya A. Frequency-dependent selection in a mammalian RNA virus. Evolution 51 (1997) 984-987
18. Fisher R.A. The Genetical Theory of Natural Selection (1930), Oxford University Press, Oxford, UK
19. Frank S.A. A kin selection model for the evolution of virulence. Proc. R. Soc. Lond. B 250 (1992) 195-197
20. Frank S.A. Models of parasite virulence. Q. Rev. Biol. 71 (1996) 47-78
21. Frank S.A. Within-host spatial dynamics of viruses and defective interfering particles. J. Theor. Biol. 206 (2000) 279-290
22. Frank S.A. Immunology and Evolution of Infectious Disease (2002), Princeton University Press, Princeton, NJ
23. Fuhrman J.A. Marine viruses and their biogeochemical and ecological effects. Nature 399 (1999) 541-548
24. Hammond J., Lecoq H., and Raccah B. Epidemiological risks from mixed virus infections and transgenic plants expressing viral genes. Adv. Virus. Res. 54 (1999) 189-314
25. Holland J. Defective viral genomes. In: Fields B., and Knipe D. (Eds). Fundamental Virology. 2nd ed (1991), Raven Press, New York, NY 151-165
26. Holland J.J., de la Torre J.C., Clarke D.K., and Duarte E. Quantitation of relative fitness and great adaptability of clonal populations of RNA viruses. J. Virol. 65 (1991) 2960-2967
27. Horiuchi K. Genetic studies of RNA phages. In: Zinder N.D. (Ed). RNA Phages (1975), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 29-50
28. Horwitz J.P., Chua J., Curby R.J., Tomson A.J., Da Rooge M.A., Fisher B.E., Mauricio J., and Klundt I. Substrates for cytochemical demonstration of enzyme activity I. Some substituted 3-inodoly1-β-D-glycopyranosides. J. Med. Chem. 7 (1964) 574-575
29. Huang A.S., and Baltimore D. Defective viral particles and viral disease processes. Nature 226 (1970) 325-327
30. In: Hurst C.J. (Ed). Viral Ecology (2000), Academic Press, San Diego, CA
31. In: Knipe D.M., and Howley P.M. (Eds). Fields Virology. 4th ed (2001), Lippincott Williams & Wilkins, Philadelphia, PA
32. Kohler R.E. Lords of the Fly (1994), University of Chicago Press, Chicago, IL
33. Lenski R.E. Experimental evolution. In: Pagel M.D. (Ed). Encyclopedia of Evolution (2002), Oxford University Press, Oxford 339-344
34. Levin S., and Pimentel D. Selection of intermediate rates of increase in parasite-host systems. Am. Nat. 117 (1981) 308-315
35. Lewontin R.C. The units of selection. Annu. Rev. Ecol. Syst. 1 (1970) 1-18
36. Li T., and Pattnaik A.K. Replication signals in the genome of vesicular stomatitis virus and its defective interfering particles: Identification of a sequence element that enhances DI RNA replication. Virology 232 (1997) 248-259
37. Lopez-Ferber M., Simon O., Williams T., and Caballero P. Defective or effective? Mutualistic interactions between virus genotypes. Proc. R. Soc. Lond. B 270 (2003) 2249-2255
38. Lu M., and Henning U. Superinfection exclusion by T-even-type coliphages. Trends Microbiol. 2 (1994) 137-139
39. Luria S.E., and Delbruck M. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28 (1943) 491-511
40. Lythgoe K.A., and Chao L. Mechanisms of coexistence of a bacteria and a bacteriophage in a spatially homogeneous environment. Ecol. Lett. 6 (2003) 326-334
41. May R.M., and Nowak M.A. Coinfection and the evolution of parasite virulence. Proc. R. Soc. Lond. B 261 (1995) 209-215
42. Michod R.E., and Levin B.R. The Evolution of Sex. An Examination of Current Ideas (1988), Sinauer, Sunderland, MA
43. Mindich L. Reverse genetics of dsRNA bacteriophage phi-6. Adv. Virus Res. 53 (1999) 341-353
44. Mindich L., Sinclair J.F., Levine D., and Cohen J. Genetic studies of temperature-sensitive and nonsense mutants of bacteriophage φ{symbol}6. Virology 75 (1976) 218-223
45. Mindich L., Qiao X., Qiao J., Onodera S., Romantschuk M., and Hoogstraten D. Isolation of additional bacteriophages with genomes of segmented double-stranded RNA. J. Bact. 181 (1999) 4505-4508
46. Mosquera J., and Adler F.R. Evolution of virulence: A unified framework for coinfection and superinfection. J. Theor. Biol. 195 (1998) 293-313
47. Muller H.J. Some genetic aspects of sex. Am. Nat. 66 (1932) 118-138
48. Nagy P.D., and Simon A.E. New insights into the mechanisms of RNA recombination. Virology 235 (1997) 1-9
49. Nee S. Mutualism, parasitism, and competition in the evolution of coviruses. Phil. Trans. R. Soc. Lond. B 355 (2000) 1607-1613
50. Nee S., and Maynard Smith J. The evolutionary biology of molecular parasites. Parasitology 100 Suppl. S5-S18 (1990)
51. Nelson G.W., and Perelson A.S. Modeling defective interfering virus therapy for AIDS: Conditions for DIV survival. Math. Biosci. 125 (1995) 127-153
52. Nowak M.A., and May R.M. Superinfection and the evolution of parasite virulence. Proc. R. Soc. Lond. B 255 (1994) 81-89
53. Nowak M.A., and May R.M. Virus Dynamics: The Mathematical Foundations of Immunology and Virology (2000), Oxford University Press, Oxford
54. Olkkonen V.M., and Bamford D.H. Quantitation of the adsorption and penetration stages of bacteriophage φ{symbol}6 infection. Virology 171 (1989) 229-238
55. Onodera S., Qiao X., Gottlieb P., Strassman J., Frilander M., and Mindich L. RNA structure and heterologous recombination in the double-stranded RNA bacteriophage φ{symbol}6. J. Virol. 67 (1993) 4914-4922
56. Paul J.H., and Kellogg C.A. Ecology of bacteriophages in nature. In: Hurst C.J. (Ed). Viral Ecology (2000), Academic Press, San Diego, CA 211-216
57. Petney T.N., and Andrews R.H. Multiparasite communities in animals and humans: frequency, structure and pathogenic significance. Int. J. Parasitol. 28 (1998) 377-393
58. Popham E.J. Further experimental studies on the selective action of predators. Proc. Zool. Soc. Lond. 112 (1942) 105-117
59. Pressing J., and Reanney D.C. Divided genomes and intrinsic noise. J. Mol. Evol. 20 (1984) 135-146
60. Qiao J., Qiao X., Sun Y., and Mindich L. Isolation and analysis of mutants of double-stranded-RNA bacteriophage φ{symbol}6 with altered packaging specificity. J. Bacteriol. 185 (2003) 4572-4577
61. Read A.F., and Taylor L.H. Within-host ecology of infectious diseases: Patterns and consequences. In: Thompson R.C.A. (Ed). Molecular Epidemiology of Infectious Diseases (2000), Arnold, London 59-75
62. Read A.F., and Taylor L.H. The ecology of genetically diverse infections. Science 292 (2001) 1099-1102
63. Rose J.K., and Whitt M.A. Rhabdoviridae: The viruses and their replication. In: Knipe D.M., and Howley P.M. (Eds). Fields Virology (2001), Lippincott Williams & Wilkins, Philadelphia, PA 1221-1244
64. Rosenzweig R.F., Sharp R.R., Treves D.S., and Adams J. Microbial evolution in a simple unstructured environment: Genetic differentiation in Escherichia coli. Genetics 137 (1994) 903-917
65. Rozen D.E., and Lenski R.E. Long-term experimental evolution in Escherichia coli. VIII. Dynamics of a balanced polymorphism. Am. Nat. 155 (2000) 24-35
66. Sevilla N., Ruiz-Jarabo C.M., Gomez-Mariano G., Baranowski E., and Domingo E. An RNA virus can adapt to the multiplicity of infection. J. Gen. Virol. 79 (1998) 2971-2980
67. Singh I., Suomalainen M., Varadarajan S., Garoff H., and Helenius A. Multiple mechanisms for the inhibition of entry and uncoating of superinfecting Semliki Forest virus. Virology 231 (1997) 59-71
68. Sokal R.R., and Rohlf F.J. Biometry. 3rd ed (1995), Freeman, San Francisco, CA
69. Szathmary E. Co-operation and defection: Playing the field in virus dynamics. J. Theor. Biol. 165 (1993) 341-356
70. Tsiamis G., Mansfield J.W., Hockenhull R., Jackson R.W., Sesma A., Athanassopoulos E., Bennett M.A., Stevens C., Vivian A., Taylor J.D., and Murillo J. Cultivar-specific avirulence and virulence functions assigned to avrPphF in Pseudomonas syringae pv. phaseolicola, the cause of bean halo-blight disease. EMBO J. 19 (2000) 1-11
71. Turner P.E. Searching for the advantages of virus sex. Orig. Life Evol. Biosph. 33 (2003) 95-108
72. Turner P.E., and Chao L. Sex and the evolution of intrahost competition in RNA virus φ{symbol}6. Genetics 150 (1998) 523-532
73. Turner P.E., and Chao L. Prisoner's dilemma in an RNA virus. Nature 398 (1999) 441-443
74. Turner P.E., and Chao L. Escape from prisoner's dilemma in RNA phage φ{symbol}6. Am. Nat. 161 (2003) 497-505
75. Turner P.E., and Elena S.F. Cost of host radiation in an RNA virus. Genetics 156 (2000) 1465-1470
76. Turner P.E., Burch C., Hanley K., and Chao L. Hybrid frequencies confirm limit to coinfection in the RNA bacteriophage φ{symbol}6. J. Virol. 73 (1999) 2420-2424
77. Turner P.E., Souza V., and Lenski R.E. Tests of ecological mechanisms promoting the stable coexistence of two bacterial genotypes. Ecology 77 (1996) 2119-2129
78. van Baalen M., and Sabelis M.W. The dynamics of multiple infection and the evolution of virulence. Am. Nat. 146 (1995) 881-910
79. Vidaver K.A., Koski R.K., and Van Etten J.L. Bacteriophage φ{symbol}6: A lipid-containing virus of. Pseudomonas phaseolicola. J. Virol. 11 (1973) 799-805
80. In: Vogt P.K., and Jackson A.O. (Eds). Current Topics in Microbiology & Immunology Vol. 239 (1999), Springer-Verlag, New York Satellites and defective viral RNAs.
81. West S.A., Lively C.M., and Read A.F. A pluralist approach to sex and recombination. J. Evol. Biol. 12 (1999) 1003-1012
82. Whelan S.P.J., and Wertz G.W. Defective interfering particles of vesicular stomatitis virus: Functions of the genomic termini. Sem. Virol. 8 (1997) 131-139
83. Wommack K.E., and Colwell R.R. Virioplankton: Viruses in aquatic ecosystems. Microbiol. Mol. Biol. R. 64 (2000) 69-114