메뉴 건너뛰기




Volumn 5, Issue 3, 2006, Pages 291-308

Generation of the exact distribution and simulation of matched nucleotide sequences on a phylogenetic tree

Author keywords

Markov processes on trees; Monte Carlo simulations

Indexed keywords


EID: 33646876774     PISSN: 15701166     EISSN: 15729214     Source Type: Journal    
DOI: 10.1007/s10852-005-9017-y     Document Type: Article
Times cited : (17)

References (16)
  • 2
    • 0034983477 scopus 로고    scopus 로고
    • Effects of nucleotide compositional bias in the success of the parsimony criterion in phylogenetic inference
    • Conant, G. C. and Lewis, P. O.: Effects of nucleotide compositional bias in the success of the parsimony criterion in phylogenetic inference, Mol. Biol. Evol. 18 (2001), 1024-1033.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1024-1033
    • Conant, G.C.1    Lewis, P.O.2
  • 3
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J.: Evolutionary trees from DNA sequences: A maximum likelihood approach, J. Mol. Evol. 17 (1981), 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 6
    • 0028887457 scopus 로고
    • Success of maximum likelihood phylogeny inference in the four-taxon case
    • Gaut, B. S. and Lewis, P. O.: Success of maximum likelihood phylogeny inference in the four-taxon case, Mol. Biol. Evol. 12 (1995), 152-162.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 152-162
    • Gaut, B.S.1    Lewis, P.O.2
  • 7
    • 4644252702 scopus 로고    scopus 로고
    • Tracing the decay of the historical signal in biological sequence data
    • Ho, S. Y. W. and Jermiin, L. S.: Tracing the decay of the historical signal in biological sequence data, Syst. Biol. 53 (2004), 623-637.
    • (2004) Syst. Biol. , vol.53 , pp. 623-637
    • Ho, S.Y.W.1    Jermiin, L.S.2
  • 9
    • 4644299089 scopus 로고    scopus 로고
    • The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated
    • Jermiin, L. S., Ho, S. Y. W., Ababneh, F., Robinson, J. and Larkum, A. W. D.: The biasing effect of compositional heterogeneity on phylogenetic estimates may be underestimated. Syst. Biol. 53 (2004), 638-643.
    • (2004) Syst. Biol. , vol.53 , pp. 638-643
    • Jermiin, L.S.1    Ho, S.Y.W.2    Ababneh, F.3    Robinson, J.4    Larkum, A.W.D.5
  • 10
    • 0028181246 scopus 로고
    • Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances
    • Lake, J. A.: Reconstructing evolutionary trees from DNA and protein sequences: Paralinear distances. Proc. Natl. Acad. Sci. USA. 91 (1994), 1155-1159.
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 1155-1159
    • Lake, J.A.1
  • 11
    • 0028361182 scopus 로고
    • Recovering evolutionary trees under a more realistic model of sequence evolution
    • Lockhart, P. J., Steel, M. A., Hendy, M. D. and Penny, D.: Recovering evolutionary trees under a more realistic model of sequence evolution, Mol. Biol. Evol. 11 (1994), 605-612.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 605-612
    • Lockhart, P.J.1    Steel, M.A.2    Hendy, M.D.3    Penny, D.4
  • 12
    • 0030928378 scopus 로고    scopus 로고
    • Seq-gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
    • Rambaut, A. and Grassly, N. C.: Seq-Gen: An application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees, Comput. Appl. Biosci. 13 (1997), 235-238.
    • (1997) Comput. Appl. Biosci. , vol.13 , pp. 235-238
    • Rambaut, A.1    Grassly, N.C.2
  • 13
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • D. M. Hillis, D. Moritz and B. K. Mable (eds), Sinauer, Sunderland, Massachusetts, USA
    • Swofford, D. L., Olsen, G. J., Waddell, P. J. and Hillis, D. M.: Phylogenetic inference, in D. M. Hillis, D. Moritz and B. K. Mable (eds), Molecular Systematics, 2nd Edn., Sinauer, Sunderland, Massachusetts, USA, 1996, pp. 407-514.
    • (1996) Molecular Systematics, 2nd Edn. , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 14
    • 0002671410 scopus 로고
    • Some probabilistic and statistical problems on the analysis of DNA sequences
    • Tavaré, S.: Some probabilistic and statistical problems on the analysis of DNA sequences, Lect. Math. Life Sci. 17 (1986), 57-86.
    • (1986) Lect. Math. Life Sci. , vol.17 , pp. 57-86
    • Tavaré, S.1
  • 15
    • 0032248712 scopus 로고    scopus 로고
    • Base compositional bias and phylogenetic analyses: A test of the "flying DNA" hypothesis
    • Van, Den Bussche, R. A., Baker, R. J., Huelsenbeck, J. P. and Hillis, D. M.: Base compositional bias and phylogenetic analyses: A test of the "flying DNA" hypothesis, Mol. Phylogenet. Evol. 10 (1998), 408-416.
    • (1998) Mol. Phylogenet. Evol. , vol.10 , pp. 408-416
    • Van Den Bussche, R.A.1    Baker, R.J.2    Huelsenbeck, J.P.3    Hillis, D.M.4
  • 16
    • 0028108336 scopus 로고
    • Estimation of evolutionary distances between nucleotide sequences
    • Zharkikh, A.: Estimation of evolutionary distances between nucleotide sequences, J. Mol. Evol. 39 (1994), 315-329.
    • (1994) J. Mol. Evol. , vol.39 , pp. 315-329
    • Zharkikh, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.