메뉴 건너뛰기




Volumn 78, Issue 6, 2006, Pages 903-913

Multilocus association mapping using variable-length Markov chains

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ALLELE; ARTICLE; CALCULATION; CYSTIC FIBROSIS; FOLLOW UP; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENETIC ASSOCIATION; GENETIC TRAIT; HAPLOTYPE; HUMAN; MODEL; MULTILOCUS ASSOCIATION MAPPING; PARSIMONY ANALYSIS; PRIORITY JOURNAL; PROBABILITY; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SINGLE NUCLEOTIDE POLYMORPHISM; VARIABLE LENGTH MARKOV CHAIN;

EID: 33646869900     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1086/503876     Document Type: Article
Times cited : (111)

References (35)
  • 1
    • 10044254265 scopus 로고    scopus 로고
    • The role of haplotypes in candidate gene studies
    • Clark AG (2004) The role of haplotypes in candidate gene studies. Genet Epidemiol 27:321-333
    • (2004) Genet Epidemiol , vol.27 , pp. 321-333
    • Clark, A.G.1
  • 2
    • 10044294770 scopus 로고    scopus 로고
    • Evaluating associations of haplotypes with traits
    • Schaid DJ (2004) Evaluating associations of haplotypes with traits. Genet Epidemiol 27:348-364
    • (2004) Genet Epidemiol , vol.27 , pp. 348-364
    • Schaid, D.J.1
  • 3
    • 0035058585 scopus 로고    scopus 로고
    • Haplotypes vs single marker linkage disequilibrium tests: What do we gain?
    • Akey J, Jin L, Xiong M (2001) Haplotypes vs single marker linkage disequilibrium tests: what do we gain? Eur J Hum Genet 9:291-300
    • (2001) Eur J Hum Genet , vol.9 , pp. 291-300
    • Akey, J.1    Jin, L.2    Xiong, M.3
  • 4
    • 0029130796 scopus 로고
    • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    • Excoffier L, Slatkin M (1995) Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol Biol Evol 12:921-927
    • (1995) Mol Biol Evol , vol.12 , pp. 921-927
    • Excoffier, L.1    Slatkin, M.2
  • 5
    • 0033990339 scopus 로고    scopus 로고
    • Model-free analysis and permutation tests for allelic associations
    • Zhao JH, Curtis D, Sham PC (2000) Model-free analysis and permutation tests for allelic associations. Hum Hered 50:133-139
    • (2000) Hum Hered , vol.50 , pp. 133-139
    • Zhao, J.H.1    Curtis, D.2    Sham, P.C.3
  • 6
    • 0344033602 scopus 로고    scopus 로고
    • Detecting disease associations due to linkage disequilibrium using haplotype tags: A class of tests and the determinants of statistical power
    • Chapman JM, Cooper JD, Todd JA, Clayton DG (2003) Detecting disease associations due to linkage disequilibrium using haplotype tags: a class of tests and the determinants of statistical power. Hum Hered 56:18-31
    • (2003) Hum Hered , vol.56 , pp. 18-31
    • Chapman, J.M.1    Cooper, J.D.2    Todd, J.A.3    Clayton, D.G.4
  • 7
    • 79959524146 scopus 로고    scopus 로고
    • A haplotype map of the human genome
    • The International HapMap Consortium (2005) A haplotype map of the human genome. Nature 437:1299-1320
    • (2005) Nature , vol.437 , pp. 1299-1320
  • 8
    • 0037340445 scopus 로고    scopus 로고
    • Haplotype analysis in population genetics and association studies
    • Zhao H, Pfeiffer R, Gail MH (2003) Haplotype analysis in population genetics and association studies. Pharmacogenomics 4:171-178
    • (2003) Pharmacogenomics , vol.4 , pp. 171-178
    • Zhao, H.1    Pfeiffer, R.2    Gail, M.H.3
  • 9
    • 13144282294 scopus 로고    scopus 로고
    • Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies
    • Lin S, Chakravarti A, Cutler DJ (2004) Exhaustive allelic transmission disequilibrium tests as a new approach to genome-wide association studies. Nat Genet 36:1181-1188
    • (2004) Nat Genet , vol.36 , pp. 1181-1188
    • Lin, S.1    Chakravarti, A.2    Cutler, D.J.3
  • 10
    • 4444327033 scopus 로고    scopus 로고
    • Gametic phase estimation over large genomic regions using an adaptive window approach
    • Excoffier L, Laval G, Balding D (2003) Gametic phase estimation over large genomic regions using an adaptive window approach. Hum Genomics 1:7-19
    • (2003) Hum Genomics , vol.1 , pp. 7-19
    • Excoffier, L.1    Laval, G.2    Balding, D.3
  • 11
    • 0023425198 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila
    • Templeton AR, Boerwinkle E, Sing CF (1987) A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics 117:343-351
    • (1987) Genetics , vol.117 , pp. 343-351
    • Templeton, A.R.1    Boerwinkle, E.2    Sing, C.F.3
  • 12
    • 0345269986 scopus 로고    scopus 로고
    • On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit
    • Tzeng J-Y, Devlin B, Wasserman L, Roeder K (2003) On the identification of disease mutations by the analysis of haplotype similarity and goodness of fit. Am J Hum Genet 72:891-902
    • (2003) Am J Hum Genet , vol.72 , pp. 891-902
    • Tzeng, J.-Y.1    Devlin, B.2    Wasserman, L.3    Roeder, K.4
  • 13
    • 0033358667 scopus 로고    scopus 로고
    • Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping
    • McPeek MS, Strahs A (1999) Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to fine-scale genetic mapping. Am J Hum Genet 65:858-875
    • (1999) Am J Hum Genet , vol.65 , pp. 858-875
    • McPeek, M.S.1    Strahs, A.2
  • 14
    • 15544365509 scopus 로고    scopus 로고
    • Coalescent-based association mapping and fine mapping of complex trait loci
    • Zöllner S, Pritchard JK (2005) Coalescent-based association mapping and fine mapping of complex trait loci. Genetics 169:1071-1092
    • (2005) Genetics , vol.169 , pp. 1071-1092
    • Zöllner, S.1    Pritchard, J.K.2
  • 15
    • 3042591234 scopus 로고    scopus 로고
    • Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes
    • Durrant C, Zondervan KT, Cardon LR, Hunt S, Deloukas P, Morris AP (2004) Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes. Am J Hum Genet 75:35-43
    • (2004) Am J Hum Genet , vol.75 , pp. 35-43
    • Durrant, C.1    Zondervan, K.T.2    Cardon, L.R.3    Hunt, S.4    Deloukas, P.5    Morris, A.P.6
  • 16
    • 2442713792 scopus 로고    scopus 로고
    • Graphical modeling of the joint distribution of alleles at associated loci
    • Thomas A, Camp NJ (2004) Graphical modeling of the joint distribution of alleles at associated loci. Am J Hum Genet 74:1088-1101
    • (2004) Am J Hum Genet , vol.74 , pp. 1088-1101
    • Thomas, A.1    Camp, N.J.2
  • 17
    • 21344454198 scopus 로고    scopus 로고
    • Characterizing allelic associations from unphased diploid data by graphical modeling
    • Thomas A (2005) Characterizing allelic associations from unphased diploid data by graphical modeling. Genet Epidemiol 29: 23-35
    • (2005) Genet Epidemiol , vol.29 , pp. 23-35
    • Thomas, A.1
  • 18
    • 33646870441 scopus 로고    scopus 로고
    • Graphical models for association mapping in genome-wide studies
    • Verzilli C, Whittaker J, Stallard N (2005) Graphical models for association mapping in genome-wide studies. Ann Hum Genet 69: 774
    • (2005) Ann Hum Genet , vol.69 , pp. 774
    • Verzilli, C.1    Whittaker, J.2    Stallard, N.3
  • 19
    • 13844302126 scopus 로고    scopus 로고
    • High density linkage disequilibrium mapping using models of haplotype block variation
    • Greenspan G, Geiger D (2004) High density linkage disequilibrium mapping using models of haplotype block variation. Bioinformatics 20:i137-i144
    • (2004) Bioinformatics , vol.20
    • Greenspan, G.1    Geiger, D.2
  • 20
    • 0033910724 scopus 로고    scopus 로고
    • Bayesian fine-scale mapping of disease loci, by hidden Markov models
    • Morris AP, Whittaker JC, Balding DJ (2000) Bayesian fine-scale mapping of disease loci, by hidden Markov models. Am J Hum Genet 67:155-169
    • (2000) Am J Hum Genet , vol.67 , pp. 155-169
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 21
    • 0030282113 scopus 로고    scopus 로고
    • The power of amnesia: Learning probabilistic automata with variable memory length
    • Ron D, Singer Y, Tishby N (1996) The power of amnesia: learning probabilistic automata with variable memory length. Machine Learning 25:117-149
    • (1996) Machine Learning , vol.25 , pp. 117-149
    • Ron, D.1    Singer, Y.2    Tishby, N.3
  • 22
    • 2442694424 scopus 로고    scopus 로고
    • A Markov chain approach to reconstruction of long haplotypes
    • Kamuela, HI, January 6-10
    • Eronen L, Geerts F, Toivonen H (2004) A Markov chain approach to reconstruction of long haplotypes. Pacific Symposium on Biocomputing Kamuela, HI, January 6-10
    • (2004) Pacific Symposium on Biocomputing
    • Eronen, L.1    Geerts, F.2    Toivonen, H.3
  • 23
    • 0039530516 scopus 로고    scopus 로고
    • Variable length Markov chains
    • Bühlmann P, Wyner AJ (1999) Variable length Markov chains. Ann Stat 27:480-513
    • (1999) Ann Stat , vol.27 , pp. 480-513
    • Bühlmann, P.1    Wyner, A.J.2
  • 24
    • 0032049450 scopus 로고    scopus 로고
    • On the learnability and usage of acyclic probabilistic finite automata
    • Ron D, Singer Y, Tishby N (1998) On the learnability and usage of acyclic probabilistic finite automata. J Comp Syst Sci 56:133-152
    • (1998) J Comp Syst Sci , vol.56 , pp. 133-152
    • Ron, D.1    Singer, Y.2    Tishby, N.3
  • 26
    • 0035071957 scopus 로고    scopus 로고
    • A new statistical method for haplotype reconstruction from population data
    • Stephens M, Smith N, Donnelly P (2001) A new statistical method for haplotype reconstruction from population data. Am J Hum Genet 68:978-989
    • (2001) Am J Hum Genet , vol.68 , pp. 978-989
    • Stephens, M.1    Smith, N.2    Donnelly, P.3
  • 27
    • 0242691208 scopus 로고    scopus 로고
    • A comparison of Bayesian methods for haplotype reconstruction from population genotype data
    • Stephens M, Donnelly P (2003) A comparison of Bayesian methods for haplotype reconstruction from population genotype data. Am J Hum Genet 73:1162-1169
    • (2003) Am J Hum Genet , vol.73 , pp. 1162-1169
    • Stephens, M.1    Donnelly, P.2
  • 29
    • 0036338150 scopus 로고    scopus 로고
    • Merlin-rapid analysis of dense genetic maps using sparse gene flow trees
    • Abecasis GR, Cherny SS, Cookson WO, Cardon LR (2002) Merlin-rapid analysis of dense genetic maps using sparse gene flow trees. Nat Genet 30:97-101
    • (2002) Nat Genet , vol.30 , pp. 97-101
    • Abecasis, G.R.1    Cherny, S.S.2    Cookson, W.O.3    Cardon, L.R.4
  • 30
    • 1842455329 scopus 로고    scopus 로고
    • Genetics of inflammatory bowel disease: Progress and prospects
    • Mathew CG, Lewis CM (2004) Genetics of inflammatory bowel disease: progress and prospects. Hum Mol Genet 13:R161-168
    • (2004) Hum Mol Genet , vol.13
    • Mathew, C.G.1    Lewis, C.M.2
  • 32
    • 0346373654 scopus 로고    scopus 로고
    • Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium
    • Carlson CS, Eberle MA, Rieder MJ, Yi Q, Kruglyak L, Nickerson DA (2004) Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium. Am J Hum Genet 74:106-120
    • (2004) Am J Hum Genet , vol.74 , pp. 106-120
    • Carlson, C.S.1    Eberle, M.A.2    Rieder, M.J.3    Yi, Q.4    Kruglyak, L.5    Nickerson, D.A.6
  • 33
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet P, Stephens M (2006) A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am J Hum Genet 78: 629-644
    • (2006) Am J Hum Genet , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 35
    • 27644524213 scopus 로고    scopus 로고
    • Multiple testing in the context of haplotype analysis revisited: Application to case-control data
    • Becker T, Cichon S, Jönson E, Knapp M (2005) Multiple testing in the context of haplotype analysis revisited: application to case-control data. Ann Hum Genet 69:747-756
    • (2005) Ann Hum Genet , vol.69 , pp. 747-756
    • Becker, T.1    Cichon, S.2    Jönson, E.3    Knapp, M.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.