Adsorption of protein GlnB of Herbaspirillum seropedicae on Si(111) investigated by AFM and XPS

Cell Biochemistry and Biophysics

Volumn 44, Issue 3, 2006, Pages 503-511

  Lubambo, A F ^a   Benelli, E M ^a   Klein, J ^a   Schreiner, W ^a   Camargo, P C ^a  

^a FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

Author keywords

Atomic force microscopy; Filament; Herbaspirillum seropedicae; Protein adsorption; Protein interactions; Self assembly; Silicon; Solid support; Spin coat; XPS

Indexed keywords

BACTERIAL PROTEIN; NITROGEN; NITROGEN REGULATORY PROTEIN; NITROGENASE; PIID REGULATORY PROTEIN, BACTERIA; SILICON;

ADSORPTION; ATOMIC FORCE MICROSCOPY; BACTERIAL GENE; CHEMICAL MODEL; CHEMISTRY; CONFERENCE PAPER; GENE EXPRESSION REGULATION; GRAM NEGATIVE BACTERIUM; HERBASPIRILLUM; METHODOLOGY; PHYSIOLOGY; RHIZOBIACEAE; SOLUTION AND SOLUBILITY; SURFACE PROPERTY; ULTRASTRUCTURE; X RAY DIFFRACTION;

ADSORPTION; BACTERIAL PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENES, BACTERIAL; GRAM-NEGATIVE BACTERIA; HERBASPIRILLUM; MICROSCOPY, ATOMIC FORCE; MODELS, CHEMICAL; NITROGEN; NITROGENASE; PII NITROGEN REGULATORY PROTEINS; RHIZOBIACEAE; SILICON; SOLUTIONS; SURFACE PROPERTIES; X-RAY DIFFRACTION;

HERBASPIRILLUM; HERBASPIRILLUM SEROPEDICAE;

EID: 33646860755     PISSN: 10859195     EISSN: None     Source Type: Journal    
DOI: 10.1385/CBB:44:3:503     Document Type: Conference Paper

References (38)

1. Gray, J. (2004) The interaction of proteins with solid surfaces. Curr. Opin. Struct. Biol. 14, 110-115.
2. Sleytr, U. and Gyorvary, E. (2003) Crystallisation of S-Layer protein lattices on surfaces and interfaces. Prog. Org. Coating 47, 279-287.
3. Kim, H., Garavito, M., and Lal, R. (2000) Atomic force microscopy of three-dimensional crystal of membrane, OmpC porin. Colloids Surf B Biointerfaces 19, 347-355.
4. Pechkova, E. and Nicolini, C. (2004) Protein nanocrystallographie: a new approach to structural proteomics. Trends Biol. 22, 117-122.
5. Scheibel, T., Parthasarathy R., Sawicki, G., Lin, X. M., Jaeger. H., and Lindquist, S. L. (2003) Conducting nanowires built by controlled self-assembly of amyloid fibers and selective metal deposition. Proc. Natl. Acad. Sci. U.S.A. 100, 4527-4532.
6. Lowe, C. (2000) Nanobiotechnology: the fabrication and application of chemical and biological nanostructures. Curr. Opin. Struct. Biol. 10, 428-434.
7. Li, H., Perozzo, M., Konnert, J., Nadarajah, A., and Pusey M. (1999) Determining the molecular-packing arrangements on protein crystal faces by atomic force microscopy. Acta Crystallograph. D 55, 1023-1035.
8. Ninfa, A. J. and Atkinson, M. R (2000) PII signal transduction proteins. Trends Microbiol. 8, 172-179.
9. Baldani, J. I., Baldani, V. L. D., Seldin, L., and Dobereiner, J. (1986) Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int. J. Syst. Bacteriol. 36, 86-93.
10. Baldani, V. L. D., Baldani, J. I, Olivares, F., and Dobereiner, J. (1992) Identification and ecology of Herbaspirillum seropedicae and the closely related Pseudomonas rubrisubalbicans. Symbiosis 13, 65-73.
11. Pimentel, J. P., Olivares, F., Pitard, R. M., Urquiaga, S., Akiba, F., and Dobereiner, J. (1991) Dinitrogen fixation and infection of grass leaves by Pseudomonas rubrisubalbicans and Herbaspirillum seropedicae. Plant Soil 137, 61-65.
12. Weber, O. B, Baldani, V. L. D., Teixeira, K. R. S, Kirchhof, G., Baldani, I., and Doberreiner J., (1999) Isolation and characterization of diazotrophic bacteria in banana and pineapple plants. Plant Soil 210, 103-113.
13. Benelli, E. M., Souza, E. M., Funayama, S., Rigo, L. U., and Pedrosa, F. O. (1997) Evidence for two possible glnB-type genes in Herbaspirillum seropedicae. J. Bacteriol. 179, 4623-4626.
14. Souza, E. M., Pedrosa, F. O., Drummond, M. H., Rigo, L. U., and Yates, M. G. (1999) Control of Herbaspirillum seropedicae NifA activity by ammonium ions and oxygen. J. Bacteriol. 181, 681-684.
15. Binnig, G., Quate, C. F., and Gerber, C. H. (1986) Atomic force microscope. Phys. Rev. Lett. 56, 930-933.
16. Dufrène, Y. F., Marchal, T. G., and Rouxhet, P. G. (1999) Probing the organisation of adsorbed protein layers: complementarity of atomic force microscope, X-ray photoelectron spectroscopy and radiolabeling. Appl. Surf. Sci. 638, 144-145.
17. Benelli, E. M., Buck, M., DeSouza, E. M., et al. (2001) Uridylylation of the PII protein from Herbaspirilum seropedicae. Can. J. Microbiol. 47, 309-314.
18. Benelli, E.M., Buck, M., Polikarpov, I., et al. (2002) Herbaspirillum seropedicae protein PII is structurally similar to the enteric GlnK. Eur. J. Biochem. 269, 3296-3303.
19. Hirose, M., Yasaka, T., Takakura, M., et al. (1991) Initial oxidation of chemically cleaned silicon surfaces. Solid State Technol. 43-48.
20. Higashi, G. S. Chabal, Y. J., Trucks, G. W., et al. (1990) Ideal hydrogen termination of the Si(111) surface. Appl. Phys. Lett. 56, 656-658.
21. Coen, M. C., Lehmann, R., Gröning, P., et al. (2001) Adsorption and bioactivity of protein A on silicon surfaces studied by AFM and XPS. J. Colloid Interface Sci. 233, 180-189.
22. Dunbar, P. B. and Manley M. (1997) Combined flow and evaporation of fluid on a spinning disk. Phys. Fluids 9, 870-875.
23. Salditt, T. and Mennicke, U. (2002) Preparation of solid-supported lipid bilayers by spin-coating. Langmuir 18, 8172-8177.
24. Kralchevsky P. and Denkov, N. (2001) Capillary forces and structuring in layers of colloid particles. Curr. Opin. Colloid Interface Sci. 6, 383-401.
25. Tanuma, S., Powell, C. J., and Penn, D. R. (1993) Calculations of electronic inelastic mean free paths. Surf. Interface Anal. 2, 1165-1176.
26. Scofield, J. H. (1976) Hartree-Slater subshell photoionization cross-sections at 1254 and 1487 eV. J. Electron Spec. Rel. Phen. 8, 129-137.
27. Haggerty L. and Lenhoff, A. M. (1991) Ordered arrays of protein on graphite observed by STM. J. Vac. Sci. Technol. B 9, 1219-1222.
28. Mcpherson, A. and Shlichta, P. (1988) Heterogeneous and epitaxial nucleation of protein crystals on mineral surfaces. Science 239, 385-387.
29. Yeates, T. O. and Padilla, J. E. (2002) Designing supramolecular protein assemblies. Curr. Opin. Struct. Biol. 12, 464-470.
30. Adachi, E. and Nagayama, K. (1997) Assembly process of 2D protein arrays in wetting films. Adv..Biophys. 34, 81-92.
31. Denkov, N. D., Velev, O.D., Kralchevsky P. A., et al. (1992) Mechanism of formation 2D crystals from latex particles on substrates. Langmuir 8, 3183-3190.
32. Malmstein, M. (1998) Formation of adsorbed protein layers. J. Colloid Interface Sci. 207, 186-199.
33. Nagayama, K. (1996) Protein array engineering. Supramol. Sci. 3, 111-122.
34. Nagayama, K. (1996) Two-dimensional self-assembly of colloids in thin liquid films. Colloids Surfaces A 109, 363-374.
35. Nakanishi, K., Sakiyama, T., and Imamura, K. (2001) On adsorption of proteins on solid surfaces, a common but very complicated phenomenon. J. Biosci. Bioeng. 91, 233-244.
36. De Cupere, V. M., et al. (2004) Influence of substrate hydrophobicity on the adsorption of an amphiphilic diblock copolymer. Colloid Interface Sci. 271, 60-68.
37. Nefedov, V. (1988) X-Ray Photoelectron Spectroscopy of Solid Surfaces, Leiden, The Netherlands: VSP.
38. Zenhausern, F., Adrian, M., TenhegglerBordier, B., Eng, L. M., and Descouts, P. (1992) DNA and RNA-polymerase DNA complex imaged by scanning force microscopy-influence of molecular scale. Scanning 14, 212-217.