Species-specific FISH analysis of cecal microflora in rats administered with lactic acid bacteria

World Journal of Microbiology and Biotechnology

Volumn 22, Issue 5, 2006, Pages 493-499

  Sakai, Kenji ^a   Oue, Kazutoshi ^a   Umeki, Miki ^a   Mori, Masatsugu ^a   Kuribayashi, Mari ^a   Mochizuki, Satoshi ^a  

^a OITA UNIVERSITY   (Japan)

Author keywords

16S rRNA; FISH; Intestinal flora; Lactic acid bacteria; Probiotics; Rat

Indexed keywords

BACTERIOLOGY; DNA; FLUORESCENCE; GROWTH KINETICS; RNA;

16S RRNA; FISH; INTESTINAL FLORA; LACTIC ACID BACTERIA; PROBIOTICS;

CELL CULTURE;

BACTERIA (MICROORGANISMS); LACTOBACILLUS PLANTARUM; LACTOBACILLUS RHAMNOSUS; LACTOCOCCUS LACTIS;

EID: 33646589001     PISSN: 09593993     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11274-005-9062-8     Document Type: Article

References (22)

1. Alm, E., Oerther, D.B., Lasten, N., Stahl, D.A. & Raskin, L. 1996 The oligonucleotide probe database. Applied and Environmental Microbiology 10, 3557-3559.
2. Amann, R.I., Krumholz, L. & Stahl, D.A. 1990 Fluorescent- oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. Journal of Bacteriology 172, 762-770.
3. Amann, R. 1995 In situ identification of micro-organisms by whole cell hybridization with rRNA-targeted nucleic acid probes. In Molecular Microbial Ecology Manual, eds. Akkermans, A.D.L. van Elsas, J.D. & de Bruijn, F. pp 3.3.6 1-15, Dordrecht: Kluwer Academic Publishers. ISBN 0792334108.
4. Arvola, T., Laiho, K., Torkkeli, S., Mykkanen, H., Salminen, S., Maunula, L. & Isolauri, E. 1999 Prophylactic Lactobacillus GG reduces antibiotic-associated diarrhea in children with respiratory infections: a randomized study. Pediatrics 104, 64.
5. Blasco, L., Ferrer, S. & Pardo, I. 2003 Development of specific fluorescent oligonucleotide probes for in situ identification of wine lactic acid bacteria. FEMS Microbiology Letters 225, 115-123.
6. Bukowska, H., Pieczul-Mroz, J., Jastrzebska, M., Chelstowski, K. & Naruszewicz, M. 1998 Decrease in fibrinogen and LDL-cholesterol levels upon supplementation of diet with Lactobacillus plantarum in subjects with moderately elevated cholesterol. Atherosclerosis 137, 437-438.
7. Cole, J.R., Chai, T.L., Marsh, R.J., Farris, R.J., Wang, Q., Kulam, S.A., Chandra, S., McGarrell, D.M., Schmidt, T.M., Garrity, G.M. & Tiedje, J.M. 2003 The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Research 31, 442-443.
8. Fekety, R. & Shah, A.B. 1993 Diagnosis and treatment of Clostridium difficile colitis. Journal of the American Medical Association 269, 71-75.
9. Hammes, W.P., Weiss, N. & Holzapfel, W. 1992 Chapter 70: The genera Lactobacillus and Carnobacterium. In The Prokaryotes, Balows, A., Trüper, H.G., Dworkin, M., Harder, W. & Schleifer, K.H. (Eds), 2 New York, NY: Springer-Verlag, pp. 1535-1594. ISBN 0387972587.
10. Isolauri, E., Juntunen, M., Rautanen, T., Sillanaukee, P. & Koivula, T. 1991 A human Lactobacillus strain (Lactobacillus casei sp. strain GG) promotes recovery from acute diarrhea in children. Pediatrics 88, 90-97.
11. Kanauchi, O., Nakamura, T., Agata, K. & Fushiki, T. 1997 Preventive effect of germinated barley foodstuff on diarrhea induced by water-soluble dietary fiber in rats. Bioscience Biotechnology and Biochemistry 61, 449-454.
12. Lipsky, A., Friedrich, U. & Altendorf, K. 2001 Application of rRNA-targeted oligonucleotide probes in biotechnology. Applied Microbiology and Biotechnology 56, 40-57.
13. Manz, W., Amann, R., Ludwig, W., Wagner, M. & Schleifer, K.H. 1992 Phylogenetic oligonucleotide probes for the major subclass of proteobacteria: problems and solutions. Systematic and Applied Microbiology 15, 593-600.
14. Nakajima, H., Suzuki, Y., Kaizu, H. & Hirota, T. 1992 Cholesterol lowering activity of ropy fermented milk. Journal of Food Science 57, 1327-1328.
15. Ouwehand, A.C., Salminen, S. & Isolauri, E. 2002 Probiotics: an overview of beneficial effects. Antonie van Leeuwenhoek 82, 279-289.
16. Reid, G. 1999 The scientific basis for probiotic strains of Lactobacillus. Applied and Environmental Microbiology 65, 3763-3766.
17. Sakai, K., Murata, Y., Yamazumi, H., Tau, U., Mori, M., Moriguchi, M. & Shirai, Y. 2000 Selective proliferation of lactic acid bacteria and accumulation of lactic acid during open fermentation of kitchen refuse with intermittent pH adjustment. Food Science and Technology Research 6, 140-145.
18. Sakai, K., Taniguchi, M., Miura, S., Ohara, H., Matsumoto, T. & Shirai, Y. 2003 Making plastics from garbage: a novel process for poly-L-lactate production from municipal food waste. Journal of Industrial Ecology 7, 63-74.
19. Sakai, K., Mori, M., Fujii, A., Iwami, Y. & Shirai, Y. 2004 Fluorescent In situ hybridization analysis of open lactic acid fermentation of kitchen refuse using rRNA-targeted oligonucleotide probes. Journal of Bioscience and Bioengineering 98, 48-56.
20. Tanaka, K., Komiyama, A., Sonomoto, K., Ishizaki, A., Hall, S.J. & Stanbury, P.F. 2002 Two different pathways for D-xylose metabolism and the effect of xylose concentration on the yield coefficient of L-lactate in mixed-acid fermentation by the lactic acid bacterium Lactococcus lactis IO-1. Applied Microbiology and Biotechnology 60, 160-167.
21. Thompson, J.D., Higgins, D.G. & Gibson, T.J. 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673-4680.
22. Umeki, M., Oue, K., Mochizuki, S., Shirai, Y. & Sakai, K. 2004 Effect of simultaneous administration of Lactobacillus rhamnosus KY-3 and cellobiose on lipid metabolism in rats. Journal of Nutritional Science and Vitaminology 50, 330-334.