High genetic diversity and no inbreeding in the endangered copper redhorse, Moxostoma hubbsi (Catostomidae, Pisces): The positive sides of a long generation time

Molecular Ecology

Volumn 15, Issue 7, 2006, Pages 1769-1780

  Lippé, Catherine ^a   Dumont, Pierre ^b   Bernatchez, Louis ^a  

^a UNIVERSITÉ LAVAL   (Canada)

^b MINISTÈRE DES RESSOURCES NATURELLES ET DE LA FAUNE   (Canada)

Author keywords

Captive breeding programme; Catostomidae; Conservation; Generation time; Genetic diversity; Inbreeding

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ANIMAL; ARTICLE; CANADA; COMPUTER SIMULATION; CYPRINIFORMES; DNA SEQUENCE; EVOLUTION; GENETIC VARIABILITY; GENETICS; GENOTYPE; GEOGRAPHY; INBREEDING;

ALLELES; ANIMALS; COMPUTER SIMULATION; CYPRINIFORMES; EVOLUTION; GENOTYPE; GEOGRAPHY; INBREEDING; MICROSATELLITE REPEATS; QUEBEC; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

CATOSTOMIDAE; MOXOSTOMA HUBBSI; PISCES;

EID: 33646569916     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2006.02902.x     Document Type: Article

References (83)

1. Amos W Balmford A 2001 When does conservation genetics matter? Heredity 87 257 265
2. e from temporally spaced samples Genetics 156 2109 2118
3. Ballou JD Lacy RC 1995 Identifying genetically important individuals for management of genetic diversity in pedigreed populations In Population Management for Survival and Recovery: Analytical Methods and Strategies in Small Populations Conservation (eds Ballou JD Gilpin M Foose TJ pp 76 111 Columbia University Press New York
4. Bartley D Bagley M Gall G Bentley B 1992 Use of linkage disequilibrium data to estimate effective size of hatchery and natural fish populations Conservation Biology 6 365 375
5. TM pour la génétique des populations Laboratoire Génome, Populations, Interactions, CNRS UMR 5000, Université de Montpellier II Montpellier, France
6. Bernatchez L 2004 ) Considérations Génétiques et Protocole de Reproduction Relatifs au Plan de Rétablissement du Chevalier Cuivré ( Moxostoma hubbsi ) Technical Report for the du Ministère des Ressources naturelles, de la Faune et des Parcs, direction de l'aménagement de la faune de Montréal, de Laval et de la Montérégie, Longueuil et Pêches et Océans Canada Région du Québec
7. Blouin M Parsons M Lacaille V Lotz S 1996 Use of microsatellite loci to classify individuals by relatedness Molecular Ecology 5 393 401
8. Branchaud A Boulet M Pépin S Fortin R 1993 ) Essais de Reproduction Artificielle du Suceur Cuivré Entrepris au Cours de l'été 1993 Québec, Ministère du Loisir, de la Chasse et de la Pêche, Service de l'aménagement et de l'exploitation de la faune, Technical Report 06-34.
9. Branchaud A Gendron A 1993 Artificial spawning and rearing of the copper redhorse, Moxostoma hubbsi (Teleostei: Catostomidae) Canadian Field-Naturalist 107 279 282
10. Branchaud A Hatin D Cayer P Côté L Dumont P Fortin R 1995 Reproduction Artificielle et Élevage du Suceur Cuivré Québec, Ministère de l'Environnement et de la Faune, Direction régionale de Montréal, Laval, Lanaudière, Laurentides, Montérégie, Service de l'aménagement et de l'exploitation de la fauce Montréal Technical Report
11. Cambray J 2000 'Threatened fishes of the world' series, an update Environmental Biology of Fishes 59 353 357
12. Cambray J Bianco P 1998 Freshwater fish crisis: a blue planet perspective Italian Journal of Zoology 65 Suppl. 345 356
13. Campton DE 1987 Natural hybridization and introgression in fishes: methods of detection and genetic interpretations In Population Genetics and Fisheries Management (eds Ryman N Utter F pp 161 192 Washington Sea Grant Program, University of Washington Press Seattle, Washington
14. Cooke S Bunt C Hamilton S et al. 2005 Threats, conservation strategies, and prognosis for suckers (Catostomidae) in North America: insights from regional case studies of a diverse family of non-game fishes Biological Conservation 121 317 331
15. Cornuet J Luikart G 1996 Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data Genetics 144 2001 2014
16. COSEWIC in press ) COSEWIC assessment and update status report on the copper redhorse Moxostom hubbsi in Canada Committee on the Status of Endangered Wildlife in Canada Ottawa ()
17. Courtemanche M Elliott M 1985 ) Identification des os de poissons provenant du site de Mandeville (CaFg-1). In: Dactylogramme, Université du Québec à Montréal (Ostéothèque de Montréal, Inc.). Technical Report
18. Crandall K Posada D Vasco D 1999 Effective population sizes: missing measures and missing concepts Animal Conservation 2 317 319
19. Crow J Denniston C 1988 Inbreeding and variance effective population numbers Evolution 42 482 495
20. DeSalle R Amato G 2004 The expansion of conservation genetics Nature Reviews Genetics 5 702 712
21. DeWoody J Avise J 2000 Microsatellite varation in marine, freshwater and anadromous fishes compared with other animals Journal of Fish Biology 56 461 473
22. Di Rienzo A Peterson A Garza J Valdes A Slatkin M Freimer N 1994 Mutational processes of simple-sequence repeat loci in human populations Proceedings of the National Academy of Sciences, USA 91 3166 3170
23. Dieringer D Schlötterer C 2003 microsatellite analyser ( msa ): a platform independent analysis tool for large microsatellite data sets Molecular Ecology Notes 3 167 169
24. Dowling T Minckley W Marsh P 1996a Mitochondrial DNA diversity within and among populations of razorback sucker (Xyrauchen taxanus) as determined by restriction endonuclease analysis Copeia 1996 542 550
25. Dowling T Minckley W Marsh P Goldstein E 1996b Mitochondrial DNA diversity in the endangered razorback sucker (Xyrauchen texanus): analysis of hatchery stocks and implications for captive propagation Conservation Biology 10 120 127
26. Dowling T Marsh P Kelsen A Tibbets C 2005 Genetic monitoring of wild and repatriated populations of endangered razorback sucker (Xyrauchen texanus, Catostomidae, Teleostei) in Lake Mohave, Arizona-Nevada Molecular Ecology 14 123 136
27. Dumont P Leclerc J Allard J-D Paradis S 1997 Libre passage des poissons au barrage de Saint-Ours, rivière Richelieu. Québec, Ministère de l'Environnement et de la Faune, Direction régionale de la Montérégie, Service de l'aménagement et de l'exploitation de la faune et Direction des ressources matérielles et des immobilisations, Québec, et ministère du Patrimoine canadien (Parcs Canada) Technical Report
28. England P Osler G Woodworth L Montgomery M Briscoe D Frankham R 2003 Effects of intense versus diffuse population bottlenecks on microsatellite genetic diversity and evolutionary potential Conservation Genetics 4 595 604
29. Estoup A Angers B 1998 Microsatellites and minisatellites for molecular ecology: theoretical and empirical considerations In Advances in Molecular Ecology (ed Carvlho GR pp 55 86 NATO Science Series IOS Press Amsterdam
30. Estoup A Cornuet JM 1999 Microsatellite evolution: inferences from population data In Microsatellites: Evolution and Applications (eds Goldstein DB Schlöterrer C pp 49 65 Oxford University Press Oxford, UK
31. Frankham R 1995 Effective population size/adult population size ratios in wildlife - a review Genetical Research 66 95 107
32. Frankham R Ballou JD Broscoe DA 2002 Introduction to Conservation Genetics Cambridge University Press Cambridge, UK
33. Franklin IR Frankham R 1998 How large must populations be to retain evolutionary potential? Animal Conservation 1 69 73
34. Garza J Williamson E 2001 Detection of reduction in population size using data from microsatellite loci Molecular Ecology 10 305 318
35. Gerber AS Templeton AR 1996 Population sizes and within-deme movement of Trimerotropis saxatilis (Acrididae), a grasshopper with a fragmented distribution Oecologia 105 343 350
36. Goossens B Chikhi L Jalil M et al. 2005 Patterns of genetic diversity and migration in increasingly fragmented and declining orang-utan (Pongo pygmaeus) populations from Sabah, Malaysia Molecular Ecology 14 441 456
37. Guo SW Thompson EA 1992 Performing the exact test of Hardy-Weinberg proportion for multiple alleles Biometrics 48 361 372
38. Hagelberg E 1994 Mitochondrial DNA from ancient bones In Ancient DNA: Recovery and Analysis of Genetic Material from Paleontological, Archaeological, Museum, Medical and Forensic Specimens (eds Herrmann B Hummel S pp 195 205 Springer Verlag New York
39. Hauser L Adcock G Smith P Bernal Ramirez J Carvalho G 2002 Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus) Proceedings of the National Academy of Sciences, USA 99 11742 11747
40. Hedrick PW Kalinowski ST 2000 Inbreeding depression in conservation biology Annual Review in Ecology and Systematics 31 139 162
41. Herrmann RG Hummel S 1994 Ancient DNA: Recovery and analysis of genetic material from paleantological, archaeological, museum, medical and forensic specimens. Springer Verlag New York NY
42. Hill W 1981 Estimation of effective population size from data on linkage disequilibrium Genetical Research 38 209 216
43. Hoelzel A 1999 Impact of population bottlenecks on genetic variation and the importance of life-history; a case study of the northern elephant seal Biological Journal of the Linnean Society 68 23 39
44. Jarne P Lagoda PJL 1996 Microsatellites: from molecules to populations and back Trends in Ecology & Evolution 11 424 429
45. Johnson JA Bellinger MR Toepfer JE Dunn P 2004 Temporal changes in allele frequencies and low effective population size in greater prairie-chickens Molecular Ecology 13 2617 2630
46. Knaepkens G Bervoets L Verheyen E Eens M 2004 Relationship between population size and genetic diversity in endangered populations of the European bullhead (Cottus gobio): implications for conservation Biological Conservation 115 403 410
47. Kuo C Janzen F 2003 bottlesim: a bottleneck simulation program for long-lived species with overlapping generations Molecular Ecology Notes 3 669 673
48. Kuo C Janzen F 2004 Genetic effects of a persistent bottleneck on a natural population of ornate box turtles (Terrapene ornata) Conservation Genetics 5 425 437
49. Lippé C Dumont P Bernatchez L 2004 Isolation and identification of 21 microsatellite loci in the copper redhorse (Moxostoma hubbsi; Catostomidae) and their variability in other catostomids Molecular Biology Notes 4 638 641
50. Mace GM Lande R 1991 Assessing extinction threats: toward a reevaluation of IUCN threatened species categories Conservation Biology 5 148 157
51. Minckley W Marsh P Deacon J et al. 2003 A conservation plan for native fishes of the lower Colorado River Bioscience 53 219 234
52. Mongeau J-R Dumont P Cloutier L 1986 ) La biologie du suceur cuivré, Moxostoma hubbsi, une espèce rare et endémique à la région de Montréal, Québec, Canada. Ministere du Loisir, de la Chasse et de la Pêche, Service de l'aménagement et de l'exploitation de la faune, Montréal, Technical Report 06-39
53. Mongeau J-R Dumont P Cloutier L 1992 La biologie du Suceur cuivré (Moxostoma hubbsi) comparée à celle de quatre autres espèces de Moxostoma (M. anisurum, M. carinatum, M. macrolepidotum et M. valenciennesi) Canadian Journal of Zoology 70 1354 1363
54. Nei M Tajima F 1981 Genetic drift and estimation of effective population size Genetics 98 625 640
55. Nielsen E Hansen M Loeschcke V 1997 Analysis of microsatellite DNA from old scale samples of Atlantic salmon Salmo salar: a comparison of genetic composition over 60 years Molecular Ecology 6 487 492
56. Nunney L Campbell KA 1993 Assessing viable population size: demography meets population genetics Trends in Ecology & Evolution 8 234 239
57. Ohta T Kimura M 1973 A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population Genetic Research 22 201 204
58. Olsen JB Wenburg JK Bentzen P 1996 Semiautomated multilocus genotyping of Pacific salmon (Oncorhynchus spp.) using microsatellites Molecular Marine Biology and Biotechnology 5 259 272
59. Pastor T Garza JC Allen P Amos W Aguilar A 2004 Low genetic variability in the highly endangered Mediterranean monk seal Journal of Heredity 95 291 300
60. Peel D Ovenden JR Peel SL 2004 N e E stimator: Software for estimating effective population size (version 1.3) Queensland Government, Department of Primary Industries and Fisheries Brisbane
61. Piry S Luikart G Cornuet J 1999 bottleneck: a computer program for detecting recent reductions in the effective population size using allele frequency data Journal of Heredity 90 502 503
62. Pritchard J Stephens M Donnelly P 2000 Inference of population structure using multilocus genotype data Genetics 155 945 959
63. Queller D Goodnight K 1989 Estimating relatedness using genetic markers Evolution 43 258 275
64. Raymond M Rousset F 1995 An exact test for population differentiation Evolution 49 1280 1283
65. Ricciardi A Rasmussen J 1999 Extinction rates of North American freshwater fauna Conservation Biology 13 1220 1222
66. Rice W 1989 Analyzing tables of statistical tests Evolution 43 223 225
67. Schwartz M Tallmon D Luikart G 1999 Using genetics to estimate the size of wild populations: many methods, much potential, uncertain utility Animal Conservation 2 321 323
68. Spencer CC Neigel JE Leberg PL 2000 Experimental evaluation of the usefulness of microsatellite DNA for detecting demographic bottlenecks Molecular Ecology 9 1517 1528
69. Tallmon D Luikart G Waples R 2004a The alluring simplicity and complex reality of genetic rescue Trends in Ecology & Evolution 19 489 496
70. Tallmon D Luikart G Beaumont M 2004b Comparative evaluation of a new effective population size estimator based on approximate Bayesian computation Genetics 167 977 988
71. Templeton AR Read B 1994 Inbreeding: one word, several meanings, much confusion In Conservation Genetics (eds Loeschcke V Tomiuk J Jain SK pp 91 105 Birkhauser Basel, Switzerland
72. Tranah G Agresti J May B 2001 New microsatellite loci for suckers (Catostomidae): primer homology in Catostomus, Chasmistes, and Deltistes Molecular Ecology Notes 1 55 60
73. Vachon N 2002 ) Variations interannuelles de l'abondance des chevaliers 0+ dans le secteur Saint-Marc de la rivière Richelieu de 1997 à 2001 avec une attention particulière portée au chevalier cuivré (Moxostoma hubbsi). Longueuil, Société de la faune et des parcs du Québec. Technical Report
74. Vachon N Chagnon Y 2004 ) Caractérisation des populations de chevaliers cuivré (Moxostoma hubbsi) du fleuve Saint-Laurent (secteur Lavaltrie-Contrecoeur) à partir des captures fortuites d'un pêcheur commercial en 1999, 2000 et 2001. Longueuil, Ministère des ressources naturelles, de la faune et des parcs du Québec, Technical Report 16-16
75. Wang J 2001 A pseudo-likelihood method for estimating effective population size from temporally spaced samples Genetical Research 78 243 257
76. Waples RS 1989 A generalized approach for estimating effective population size from temporal changes in allele frequency Genetics 121 379 391
77. Waples RS Teel D 1990 Conservation genetics of Pacific salmon I. Temporal changes in allele frequency Conservation Biology 4 144 156
78. Waples RS 1991 Genetic methods for estimating the effective size of cetacean populations In Genetic Ecology of Whales and Dolphins Special Issue 13 (ed Hoelzel AR ), pp 279 300 International Whale Commission London
79. Waples RS 2005 Genetic estimates of contemporary effective population size: to what time periods do the estimates apply Molecular Ecology 14 3335 3352
80. Waples RS Johnson OW Aebersold PB et al. 1993 A Genetic Monitoring and Evaluation Program for Supplemented Populations of Salmon and Steelhead in the Snake River Basin Annual Report of Research to Bonneville Power Administration Portland, Oregon
81. Weber DS Stewart BS Lehman N 2004 Genetic consequences of a severe bottleneck in the Guadalupe fur seal (Arctocephalus townsendi) Journal of Heredity 95 144 153
82. Weir B Cockerham C 1984 Estimating F-statistics for the analysis of population structure Evolution 38 1358 1370
83. Westemeier R Brawn J Simpson S et al. 1998 Tracking the long-term decline and recovery of an isolated population Science 282 1695 1698