BOTTLESIM: A bottleneck simulation program for long-lived species with overlapping generations

Molecular Ecology Notes

Volumn 3, Issue 4, 2003, Pages 669-673

  Kuo, C H ^a,b   Janzen, F J ^a  

^a IOWA STATE UNIVERSITY   (United States)

^b University of Georgia ^*  (United States)

Author keywords

Computer simulation; Conservation genetics; Genetic diversity; Heterozygosity; Long lived species; Population bottleneck

Indexed keywords

EID: 0345099345     PISSN: 14718278     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1471-8286.2003.00532.x     Document Type: Article

References (20)

1. Allendorf FW (1986) Genetic drift and the loss of alleles versus heterozygosity. Zoo Biology, 5, 181-190.
2. Ballou JD, Gilpin M, Foose TJ (1994) Population Management for Survival and Recovery. Columbia University Press, New York.
3. Balloux F (2001) EASYPOP (version 1.7): a computer program for population genetics simulations. Journal of Heredity, 92, 301-302.
4. Birnbaum K, Benfey PN, Peters CM, Desalle R (2002) MANAGEDPOP: a computer simulation to project allelic diversity in managed populations with overlapping generations. Molecular Ecology Notes, 2, 615-617.
5. Crow JF, Kimura M (1970) An Introduction to Population Genetics Theory. Harper & Row, New York.
6. Denniston C (1977) Small population size and genetic diversity implications for endangered species. In: Endangered Birds: Management Techniques for Preserving Threatened Species (ed. Temple SA), pp. 281-290. The University of Wisconsin Press, Madison.
7. England PR, Osler GH (2001) GENELOSS: a computer program for simulating the effects of population bottlenecks on genetic diversity. Molecular Ecology Notes, 1, 111-113.
8. Frankel OH, Soule ME (1981) Conservation and Evolution. Cambridge University Press, Cambridge.
9. Friar EA, Ladoux T, Roalson EH, Robichaux RH (2000) Microsatellite analysis of a population crash and bottleneck in the Mauna Kea silversword, Argyroxiphium sandwicense ssp. sandwicense (Asteraceae), and its implications for reintroduction. Molecular Ecology, 9, 2027-2034.
10. Hill WG (1972) Effective size of populations with overlapping generations. Theoretical Population Biology, 3, 278-289.
11. Lande R (1994) Risk of population extinction from fixation of new deleterious mutations. Evolution, 48, 1460-1469.
12. Lande R (1995) Breeding plans for small populations based on the dynamics of quantitative genetic variance. In: Population Management for Survival and Recovery (eds Ballou JD, Gilpin M, Foose TJ), pp. 318-335. Columbia University Press, New York.
13. Lynch M, Conery J, Burger J (1995) Mutation accumulation and the extinction of small populations. American Naturalist, 146, 489-518.
14. Mills SL, Smouse PE (1994) Demographic consequences of inbreeding in remnant populations. American Naturalist, 144, 412-431.
15. Motro U, Thomson G (1982) On heterozygosity and the effective size of populations subject to size changes. Evolution, 36, 1059-1066.
16. Nei M, Marayuma T, Chakraborty R (1975) The bottleneck effect and genetic variability in populations. Evolution, 29, 1-10.
17. Raymond M, Rousset F (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity, 86, 248-249.
18. Strand AE (2002) METASIM 1.0: an individual-based environment for simulating population genetics of complex population dynamics. Molecular Ecology Notes, 2, 373-376.
19. Watterson GA (1984) Allele frequencies after a bottleneck. Theoretical Population Biology, 26, 387-407.
20. Wright S (1969) Evolution and the Genetics of Populations, 2: the Theory of Gene Frequencies. University of Chicago Press, Chicago.