Annular arrangement and collaborative actions of four domains of protein-disulfide isomerase: A small angle x-ray scattering study in solution

Journal of Biological Chemistry

Volumn 281, Issue 10, 2006, Pages 6581-6588

  Li, Sheng Jian ^a,c   Hong, Xin Guo ^b   Shi, Yuan Yuan ^a,c   Li, Hui ^a   Wang, Chih Chen ^a  

^a INSTITUTE OF BIOPHYSICS   (China)

^b INSTITUTE OF HIGH ENERGY PHYSICS   (China)

^c UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ATOMIC FORCE MICROSCOPY; CHROMATOGRAPHY; MATHEMATICAL MODELS; MOLECULAR BIOLOGY; PROTEINS; SOLUTIONS; X RAY SCATTERING;

ANALYTICAL ULTRACENTRIFUGATION; ELLIPTICAL CYLINDERS; MOLECULAR MASS; PROTEIN-DISULFIDE ISOMERASE (PDI);

ENZYME KINETICS;

CHAPERONE; DIMER; MONOMER; PROTEIN DISULFIDE ISOMERASE; THIOREDOXIN;

AB INITIO CALCULATION; ARTICLE; ATOMIC FORCE MICROSCOPY; CARBOXY TERMINAL SEQUENCE; ENZYME ANALYSIS; ENZYME STRUCTURE; GEL PERMEATION CHROMATOGRAPHY; MOLECULAR WEIGHT; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN FUNCTION; ULTRACENTRIFUGATION; X RAY CRYSTALLOGRAPHY; CHEMICAL STRUCTURE; CHEMISTRY; HUMAN; KINETICS; METABOLISM; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PROTEIN TERTIARY STRUCTURE; RADIATION SCATTERING; SOLUTION AND SOLUBILITY; X RAY;

CRYSTALLOGRAPHY, X-RAY; HUMANS; KINETICS; MAGNETIC RESONANCE SPECTROSCOPY; MICROSCOPY, ATOMIC FORCE; MODELS, MOLECULAR; MOLECULAR CHAPERONES; PROTEIN DISULFIDE-ISOMERASE; PROTEIN STRUCTURE, TERTIARY; SCATTERING, RADIATION; SOLUTIONS; X-RAYS;

EID: 33646546083     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M508422200     Document Type: Article

References (54)

1. Freedman, R. B., Klappa, P., and Ruddock, L. W. (2002) EMBO Rep. 3, 136-140
2. Ellgaard, L., and Ruddock, L. W. (2005) EMBO Rep. 6, 28-32
3. Cai, H., Wang, C. C., and Tsou, C. L. (1994) J. Biol. Chem. 269, 24550-24552
4. Puig, A., and Gilbert, H. F. (1994) J. Biol. Chem. 269, 7764-7771
5. Yao, Y., Zhou, Y. C., and Wang, C. C. (1997) EMBO J. 16, 651-658
6. Tsai, B., Rodighiero, C., Lencer, W. I., and Rapoport, T. A. (2001) Cell 104, 937-948
7. McLaughlin, S. H., and Bulleid, N. J. (1998) Biochem. J. 331, 793-800
8. Pihlajaniemi, T., Helaakoski, T., Tasanen, K., Myllyla, R., Huhtala, M.-L., Koivu, J., and Kivirriko, K. I. (1987) EMBO J. 6, 643-649
9. Wetterau, J. R., Combs, K. A., Spinner, S. N., and Joiner, B. J. (1990) J. Biol. Chem. 265, 9801-9807
10. Koivunen, P., Pirneskoski, A., Karvonen, P., Ljung, J., Helaakoski, T., Notbohm, H., and Kivirikko, K. I. (1999) EMBO J. 18, 65-74
11. Edman, J. C., Ellis, L., Blacher, R. W., Roth, R. A., and Rutter, W. J. (1985) Nature 317, 267-270
12. Freedman, R. B., Hirst, T. R., and Tuite, M. F. (1994) Trends Biochem. Sci. 19, 331-336
13. Darby, N. J., Kemmink, J., and Creighton, T. E. (1996) Biochemistry 35, 10517-10528
14. Kemmink, J., Darby, J., Dijkstra, K., Nilges M., and Creighton, T. E. (1997) Curr. Biol. 7, 239-245
15. Kemmink, J., Darby, N. J., Dijkstra, K., Nilges, M., and Creighton, T. E. (1996) Biochemistry 35, 7684-7691
16. Pirneskoski, A., Klappa, P., Lobell, M., Williamson, R. A., Byrne, L., Alanen, H. I., Salo, K. E., Kivirikko, K. I., Freedman, R. B., and Ruddock, L. W. (2004) J. Biol. Chem. 279, 10374-10381
17. Ohba, H., Harano, T., and Omura, T. (1981) J. Biochem. (Tokyo) 89, 889-900
18. Tojo, H., Asano, T., Kato, K., Udaka, S., Horiuchi, R., and Kahinuma, A. (1994) J. Biotechnol. 33, 55-62
19. Solovyov, A., and Gilbert, H. F. (2004) Protein Sci. 13, 1902-1907
20. Hawkins, H. C., de Nardi, M., and Freedman, R. B. (1991) Biochem. J. 275, 341-348
21. Darby, N. J., Penka, E., and Vincentelli, R. (1998) J. Mol. Biol. 276, 239-247
22. Sun, X. X., Dai, Y., Liu, H. P., Chen, S. M., and Wang, C. C. (2000) Biochim. Biophys. Acta 1481, 45-54
23. Svergun, D. I., Volkov, V. V., Kozin, M. B., and Stuhrmann, H. B. (1996) Acta Crystallogr. Sect. A 52, 419-426
24. Chacon, P., Moran, F., Diaz, J. F., Pantos, E., and Andreu, J. M. (1998) Biophys. J. 74, 2760-2775
25. Svergun, D. I. (1999) Biophys. J. 76, 2879-2886
26. Svergun, D. I., Petoukhov, M. V., and Koch, M. H. J. (2001) Biophys. J. 80, 2946-2953
27. Bradford, M. M. (1976) Anal. Biochem. 72, 248-254
28. Ellman, G. L. (1959) Arch. Biochem. Biophys. 82, 70-77
29. Ueki, T., Hiragi, Y., Kataoka, M., Inoko, Y., Amemiya, Y., Izumi, Y., Tagawa, H., and Muroga, Y. (1985) Biophys. Chem. 23, 115-124
30. Guinier, A. G., and Fournet, G. (1955) Small Angle Scattering X-rays, pp. 24-28 and 126-133, John Wiley & Sons, Inc., New York
31. Porod, G. (1982) in Small Angle X-ray Scattering (Glatter, O., and Kratky, O., eds) pp. 17-51, Academic Press, London
32. Izumi, Y., Kuwamoto, S., Jinbo, Y., and Yoshino, H. (2001) FEBS Lett. 495, 126-130
33. Schuck, P. (2000) Biophys. J. 78, 1606-1619
34. Kemmink, J., Dijkstra, K., Mariani, M., Scheek, R. M., Penka, E., Nilges, M., and Darby, N. J. (1999) J. Biomol. NMR 13, 357-368
35. Kozin, M. B., and Svergun, D. I. (2001) J. Appl. Crystallogr. 34, 33-41
36. Volkov, V. V., and Svergun, D. I. (2003) J. Appl. Crystallogr. 36, 860-864
37. Keller, D. (1991) Surf. Sci. 253, 353-364
38. Noiva, R. (1999) Semin. Cell Dev. Biol. 10, 481-493
39. Puig, A., Primm, T. P., Surendran, R., Lee, J. C., Ballard, K. D., Orkiszewski, R. S., Makarov, V., and Gilbert, H. F. (1997) J. Biol. Chem. 272, 32988-32994
40. Choi, J. Y., Sung, Y. M., Park, H. J., Hur, E. H., Lee, S. J., Hahn, C., Min, B. R., Kim, I. K., Kang, S., and Rhim, H. (2002) Biotechnol. Appl. Biochem. 36, 33-40
41. Nielsen, M. S., Vorum, H., Lindersson, E., and Jensen, P. H. (2001) J. Biol. Chem. 276, 22680-22684
42. Chandra, S., Chen, X., Rizo, J., Jahn, R., and Sudhof, T. C. (2003) J. Biol. Chem. 278, 15313-15318
43. Pirneskoski, A., Ruddock, L. W., Klappa, P., Freedman, R. B., Kivirikko, K. I., and Koivunen, P. (2001) J. Biol. Chem. 276, 11287-11293
44. Koivunen, P., Salo, K. E., Myllyharju, J., and Ruddock, L. W. (2005) J. Biol. Chem. 280, 5227-5235
45. Klappa, P., Ruddock, L. W., Darby, N. J., and Freedman, R. B. (1998) EMBO J. 17, 927-935
46. Darby, N. J., and Creighton, T. E. (1995) Biochemistry 34, 11725-11735
47. McCarthy, A. A., Haebel, P. W., Torronen, A., Rybin, V., Baker, E. N., and Metcalf, P. (2000) Nat. Struct. Biol. 7, 196-199
48. Martin, S. L., Branciforte, D., Keller, D., and Bain, D. L. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 13815-13820
49. Fleming, K. G., Hohl, T. M., Yu, R. C., Muller, S. A., Wolpensinger, B., Engel, A., Engelhardt, H., Brunger, A. T., Sollner, T. H., and Hanson, P. I. (1998) J. Biol. Chem. 273, 15675-15681
50. Lebowitz, J., Lewis, M. S., and Schuck, P. (2002) Protein Sci. 11, 2067-2079
51. Jones, D. T. (1999) J. Mol. Biol. 292, 195-202
52. Pan, X. M. (2001) Proteins 43, 256-259
53. Huang, C., Ren, G., Zhou, H., and Wang, C. C. (2005) Protein Expression Purif. 42, 173-177
54. Sanchez-Puig, N., Veprintsev, D. B., and Fersht, A. R. (2005) Protein Sci. 14, 1410-1418