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Volumn 1763, Issue 4, 2006, Pages 345-355

Systematic search for the rate constants that control the exocytotic process from chromaffin cells by a Genetic Algorithm

Author keywords

Chromaffin cell; Exocytosis; Genetic Algorithm (GA); Kinetic analysis; Rate constant; Synaptic protein

Indexed keywords

CALCIUM;

EID: 33646536377     PISSN: 01674889     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbamcr.2006.02.011     Document Type: Article
Times cited : (7)

References (46)
  • 1
    • 0029420271 scopus 로고
    • Presynaptic proteins involved in exocytosis in Drosophila melanogaster: a genetic analysis
    • Littleton J.T., and Bellen H.J. Presynaptic proteins involved in exocytosis in Drosophila melanogaster: a genetic analysis. Invertebr. Neurosci. 1 (1995) 3-13
    • (1995) Invertebr. Neurosci. , vol.1 , pp. 3-13
    • Littleton, J.T.1    Bellen, H.J.2
  • 2
    • 0033029043 scopus 로고    scopus 로고
    • Genetics of synaptic vesicle function: toward the complete functional anatomy of an organelle
    • Fernandez-Chacon R., and Sudhof T.C. Genetics of synaptic vesicle function: toward the complete functional anatomy of an organelle. Annu. Rev. Physiol. 61 (1999) 753-776
    • (1999) Annu. Rev. Physiol. , vol.61 , pp. 753-776
    • Fernandez-Chacon, R.1    Sudhof, T.C.2
  • 3
    • 0032836484 scopus 로고    scopus 로고
    • Membrane fusion and exocytosis
    • Jahn R., and Sudhof T.C. Membrane fusion and exocytosis. Annu. Rev. Biochem. 68 (1999) 863-911
    • (1999) Annu. Rev. Biochem. , vol.68 , pp. 863-911
    • Jahn, R.1    Sudhof, T.C.2
  • 4
    • 0033637985 scopus 로고    scopus 로고
    • The synaptic vesicle cycle revisited
    • Sudhof T.C. The synaptic vesicle cycle revisited. Neuron 28 (2000) 317-320
    • (2000) Neuron , vol.28 , pp. 317-320
    • Sudhof, T.C.1
  • 5
    • 0037174660 scopus 로고    scopus 로고
    • Emerging roles of presynaptic proteins in Ca++ triggered exocytosis
    • Rettig J., and Neher E. Emerging roles of presynaptic proteins in Ca++ triggered exocytosis. Science 298 (2002) 781-785
    • (2002) Science , vol.298 , pp. 781-785
    • Rettig, J.1    Neher, E.2
  • 6
    • 0036801359 scopus 로고    scopus 로고
    • The synaptic vesicle cycle: exocytosis and endocytosis in Drosophila and C. elegans
    • Richmond J., and Broadie K. The synaptic vesicle cycle: exocytosis and endocytosis in Drosophila and C. elegans. Curr. Opin. Neurobiol. 12 (2002) 499-507
    • (2002) Curr. Opin. Neurobiol. , vol.12 , pp. 499-507
    • Richmond, J.1    Broadie, K.2
  • 8
    • 5444228457 scopus 로고    scopus 로고
    • A new platform to study the molecular mechanisms of exocytosis
    • Mezer A., Gutman M., Nachliel E., and Ashery U. A new platform to study the molecular mechanisms of exocytosis. J. Neurosci. 24 (2004) 8838-8846
    • (2004) J. Neurosci. , vol.24 , pp. 8838-8846
    • Mezer, A.1    Gutman, M.2    Nachliel, E.3    Ashery, U.4
  • 10
    • 0034868132 scopus 로고    scopus 로고
    • Genetic Algorithm in chemometrics and chemistry: a review
    • Leardi R. Genetic Algorithm in chemometrics and chemistry: a review. J. Chemom. 15 (2001) 559-569
    • (2001) J. Chemom. , vol.15 , pp. 559-569
    • Leardi, R.1
  • 11
    • 0343877215 scopus 로고    scopus 로고
    • Skill-based interpretation of noisy probe signals enhanced with a genetic algorithm
    • Filipic B., Zun I., and Perpar M. Skill-based interpretation of noisy probe signals enhanced with a genetic algorithm. Int. J. Human-Comput. Stud. 53 (2000) 517-535
    • (2000) Int. J. Human-Comput. Stud. , vol.53 , pp. 517-535
    • Filipic, B.1    Zun, I.2    Perpar, M.3
  • 12
    • 0242718582 scopus 로고    scopus 로고
    • The kinetic evolutionary modeling of complex systems of chemical reactions
    • Hongqing C., Jingxian Y., Lishan K., Yuping C., and Yongyan C. The kinetic evolutionary modeling of complex systems of chemical reactions. Comput. Chem. 23 (1999) 143-151
    • (1999) Comput. Chem. , vol.23 , pp. 143-151
    • Hongqing, C.1    Jingxian, Y.2    Lishan, K.3    Yuping, C.4    Yongyan, C.5
  • 13
    • 33646529305 scopus 로고    scopus 로고
    • C. Houck, J. Joines, M.A. Kay, Genetic algorithm for function optimization: A Matlab implementation NCSU-IE TR (1995) 95-09.
  • 14
    • 0032204616 scopus 로고    scopus 로고
    • Heuristic search algorithms for the determination of rate constants and reaction mechanisms from limited concentration data
    • Terry D.B., and Messina M. Heuristic search algorithms for the determination of rate constants and reaction mechanisms from limited concentration data. J. Chem. Inf. Comput. Sci. 38 (1998) 1232-1238
    • (1998) J. Chem. Inf. Comput. Sci. , vol.38 , pp. 1232-1238
    • Terry, D.B.1    Messina, M.2
  • 15
    • 0003335096 scopus 로고    scopus 로고
    • Study of proton transfer processes in solutions using the laser induced pH jump: a new experimental setup and an improved data analysis based on genetic algoriths
    • Viappiani C., Bonetti G., Carelli M., Ferrati F., and Sternieni A. Study of proton transfer processes in solutions using the laser induced pH jump: a new experimental setup and an improved data analysis based on genetic algoriths. Rev. Sci. Instrum. 69 (1998) 270-276
    • (1998) Rev. Sci. Instrum. , vol.69 , pp. 270-276
    • Viappiani, C.1    Bonetti, G.2    Carelli, M.3    Ferrati, F.4    Sternieni, A.5
  • 16
    • 3042858789 scopus 로고    scopus 로고
    • Determination of a unique solution to parallel proton transfer reactions using the genetic algorithm
    • Moscovitch D., Noivirt O., Mezer A., Nachliel E., Mark T., Gutman M., and Fibich G. Determination of a unique solution to parallel proton transfer reactions using the genetic algorithm. Biophys. J. 87 (2004) 47-57
    • (2004) Biophys. J. , vol.87 , pp. 47-57
    • Moscovitch, D.1    Noivirt, O.2    Mezer, A.3    Nachliel, E.4    Mark, T.5    Gutman, M.6    Fibich, G.7
  • 17
    • 1542320073 scopus 로고    scopus 로고
    • A transient interaction of SNAP-25 and syntaxin nucleates SNARE assembly
    • Fasshauer D., and Margittai M. A transient interaction of SNAP-25 and syntaxin nucleates SNARE assembly. J. Biol. Chem. 297 (2004) 7613-7621
    • (2004) J. Biol. Chem. , vol.297 , pp. 7613-7621
    • Fasshauer, D.1    Margittai, M.2
  • 18
    • 0035341309 scopus 로고    scopus 로고
    • SNAREs are concentrated in cholesterol-dependent clusters that define docking and fusion sites for exocytosis
    • Lang T., Bruns D., Wenzel D., Riedel D., Holroyd P., Thiele C., and Jahn R. SNAREs are concentrated in cholesterol-dependent clusters that define docking and fusion sites for exocytosis. EMBO J. 20 (2001) 2202-2213
    • (2001) EMBO J. , vol.20 , pp. 2202-2213
    • Lang, T.1    Bruns, D.2    Wenzel, D.3    Riedel, D.4    Holroyd, P.5    Thiele, C.6    Jahn, R.7
  • 19
    • 0347683439 scopus 로고    scopus 로고
    • High affinity interaction of syntaxin and SNAP-25 on the plasma membrane is abolished by botulinum toxin E
    • Rickman C., Meunier F.A., Binz T., and Davletov B. High affinity interaction of syntaxin and SNAP-25 on the plasma membrane is abolished by botulinum toxin E. J. Biol. Chem. 279 (2004) 644-651
    • (2004) J. Biol. Chem. , vol.279 , pp. 644-651
    • Rickman, C.1    Meunier, F.A.2    Binz, T.3    Davletov, B.4
  • 20
    • 3543096759 scopus 로고    scopus 로고
    • Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution
    • Sutton R.B., Fasshauer D., Jahn R., and Brunger A.T. Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 A resolution. Nature 395 (1998) 347-353
    • (1998) Nature , vol.395 , pp. 347-353
    • Sutton, R.B.1    Fasshauer, D.2    Jahn, R.3    Brunger, A.T.4
  • 22
    • 0036680512 scopus 로고    scopus 로고
    • Sealed with a twist: complexin and the synaptic SNARE complex
    • Marz K.E., and Hanson P.I. Sealed with a twist: complexin and the synaptic SNARE complex. Trends Neurosci. 25 (2002) 381-383
    • (2002) Trends Neurosci. , vol.25 , pp. 381-383
    • Marz, K.E.1    Hanson, P.I.2
  • 24
    • 0037040873 scopus 로고    scopus 로고
    • Rapid and selective binding to the synaptic SNARE complex suggests a modulatory role of complexins in neuroexocytosis
    • Pabst S., Margittai M., Vainius D., Langen R., Jahn R., and Fasshauer D. Rapid and selective binding to the synaptic SNARE complex suggests a modulatory role of complexins in neuroexocytosis. J. Biol. Chem. 277 (2002) 7838-7848
    • (2002) J. Biol. Chem. , vol.277 , pp. 7838-7848
    • Pabst, S.1    Margittai, M.2    Vainius, D.3    Langen, R.4    Jahn, R.5    Fasshauer, D.6
  • 26
    • 0141563427 scopus 로고    scopus 로고
    • Examining synaptotagmin 1 function in dense core vesicle exocytosis under direct control of Ca2+
    • Sorensen J.B., Fernandez-Chacon R., Sudhof T.C., and Neher E. Examining synaptotagmin 1 function in dense core vesicle exocytosis under direct control of Ca2+. J. Gen. Physiol. 122 (2003) 265-276
    • (2003) J. Gen. Physiol. , vol.122 , pp. 265-276
    • Sorensen, J.B.1    Fernandez-Chacon, R.2    Sudhof, T.C.3    Neher, E.4
  • 28
    • 0033166461 scopus 로고    scopus 로고
    • Mechanisms underlying phasic and sustained secretion in chromaffin cells from mouse adrenal slices
    • Voets T., Neher E., and Moser T. Mechanisms underlying phasic and sustained secretion in chromaffin cells from mouse adrenal slices. Neuron 23 (1999) 607-615
    • (1999) Neuron , vol.23 , pp. 607-615
    • Voets, T.1    Neher, E.2    Moser, T.3
  • 29
    • 0033622509 scopus 로고    scopus 로고
    • Dissection of three Ca2+-dependent steps leading to secretion in chromaffin cells from mouse adrenal slices
    • Voets T. Dissection of three Ca2+-dependent steps leading to secretion in chromaffin cells from mouse adrenal slices. Neuron 28 (2000) 537-545
    • (2000) Neuron , vol.28 , pp. 537-545
    • Voets, T.1
  • 30
    • 0032553543 scopus 로고    scopus 로고
    • Retinal targets for calmodulin include proteins implicated in synaptic transmission
    • Xu X.Z., Wes P.D., Chen H., Li H.S., Yu M., Morgan S., Liu Y., and Montell C. Retinal targets for calmodulin include proteins implicated in synaptic transmission. J. Biol. Chem. 273 (1998) 31297-31307
    • (1998) J. Biol. Chem. , vol.273 , pp. 31297-31307
    • Xu, X.Z.1    Wes, P.D.2    Chen, H.3    Li, H.S.4    Yu, M.5    Morgan, S.6    Liu, Y.7    Montell, C.8
  • 32
    • 0028791349 scopus 로고
    • Mammalian homologues of Caenorhabditis elegans unc-13 gene define novel family of C2-domain proteins
    • Brose N., Hofmann K., Hata Y., and Sudhof T.C. Mammalian homologues of Caenorhabditis elegans unc-13 gene define novel family of C2-domain proteins. J. Biol. Chem. 270 (1995) 25273-25280
    • (1995) J. Biol. Chem. , vol.270 , pp. 25273-25280
    • Brose, N.1    Hofmann, K.2    Hata, Y.3    Sudhof, T.C.4
  • 34
    • 33644681150 scopus 로고    scopus 로고
    • Multiple kinetic components of exocytosis distinguished by neurotoxin sensitivity
    • Xu T., Binz T., Niemann H., and Neher E. Multiple kinetic components of exocytosis distinguished by neurotoxin sensitivity. Nat. Neurosci. 1 (1998) 192-200
    • (1998) Nat. Neurosci. , vol.1 , pp. 192-200
    • Xu, T.1    Binz, T.2    Niemann, H.3    Neher, E.4
  • 35
    • 0000308038 scopus 로고    scopus 로고
    • Time resolved dynamics of proton transfer in proteinous systems
    • Gutman M., and Nachliel E. Time resolved dynamics of proton transfer in proteinous systems. Annu. Rev. Phys. Chem. 48 (1997) 329-356
    • (1997) Annu. Rev. Phys. Chem. , vol.48 , pp. 329-356
    • Gutman, M.1    Nachliel, E.2
  • 37
    • 0027772671 scopus 로고
    • A Ca-dependent early step in the release of catecholamines from adrenal chromaffin cells
    • von Ruden L., and Neher E. A Ca-dependent early step in the release of catecholamines from adrenal chromaffin cells. Science 262 (1993) 1061-1065
    • (1993) Science , vol.262 , pp. 1061-1065
    • von Ruden, L.1    Neher, E.2
  • 38
    • 0030797355 scopus 로고    scopus 로고
    • Robustness in simple biochemical networks
    • Barkai N., and Leibler S. Robustness in simple biochemical networks. Nature 387 (1997) 317-913
    • (1997) Nature , vol.387 , pp. 317-913
    • Barkai, N.1    Leibler, S.2
  • 39
    • 0034710645 scopus 로고    scopus 로고
    • Intracellular calcium dependence of transmitter release rates at a fast central synapse
    • Schneggenburger R., and Neher E. Intracellular calcium dependence of transmitter release rates at a fast central synapse. Nature 406 (2000) 889-893
    • (2000) Nature , vol.406 , pp. 889-893
    • Schneggenburger, R.1    Neher, E.2
  • 40
    • 23944453323 scopus 로고    scopus 로고
    • Brevity of the Ca2+ microdomain and active zone geometry prevent Ca2+-sensor saturation for neurotransmitter release
    • Shahrezaei V., and Delaney K.R. Brevity of the Ca2+ microdomain and active zone geometry prevent Ca2+-sensor saturation for neurotransmitter release. J. Neurophysiol. 94 (2005) 1912-1919
    • (2005) J. Neurophysiol. , vol.94 , pp. 1912-1919
    • Shahrezaei, V.1    Delaney, K.R.2
  • 41
    • 0034946048 scopus 로고    scopus 로고
    • Three SNARE complexes cooperate to mediate membrane fusion
    • Hua Y., and Scheller R.H. Three SNARE complexes cooperate to mediate membrane fusion. Proc. Natl. Acad. Sci. U. S. A. 98 (2001) 8065-8070
    • (2001) Proc. Natl. Acad. Sci. U. S. A. , vol.98 , pp. 8065-8070
    • Hua, Y.1    Scheller, R.H.2
  • 42
    • 1842429864 scopus 로고    scopus 로고
    • Transmembrane segments of syntaxin line the fusion pore of Ca2+-triggered exocytosis
    • Han X., Wang C.T., Bai J., Chapman E.R., and Jackson M.B. Transmembrane segments of syntaxin line the fusion pore of Ca2+-triggered exocytosis. Science 304 (2004) 289-292
    • (2004) Science , vol.304 , pp. 289-292
    • Han, X.1    Wang, C.T.2    Bai, J.3    Chapman, E.R.4    Jackson, M.B.5
  • 45
    • 0345166865 scopus 로고    scopus 로고
    • Single-molecule studies of SNARE complex assembly reveal parallel and antiparallel configurations
    • Weninger K., Bowen M.E., Chu S., and Brunger A.T. Single-molecule studies of SNARE complex assembly reveal parallel and antiparallel configurations. Proc. Natl. Acad. Sci. U. S. A. 100 25 (2003 (Dec 9)) 14800-14805
    • (2003) Proc. Natl. Acad. Sci. U. S. A. , vol.100 , Issue.25 , pp. 14800-14805
    • Weninger, K.1    Bowen, M.E.2    Chu, S.3    Brunger, A.T.4
  • 46
    • 3543025090 scopus 로고    scopus 로고
    • Syntaxin/munc18 interactions in the late events during vesicle fusion and release in exocytosis
    • Graham E.M., Barclay J.R., and Burgoyne R.D. Syntaxin/munc18 interactions in the late events during vesicle fusion and release in exocytosis. J. Biol. Chem. 279 (2004) 32751-32760
    • (2004) J. Biol. Chem. , vol.279 , pp. 32751-32760
    • Graham, E.M.1    Barclay, J.R.2    Burgoyne, R.D.3


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