A genetic perspective on the geographic association of taxa among arid North American lizards of the Sceloporus magister complex (Squamata: Iguanidae: Phrynosomatinae)

Molecular Phylogenetics and Evolution

Volumn 39, Issue 3, 2006, Pages 873-880

  Schulte II, James A ^a   Macey, J Robert ^b,c   Papenfuss, Theodore J ^c  

^a SMITHSONIAN INSTITUTION   (United States)

^b LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; CLASSIFICATION; GENETICS; GEOGRAPHY; LIZARD; PHYLOGENY;

ANIMALS; GEOGRAPHY; LIZARDS; PHYLOGENY;

IGUANIDAE; ORTHOBUNYAVIRUS; PHRYNOSOMATINAE; SATOR ANGUSTUS; SCELOPORUS; SCELOPORUS GRAMMICUS; SCELOPORUS LINEATULUS; SCELOPORUS MAGISTER; SCELOPORUS ZOSTEROMUS; SQUAMATA; UROSAURUS GRACIOSUS;

EID: 33646511719     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2005.04.033     Document Type: Article

References (44)

1. Anderson S., Bankier A.T., Barrell B.G., de Bruijn M.H.L., Coulson A.R., Drouin J., Eperon I.C., Nierlich D.P., Roe B.A., Sanger F., Schreier P.H., Smith A.J.H., Staden R., and Young I.G. Sequence and organization of the human mitochondrial genome. Nature 290 (1981) 457-465
2. Bremer K. Branch support and tree stability. Cladistics 10 (1994) 295-304
3. de Queiroz K. The general lineage concept of species, species criteria, and the process of speciation: a conceptual unification and terminological recommendations. In: Howard D.J., and Berlocher S.H. (Eds). Endless forms: species and speciation (1998), Oxford University Press, Oxford, England 57-75
4. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
5. Felsenstein J. Confidence limits on phylogenies with a molecular clock. Syst. Zool. 34 (1985) 152-161
6. Ferrari L. Miocene shearing along the northern boundary of the Jalisco block and the opening of the southern Gulf of California. Geology 23 (1995) 751-754
7. Goldman N., Anderson J.P., and Rodrigo A.G. Likelihood-based tests of topologies in phylogenetics. Syst. Biol. 49 (2000) 652-670
8. Grismer L.L., and McGuire J.A. Taxonomy and biogeography of the Sceloporus magister complex (Squamata: Phynosomatidae) in Baja California, Mexico. Herpetologica 52 (1996) 416-427
9. Hall, W.P., 1973. Comparative population cytogenetics, speciation, and evolution of the crevice-using species of Sceloporus (Sauria, Iguanidae). Ph.D. Dissertation, Harvard Univ., Cambridge, MA.
10. Hallowell E. Description of new reptiles from California. Proc. Acad. Nat. Sci. Phil. 7 (1854) 91-97
11. Harmon L.J., Schulte II J.A., Losos J.B., and Larson A. Tempo and mode of evolutionary radiation in iguanian lizards. Science 301 (2003) 961-964
12. Kumazawa Y., and Nishida M. Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics. J. Mol. Evol. 37 (1993) 380-398
13. Leaché A.D., and Reeder T.W. Molecular systematics of the eastern fence lizard (Sceloporus undulatus): a comparison of parsimony, likelihood, and Bayesian approaches. Syst. Biol. 51 (2002) 44-68
14. Linsdale J.M. Amphibians and reptiles from lower California. Univ. Calif. Publ. Zool. 38 (1932) 345-386
15. Macey J.R., and Verma A. Homology in phylogenetic analysis: alignment of transfer RNA genes and the phylogenetic position of snakes. Mol. Phylogenet. Evol. 7 (1997) 272-279
16. Macey J.R., Larson A., Ananjeva N.B., Fang Z., and Papenfuss T.J. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Mol. Biol. Evol. 14 (1997) 91-104
17. Macey J.R., Schulte II J.A., Larson A., Fang Z., Wang Y., Tuniyev B.S., and Papenfuss T.J. Phylogenetic relationships of toads in the Bufo bufo species group from the eastern escarpment of the Tibetan Plateau: A case of vicariance and dispersal. Mol. Phylogenet. Evol. 9 (1998) 80-87
18. Macey J.R., Schulte II J.A., Ananjeva N.B., Larson A., Rastegar-Pouyani N., Shammakov S.M., and Papenfuss T.J. Phylogenetic relationships among agamid lizards of the Laudakia caucasia species group: testing hypotheses of biogeographic fragmentation and an area cladogram for the Iranian Plateau. Mol. Phylogenet. Evol. 10 (1998) 118-131
19. Macey J.R., Schulte II J.A., Larson A., Ananjeva N.B., Tuniyev B.S., Orlov N., and Papenfuss T.J. Molecular phylogenetics, tRNA evolution, and historical biogeography in anguid lizards and related taxonomic families. Mol. Phylogenet. Evol. 12 (1999) 250-272
20. Maddison, W.P., Maddison, D.R., 2003. MacClade, analysis of phylogeny and character evolution, version 4.0. Sinauer Associates, Sunderland, MA.
21. Maniatis T., Fritsch E.F., and Sambrook J. Molecular cloning: a laboratory manual (1982), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York
22. Murphy R.W. Paleobiogeography and genetic differentiation of the Baja California herpetofauna. Occ. Pap. Calif. Acad. Sci. 137 (1983) 1-48
23. Muse S.V., and Weir B.S. Testing for equality of evolutionary rates. Genetics 132 (1992) 269-276
24. Papenfuss T.P., Macey J.R., and Schulte II J.A. A new species of lizard (genus Xantusia) from Arizona. Sci. Papers Univ. Kansas Nat. Hist. Mus. 23 (2001) 1-9
25. Parker W.S. Sceloprous magister. Cat. Am. Amph. Rept. 290 (1982) 1-4
26. Phelan R.L., and Brattstrom B.H. Geographic variation in Sceloporus magister. Herpetologica 11 (1955) 1-14
27. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
28. Posada D., and Crandall K.A. Selecting the best-fit model of nucleotide substitution. Syst. Biol. 50 (2001) 580-601
29. Puorto G., Da Graça Salomão M., Theakston R.D.G., Thorpe R.S., Warrell D.A., and Wüster W. Combining mitochondrial DNA sequences and morphological data to infer species boundaries: phylogeography of lanceheaded pitvipers in the Brazilian Atlantic forest, and the status of Bothrops pradoi (Squamata: Serpentes: Viperidae). J. Evol. Biol. 14 (2001) 527-538
30. Riddle B.R., Hafner D.J., and Alexander L.F. Phylogeography and systematics of the Peromyscus eremicus species group and the historical biogeography of North American warm regional deserts. Mol. Phylogenet. Evol. 17 (2000) 145-160
31. Schulte II J.A., Macey J.R., Larson A., and Papenfuss T.J. Molecular tests of phylogenetic taxonomies: a general procedure and example using four subfamilies of the lizard family Iguanidae. Mol. Phylogenet. Evol. 10 (1998) 367-376
32. Schulte II J.A., Valladares J.P., and Larson A. Phylogenetic relationships within Iguanidae inferred using molecular and morphological data and a phylogenetic taxonomy of iguanian lizards. Herpetologica 59 (2003) 399-419
33. Sedlock, R.L., 2003. Geology and tectonics of the Baja California Peninsula and adjacent areas. In: Johnson, S.E., Paterson, S.R., Fletcher, J.M., Girty, G.H., Kimbrough, D.L., Martin-Barajas, A., (Eds.), Tectonic evolution of northwestern México and the southwestern USA. Geological Society of America Special Paper 374, Boulder, Colorado, pp. 1-42.
34. Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 13 (1999) 964-969
35. Sorenson, M.D., 1999. TreeRot, Version 2. Boston Univ., Boston, MA.
36. Smith H.M., and Taylor E.H. Type localities of Mexican reptiles and amphibians. Univ. Kansas Sci. Bull. 33 (1950) 313-380
37. Stebbins R.C. A field guide to western reptiles and amphibians (1985), Houghton Mifflin Company, Boston, MA
38. Swofford, D.L., 2002. PAUP*. Phylogenetic analysis using parsimony (* and other methods), v. 4.0b10. Sinauer Associates, Sunderland, MA.
39. Tanner W.W. A new Sceloporus magister from eastern Utah. Great Basin Nat. 15 (1955) 32-34
40. Templeton A.R. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37 (1983) 221-244
41. Townsend T., and Larson A. Molecular phylogenetics and mitochondrial genomic evolution in the Chamaeleonidae (Reptilia, Squamata). Mol. Phylogenet. Evol. 23 (2002) 22-36
42. Weisrock D.W., Macey J.R., Ugurtas I.H., Larson A., and Papenfuss T.J. Molecular phylogenetics and historical biogeography among salamandrids of the "true" salamander clade: rapid branching of numerous highly divergent lineages in Mertensiella luschani associated with the rise of Anatolia. Mol. Phylogenet. Evol. 18 (2001) 434-448
43. Wiens J.J., and Penkrot T.A. Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Syst. Biol. 51 (2002) 69-91
44. Zhang D.-X., and Hewitt G.M. Nuclear integrations: challenges for mitochondrial DNA markers. Trends Ecol. Evol. 11 (1996) 247-251