-
1
-
-
3543012707
-
Crystallography & NMR system: a software suite for macromolecular structure determination
-
Brunger A.T., Adams P.D., Clore G.M., Delano W.L., Gros P., Grosse-Kunstleve R., Jiang W., Kuszewski J., Nilges M., Pannu N.S., et al. Crystallography & NMR system: a software suite for macromolecular structure determination. Acta Crystallogr. D Biol. Crystallogr. 54 (1998) 905-921
-
(1998)
Acta Crystallogr. D Biol. Crystallogr.
, vol.54
, pp. 905-921
-
-
Brunger, A.T.1
Adams, P.D.2
Clore, G.M.3
Delano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.6
Jiang, W.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
3
-
-
0032518398
-
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution
-
Doublie S., Tabor S., Long A.M., Richardson C.C., and Ellenberger T. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 Å resolution. Nature 391 (1998) 251-258
-
(1998)
Nature
, vol.391
, pp. 251-258
-
-
Doublie, S.1
Tabor, S.2
Long, A.M.3
Richardson, C.C.4
Ellenberger, T.5
-
5
-
-
0035807870
-
Targeting of human DNA polymerase ι to the replication machinery via interaction with PCNA
-
Haracska L., Johnson R.E., Unk I., Phillips B.B., Hurwitz J., Prakash L., and Prakash S. Targeting of human DNA polymerase ι to the replication machinery via interaction with PCNA. Proc. Natl. Acad. Sci. USA 98 (2001) 14256-14261
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14256-14261
-
-
Haracska, L.1
Johnson, R.E.2
Unk, I.3
Phillips, B.B.4
Hurwitz, J.5
Prakash, L.6
Prakash, S.7
-
6
-
-
0014219653
-
Nucleoside conformations: an analysis of steric barriers to rotation about the glycosidic bond
-
Haschemeyer A.E., and Rich A. Nucleoside conformations: an analysis of steric barriers to rotation about the glycosidic bond. J. Mol. Biol. 27 (1967) 369-384
-
(1967)
J. Mol. Biol.
, vol.27
, pp. 369-384
-
-
Haschemeyer, A.E.1
Rich, A.2
-
7
-
-
0033538470
-
hRAD30 mutations in the variant form of xeroderma pigmentosum
-
Johnson R.E., Kondratick C.M., Prakash S., and Prakash L. hRAD30 mutations in the variant form of xeroderma pigmentosum. Science 285 (1999) 263-265
-
(1999)
Science
, vol.285
, pp. 263-265
-
-
Johnson, R.E.1
Kondratick, C.M.2
Prakash, S.3
Prakash, L.4
-
8
-
-
0033548231
-
Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase, Polη
-
Johnson R.E., Prakash S., and Prakash L. Efficient bypass of a thymine-thymine dimer by yeast DNA polymerase, Polη. Science 283 (1999) 1001-1004
-
(1999)
Science
, vol.283
, pp. 1001-1004
-
-
Johnson, R.E.1
Prakash, S.2
Prakash, L.3
-
9
-
-
0034738983
-
Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions
-
Johnson R.E., Washington M.T., Haracska L., Prakash S., and Prakash L. Eukaryotic polymerases ι and ζ act sequentially to bypass DNA lesions. Nature 406 (2000) 1015-1019
-
(2000)
Nature
, vol.406
, pp. 1015-1019
-
-
Johnson, R.E.1
Washington, M.T.2
Haracska, L.3
Prakash, S.4
Prakash, L.5
-
11
-
-
0345269987
-
Deoxynucleotide triphosphate binding mode conserved in Y family DNA polymerases
-
Johnson R.E., Trincao J., Aggarwal A.K., Prakash S., and Prakash L. Deoxynucleotide triphosphate binding mode conserved in Y family DNA polymerases. Mol. Cell. Biol. 23 (2003) 3008-3012
-
(2003)
Mol. Cell. Biol.
, vol.23
, pp. 3008-3012
-
-
Johnson, R.E.1
Trincao, J.2
Aggarwal, A.K.3
Prakash, S.4
Prakash, L.5
-
12
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones A.T., Zou J.Y., Cowan S.W., and Kjeldgaard M. Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A 47 (1991) 110-119
-
(1991)
Acta Crystallogr. A
, vol.47
, pp. 110-119
-
-
Jones, A.T.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
13
-
-
8544278025
-
DNA polymerase fidelity: kinetics, structure, and checkpoints
-
Joyce C.M., and Benkovic S.J. DNA polymerase fidelity: kinetics, structure, and checkpoints. Biochemistry 43 (2004) 14317-14324
-
(2004)
Biochemistry
, vol.43
, pp. 14317-14324
-
-
Joyce, C.M.1
Benkovic, S.J.2
-
15
-
-
0032535528
-
Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation
-
Li Y., Korolev S., and Waksman G. Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J. 17 (1998) 7514-7525
-
(1998)
EMBO J.
, vol.17
, pp. 7514-7525
-
-
Li, Y.1
Korolev, S.2
Waksman, G.3
-
16
-
-
0033578040
-
The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η
-
Masutani C., Kusumoto R., Yamada A., Dohmae N., Yokoi M., Yuasa M., Araki M., Iwai S., Takio K., and Hanaoka F. The XPV (xeroderma pigmentosum variant) gene encodes human DNA polymerase η. Nature 399 (1999) 700-704
-
(1999)
Nature
, vol.399
, pp. 700-704
-
-
Masutani, C.1
Kusumoto, R.2
Yamada, A.3
Dohmae, N.4
Yokoi, M.5
Yuasa, M.6
Araki, M.7
Iwai, S.8
Takio, K.9
Hanaoka, F.10
-
18
-
-
3142674288
-
Replication by human DNA polymerase-ι occurs by Hoogsteen base-pairing
-
Nair D.T., Johnson R.E., Prakash S., Prakash L., and Aggarwal A.K. Replication by human DNA polymerase-ι occurs by Hoogsteen base-pairing. Nature 430 (2004) 377-380
-
(2004)
Nature
, vol.430
, pp. 377-380
-
-
Nair, D.T.1
Johnson, R.E.2
Prakash, S.3
Prakash, L.4
Aggarwal, A.K.5
-
19
-
-
26444528004
-
Human DNA polymerase ι incorporates dCTP opposite template G via a G.C+ Hoogsteen base pair
-
Nair D.T., Johnson R.E., Prakash L., Prakash S., and Aggarwal A.K. Human DNA polymerase ι incorporates dCTP opposite template G via a G.C+ Hoogsteen base pair. Structure (Camb) 13 (2005) 1569-1577
-
(2005)
Structure (Camb)
, vol.13
, pp. 1569-1577
-
-
Nair, D.T.1
Johnson, R.E.2
Prakash, L.3
Prakash, S.4
Aggarwal, A.K.5
-
20
-
-
84920325457
-
AMoRe: an automated package for molecular replacement
-
Navaza J. AMoRe: an automated package for molecular replacement. Acta Crystallogr. 50 (1994) 157-163
-
(1994)
Acta Crystallogr.
, vol.50
, pp. 157-163
-
-
Navaza, J.1
-
21
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Otwinowski Z., and Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276 (1997) 307-326
-
(1997)
Methods Enzymol.
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
22
-
-
21244506437
-
Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function
-
Prakash S., Johnson R.E., and Prakash L. Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function. Annu. Rev. Biochem. 74 (2005) 317-353
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 317-353
-
-
Prakash, S.1
Johnson, R.E.2
Prakash, L.3
-
24
-
-
0033581011
-
DNA polymerases: structural diversity and common mechanisms
-
Steitz T.A. DNA polymerases: structural diversity and common mechanisms. J. Biol. Chem. 274 (1999) 17395-17398
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 17395-17398
-
-
Steitz, T.A.1
-
25
-
-
0034214838
-
polι, a remarkably error-prone human DNA polymerase
-
Tissier A., McDonald J.P., Frank E.G., and Woodgate R. polι, a remarkably error-prone human DNA polymerase. Genes Dev. 14 (2000) 1642-1650
-
(2000)
Genes Dev.
, vol.14
, pp. 1642-1650
-
-
Tissier, A.1
McDonald, J.P.2
Frank, E.G.3
Woodgate, R.4
-
26
-
-
0034724287
-
Accuracy of thymine-thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase η
-
Washington M.T., Johnson R.E., Prakash S., and Prakash L. Accuracy of thymine-thymine dimer bypass by Saccharomyces cerevisiae DNA polymerase η. Proc. Natl. Acad. Sci. USA 97 (2000) 3094-3099
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 3094-3099
-
-
Washington, M.T.1
Johnson, R.E.2
Prakash, S.3
Prakash, L.4
-
27
-
-
0142123120
-
Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase η
-
Washington M.T., Prakash L., and Prakash S. Mechanism of nucleotide incorporation opposite a thymine-thymine dimer by yeast DNA polymerase η. Proc. Natl. Acad. Sci. USA 100 (2003) 12093-12098
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12093-12098
-
-
Washington, M.T.1
Prakash, L.2
Prakash, S.3
-
28
-
-
0347986655
-
Human DNA polymerase ι utilizes different nucleotide incorporation mechanisms dependent upon the template base
-
Washington M.T., Johnson R.E., Prakash L., and Prakash S. Human DNA polymerase ι utilizes different nucleotide incorporation mechanisms dependent upon the template base. Mol. Cell. Biol. 24 (2004) 936-943
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 936-943
-
-
Washington, M.T.1
Johnson, R.E.2
Prakash, L.3
Prakash, S.4
-
29
-
-
2942753954
-
Efficient and error-free replication past a minor-groove DNA adduct by the sequential action of human DNA polymerases ι and κ
-
Washington M.T., Minko I.G., Johnson R.E., Wolfle W.T., Harris T.M., Lloyd R.S., Prakash S., and Prakash L. Efficient and error-free replication past a minor-groove DNA adduct by the sequential action of human DNA polymerases ι and κ. Mol. Cell. Biol. 24 (2004) 5687-5693
-
(2004)
Mol. Cell. Biol.
, vol.24
, pp. 5687-5693
-
-
Washington, M.T.1
Minko, I.G.2
Johnson, R.E.3
Wolfle, W.T.4
Harris, T.M.5
Lloyd, R.S.6
Prakash, S.7
Prakash, L.8
-
30
-
-
0013461295
-
Macromolecular TLS refinement in REFMAC at moderate resolutions
-
Winn M.D., Murshudov G.N., and Papiz M.Z. Macromolecular TLS refinement in REFMAC at moderate resolutions. Methods Enzymol. 374 (2003) 300-321
-
(2003)
Methods Enzymol.
, vol.374
, pp. 300-321
-
-
Winn, M.D.1
Murshudov, G.N.2
Papiz, M.Z.3
-
31
-
-
25444516751
-
Human DNA polymerase ι promotes replication through a ring-closed minor-groove adduct that adopts a syn conformation in DNA
-
Wolfle W.T., Johnson R.E., Minko I.G., Lloyd R.S., Prakash S., and Prakash L. Human DNA polymerase ι promotes replication through a ring-closed minor-groove adduct that adopts a syn conformation in DNA. Mol. Cell. Biol. 25 (2005) 8748-8754
-
(2005)
Mol. Cell. Biol.
, vol.25
, pp. 8748-8754
-
-
Wolfle, W.T.1
Johnson, R.E.2
Minko, I.G.3
Lloyd, R.S.4
Prakash, S.5
Prakash, L.6
-
32
-
-
0033830464
-
Preferential incorporation of G opposite template T by the low-fidelity human DNA polymerase ι
-
Zhang Y., Yuan F., Wu X., and Wang Z. Preferential incorporation of G opposite template T by the low-fidelity human DNA polymerase ι. Mol. Cell. Biol. 20 (2000) 7099-7108
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 7099-7108
-
-
Zhang, Y.1
Yuan, F.2
Wu, X.3
Wang, Z.4
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