Selenium is involved in regulation of periplasmic hydrogenase gene expression in Desulfovibrio vulgaris Hildenborough

Journal of Bacteriology

Volumn 188, Issue 9, 2006, Pages 3228-3235

  Valente, Filipa M A ^a   Almeida, Cláudia C ^a   Pacheco, Isabel ^a   Carita, João ^a   Saraiva, Lígia M ^a   Pereira, Inês A C ^a  

^a INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGENASE; IRON DERIVATIVE; NICKEL; SELENIUM;

ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; CONTROLLED STUDY; CULTURE MEDIUM; CYTOPLASM; DESULFOVIBRIO DESULFURICANS; DESULFOVIBRIO VULGARIS HILDENBOROUGH; ELECTRON TRANSPORT; ENERGY METABOLISM; ENERGY RESOURCE; ENZYME SYNTHESIS; GENE EXPRESSION REGULATION; NONHUMAN; OXIDATION; PRIORITY JOURNAL; SULFATE REDUCING BACTERIUM;

BACTERIAL PROTEINS; CULTURE MEDIA; DESULFOVIBRIO VULGARIS; GENE EXPRESSION REGULATION, BACTERIAL; HYDROGEN; HYDROGENASE; OXIDATION-REDUCTION; PERIPLASMIC PROTEINS; SELENIUM;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO DESULFURICANS; DESULFOVIBRIO VULGARIS SUBSP. VULGARIS STR. HILDENBOROUGH;

EID: 33646260195     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/JB.188.9.3228-3235.2006     Document Type: Article

References (39)

1. Afting, C., E. Kremmer, C. Brucker, A. Hochheimer, and R. K. Thauer. 2000. Regulation of the synthesis of H-2-forming methylenetetrahydromethanopterin dehydrogenase (Hmd) and of HmdII and HmdIII in Methanothermobacter marburgensis. Arch. Microbiol. 174:225-232.
2. Andrews, S. C., A. K. Robinson, and F. Rodriguez-Quinones. 2003. Bacterial iron homeostasis. FEMS Microbiol. Rev. 27:215-237.
3. Axley, M. J., A. Böck, and T. C. Stadtman. 1991. Catalytic properties of an Escherichia coli formate dehydrogenase mutant in which sulfur replaces selenium. Proc. Nat. Acad. Sci. USA 88:8450-8454.
4. Berghofer, Y., K. Agha-Amiri, and A. Klein. 1994. Selenium is involved in the negative regulation of the expression of selenium-free [NiFe] hydrogenases in Methanococcus voltae. Mol. Gen. Genet. 242:369-373.
5. Birringer, M., S. Pilawa, and L. Flohé. 2002. Trends in selenium biochemistry. Nat. Prod. Rep. 19:693-718.
6. Böck, A. 2000. Biosynthesis of selenoproteins-an overview. Biofactors 11:77-78.
7. Casalot, L., and M. Rousset. 2001. Maturation of the [NiFe] hydrogenases. Trends Microbiol. 9:228-237.
8. Chuang, S. E., D. L. Daniels, and F. R. Blattner. 1993. Global regulation of gene expression in Escherichia coli. J. Bacteriol. 175:2026-2036.
9. Fauque, G., H. D. Peck, Jr., J. J. Moura, B. H. Huynh, Y. Berlier, D. V. DerVartanian, M. Teixeira, A. E. Przybyla, P. A. Lespinat, I. Moura, and J. LeGall. 1988. The three classes of hydrogenases from sulfate-reducing bacteria of the genus Desulfovibrio. FEMS Microbiol. Rev. 4:299-344.
10. Fournier, M., Z. Dermoun, M. C. Durand, and A. Dolla. 2004. A new function of the Desulfovibrio vulgaris Hildenborough [Fe] hydrogenase in the protection against oxidative stress. J. Biol. Chem. 279:1787-1793.
11. Garcin, E., X. Vernede, E. C. Hatchikian, A. Volbeda, M. Frey, and J. C. Fontecilla-Camps. 1999. The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center. Structure 7:557-566.
12. Hantke, K. 2001. Iron and metal regulation in bacteria. Curr. Opin. Microbiol. 4:172-177.
13. Heidelberg, J. F., R. Seshadri, S. A. Haveman, C. L. Hemme, I. T. Paulsen, J. F. Kolonay, J. A. Eisen, N. Ward, B. Methe, L. M. Brinkac, S. C. Daugherty, R. T. Deboy, R. J. Dodson, A. S. Durkin, R. Madupu, W. C. Nelson, S. A. Sullivan, D. Fouts, D. H. Haft, J. Selengut, J. D. Peterson, T. M. Davidsen, N. Zafar, L. W. Zhou, D. Radune, G. Dimitrov, M. Hance, K. Tran, H. Khouri, J. Gill, T. R. Utterback, T. V. Feldblyum, J. D. Wall, G. Voordouw, and C. M. Fraser. 2004. The genome sequence of the anaerobic, sulfate-reducing bacterium Desulfovibrio vulgaris Hildenborough. Nat. Biotechnol. 22:554-559.
14. Huynh, B. H., M. H. Czechowski, H. J. Kruger, D. V. DerVartanian, H. D. Peck, Jr., and J. LeGall. 1984. Desulfovibrio vulgaris hydrogenase: a nonheme iron enzyme lacking nickel that exhibits anomalous EPR and Mossbauer spectra. Proc. Natl. Acad. Sci. USA 81:3728-3732.
15. Kryukov, G. V., and V. N. Gladyshev. 2004. The prokaryotic selenoproteome. EMBO Rep. 5:538-543.
16. Lee, S. R., S. Bar-Noy, J. Kwon, R. L. Levine, T. C. Stadtman, and S. G. Rhee. 2000. Mammalian thioredoxin reductase: oxidation of the C-terminal cysteine/selenocysteine active site forms a thioselenide, and replacement of selenium with sulfur markedly reduces catalytic activity. Proc. Natl. Acad. Sci. USA 97:2521-2526.
17. Matias, P. M., I. A. C. Pereira, C. M. Soares, and M. A. Carrondo. 2005. Sulphate respiration from hydrogen in Desulfovibrio bacteria: a structural biology overview. Prog. Biophys. Mol. Biol. 89:292-329.
18. Muller, S., and A. Klein. 2001. Coordinate positive regulation of genes encoding [NiFe] hydrogenases in Methanococcus voltae. Mol. Genet. Genomics 265:1069-1075.
19. Mulrooney, S. B., and R. P. Hausinger. 2003. Nickel uptake and utilization by microorganisms. FEMS Microbiol. Rev. 27:239-261.
20. Noll, I., S. Muller, and A. Klein. 1999. Transcriptional regulation of genes encoding the selenium-free [NiFe]-hydrogenases in the archaeon Methanococcus voltae involves positive and negative control elements. Genetics 152:1335-1341.
21. Odom, J. M., and H. D. Peck, Jr. 1981. Hydrogen cycling as a general mechanism for energy coupling in the sulfate-reducing bacteria, Desulfovibrio sp. FEMS Microbiol. Lett. 12:47-50.
22. Olson, J. W., C. L. Fu, and R. J. Maier. 1997. The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase. Mol. Microbiol. 24:119-128.
23. Peck, H. D., Jr., and H. Gest. 1956. A new procedure for assay of bacterial hydrogenases. J. Bacteriol. 71:70-80.
24. Pereira, A. S., P. Tavares, I. Moura, J. J. G. Moura, and B. H. Huynh. 2001. Mossbauer characterization of the iron-sulfur clusters in Desulfovibrio vulgaris hydrogenase. J. Am. Chem. Soc. 123:2771-2782.
25. Pereira, I. A. C., C. V. Romão, A. V. Xavier, J. LeGall, and M. Teixeira. 1998. Electron transfer between hydrogenases and mono and multiheme cytochromes in Desulfovibrio spp. J. Biol. Inorg. Chem. 3:494-498.
26. Pohorelic, B. K., J. K. Voordouw, E. Lojou, A. Dolla, J. Harder, and G. Voordouw. 2002. Effects of deletion of genes encoding Fe-only hydrogenase of Desulfovibrio vulgaris Hildenborough on hydrogen and lactate metabolism. J. Bacteriol. 184:679-686.
27. Postgate, J. R. 1984. The sulphate-reducing bacteria. University Press, Cambridge, United Kingdom.
28. Rodionov, D. A., I. Dubchak, A. Arkin, E. Aim, and M. S. Gelfand. 2004. Reconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteria. Gen. Biol. 5:R90.
29. Romao, C. V., I. A. Pereira, A. V. Xavier, J. LeGall, and M. Teixeira. 1997. Characterization of the [NiFe] hydrogenase from the sulfate reducer Desulfovibrio vulgaris Hildenborough. Biochem. Biophys. Res. Commun. 240:75-79.
30. Rother, M., I. Mathes, F. Lottspeich, and A. Böck. 2003. Inactivation of the selB gene in Methanococcus maripaludis: effect on synthesis of selenoproteins and their sulfur-containing homologs. J. Bacteriol. 185:107-114.
31. Rother, M., A. Resch, R. Wilting, and A. Böck. 2001. Selenoprotein synthesis in archaea. Biofactors 14:75-83.
32. Rowe, J. L., G. L. Starnes, and P. T. Chivers. 2005. Complex transcriptional control links NikABCDE-dependent nickel transport with hydrogenase expression in Escherichia coli. J. Bacteriol. 187:6317-6323.
33. Sorgenfrei, O., S. Muller, M. Pfeiffer, I. Sniezko, and A. Klein. 1997. The [NiFe] hydrogenases of Methanococcus voltae: genes, enzymes and regulation. Arch. Microbiol. 167:189-195.
34. Stojanowic, A., G. J. Mander, E. C. Duin, and R. Hedderich. 2003. Physiological role of the F-420-non-reducing hydrogenase (Mvh) from Methanothermobacter marburgensis. Arch. Microbiol. 180:194-203.
35. Sun, J., and A. Klein. 2004. A lysR-type regulator is involved in the negative regulation of genes encoding selenium-free hydrogenases in the archaeon Methanococcus voltae. Mol. Microbiol. 52:563-571.
36. Valente, F. M. A., A. S. F. Oliveira, N. Gnadt, I. Pacheco, A. V. Coelho, A. V. Xavier, M. Teixeira, C. M. Soares, and I. A. C. Pereira. 2005. Hydrogenases in Desulfovibrio vulgaris Hildenborough: structural and physiologic characterisation of the membrane-bound [NiFeSe] hydrogenase. J. Biol. Inorg. Chem. 10:667-682.
37. van Haaster, D. J., P. L. Hagedoorn, J. A. Jongejan, and W. R. Hagen. 2005. On the relationship between affinity for molecular hydrogen and the physiological directionality of hydrogenases. Biochem. Soc. Trans. 33:12-14.
38. Vignais, P. M., and A. Colbeau. 2004. Molecular biology of microbial hydrogenases. Curr. Issues Mol. Biol. 6:159-188.
39. Voordouw, G., V. Niviere, F. G. Ferris, P. M. Fedorak, and D. W. S. Westlake. 1990. Distribution of hydrogenase genes in Desulfovibrio spp. and their use in identification of species from the oil field environment. Appl. Environ. Microbiol. 56:3748-3754.