Maturation of the [NiFe] hydrogenases

Trends in Microbiology

Volumn 9, Issue 5, 2001, Pages 228-237

  Casalot, Laurence ^a   Rousset, Marc ^b  

^a UNIVERSITY OF MISSOURI   (United States)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

CARBAMOYL PHOSPHATE; CARBON MONOXIDE; CHAPERONE; GUANOSINE TRIPHOSPHATE; HYDROGENASE; LIGAND;

AMINO TERMINAL SEQUENCE; CHEMICAL STRUCTURE; ENZYME METABOLISM; ENZYME STRUCTURE; GENE MUTATION; HYDROLYSIS; NONHUMAN; OPERON; PHENOTYPE; PRIORITY JOURNAL; PROTEIN PROCESSING; REVIEW; STRUCTURAL GENE;

AMINO ACID SEQUENCE; BACTERIA; BACTERIAL PROTEINS; CARRIER PROTEINS; GENES, BACTERIAL; GTP-BINDING PROTEINS; HYDROGEN; HYDROGENASE; IRON; MOLECULAR CHAPERONES; MOLECULAR SEQUENCE DATA; MULTIENZYME COMPLEXES; MUTATION; NICKEL; OPERON; PROTEIN PRECURSORS; SEQUENCE ALIGNMENT; SPECIES SPECIFICITY;

EID: 0035340936     PISSN: 0966842X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0966-842X(01)02009-1     Document Type: Review

References (75)

1. 2O, and NO)
2. Voltametric studies of the catalytic electron-transfer process between the Desulfovibrio gigas hydrogenase and small proteins isolated from the same genus
3. The NADP-reducing hydrogenase of Desulfovibrio fructosovorans: Evidence for a native complex with hydrogen-dependent methyl-viologen-reducing activity
4. Molecular biology of hydrogen utilization in aerobic chemolithotrophs
5. Hydrogenase
6. Structure-function relationships among the nickel-containing hydrogenases
7. The structure and mechanism of iron-hydrogenases
8. Nickel hydrogenases: In search of the active site
9. The crystal structure of a reduced [NiFeSe] hydrogenase provides an image of the activated catalytic center
10. Unusual ligand structure in Ni-Fe active center and an additional Mg site in hydrogenase revealed by high resolution X-ray structure analysis
11. Desulfovibrio desulfuricans iron hydrogenase: The structure shows unusual coordination to an active site Fe binuclear center
12. X-ray crystal structure of the Fe-only hydrogenase (CpI) from Clostridium pasteurianum to 1.8 Å resolution
13. Crystal structure of the nickel-iron hydrogenase from Desulfovibrio gigas
14. Physiology, biochemistry, and genetics of the uptake hydrogenase in Rhizobia
15. The mesophilic hydrogen-oxidizing (Knallgas) bacteria
16. Hydrogenase, nitrogenase, and hydrogen metabolism in the photosynthetic bacteria
17. Depression of hydrogenase during limitation of electron donors and derepression of ribulosebisphosphate carboxylase during carbon limitation of Alcaligenes eutrophus
18. Competition for electron donors among nitrate reducers, ferric iron reducers, sulfate reducers, and methanogens in anoxic paddy soil
19. Hydrogen metabolism and sulfate-dependent inhibition of methanogenesis in eutrophic lake sediment (Lake Mendota)
20. 2-dependent anaerobic growth of Escherichia coli on L-malate: Succinate
21. Biosynthetic pathways of Vibrio succinogenes growing with fumarate as terminal electron acceptor and sole carbon source
22. Microbial production of hydrogen: An overview
23. Biological hydrogen production: Not so elementary
24. 2 transfer to sulfate and ferric iron-reducing bacteria in acetate consuption in anoxic paddy soil
25. Syntrophism among prokaryotes
26. Biological activation of hydrogen
27. 2
28. Novel metal sites in protein structures
29. A novel FeS cluster in Fe-only hydrogenases
30. Structure and mechanism of iron-only hydrogenases
31. Gas access to the active site of Ni-Fe hydrogenases probed by X-ray crystallography and molecular dynamics
32. Nickel incorporation into hydrogenases
33. Microbial nickel transport and incorporation into hydrogenases
34. The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
35. Sequences, organization and analysis of the hupZMNOQRTV genes from the Azotobacter chroococcum hydrogenase gene cluster
36. Cloning, sequencing, and mutational analysis of the hyb operon encoding Escherichia coli hydrogenase 2
37. The Alcaligenes eutrophus membrane-bound hydrogenase gene locus encodes functions involved in maturation and electron transport coupling
38. Mutational analysis of the operon (hyc) determining hydrogenase 3 formation in Escherichia coli
39. Heterologous expression of the Desulfovibrio gigas [NiFe] hydrogenase in Desulfovibrio fructosovorans MR400
40. The hyp operon gene products are required for the maturation of catalytically active hydrogenase isoenzymes in Escherichia coli
41. Analysis of the hydA locus of Escherichia coli: Two genes (hydN and hypF) involved in formate and hydrogen metabolism
42. hyp gene products in Alcaligenes eutrophus are part of a hydrogenase-maturation system
43. Duplication of hyp genes involved in maturation of [NiFe] hydrogenases in Alcaligenes eutrophus H16
44. Restoration of hydrogenase activity in hydrogenase-negative strains of Escherichia coli by cloned DNA fragments from Chromatium vinosum and Proteus vulgaris
45. Interaction of the hydrogenase accessory protein HypC with HycE, the large subunit of Escherichia coli hydrogenase 3 during enzyme maturation
46. Analysis of the HypC-hycE complex, a key intermediate in the assembly of the metal center of the Escherichia coli hydrogenase 3
47. Dissection of the maturation reactions of the [NiFe] hydrogenase 3 from Escherichia coli taking place after nickel incorporation
48. Generation of active [NiFe] hydrogenase in vitro from a nickel-free precursor form
49. Rhodobacter capsulatus HypF is involved in regulation of hydrogenase synthesis through the HupUV proteins
50. Carbamoylphosphate requirement for synthesis of the active center of [NiFe]-hydrogenases
51. Organization of the genes necessary for hydrogenase expression in Rhodobacter capsulatus. Sequence analysis and identification of two hyp regulatory mutants
52. A zinc finger-like domain of the molecular chaperone DnaJ is involved in binding to denatured protein substrates
53. The protein-protein interaction map of Helicobacter pylori
54. 2-oxidation in Azotobacter vinelandii
55. The hydrogenase gene cluster of Rhizobium leguminosarum bv. viciae contains an additional gene (hypX), which encodes a protein with sequence similarity to the N10-formyltetrahydrofolate-dependent enzyme family and is required for nickel-dependent hydrogenase processing and activity
56. hoxX (hypX) is a functional member of the Alcaligenes eutrophus hyp gene cluster
57. Roles of HoxX and HoxA in biosynthesis of hydrogenase in Bradyrhizobium japonicum
58. HupK, a hydrogenase-ancillary protein from Rhizobium leguminosarum, shares structural motifs with the large subunit of NiFe hydrogenases and could be a scaffolding protein for hydrogenase metal cofactor assembly
59. The active site of Ni-Fe hydrogenases: Model chemistry and crystallographic results
60. Reassignment of the gene encoding the Escherichia coli hydrogenase 2 small subunit - Identification of a soluble precursor of the small subunit in a hypB mutant
61. GTP hydrolysis by HypB is essential for nickel insertion into hydrogenases of Escherichia coli
62. The HypB protein from Bradyrhizobium japonicum can store nickel and is required for the nickel-dependent transcriptional regulation of hydrogenase
63. Dual roles of Bradyrhizobium japonicum nickelin protein in nickel storage and GTP-dependent Ni mobilization
64. Nickel transport systems in microorganisms
65. 2-activating site of the NAD-reducing hydrogenase from Alcaligenes eutrophus
66. Characterisation of a protease from Escherichia coli involved in hydrogenase maturation
67. Carboxyl-terminal processing of the cytoplasmic NAD-reducing hydrogenase of Alcaligenes eutrophus requires the hoxW gene product
68. Crystal structure of the hydrogenase maturating endopeptidase HybD from Escherichia coli
69. Carboxy-terminal processing of the large subunit of [NiFe] hydrogenases
70. Maturation of the large subunit (HycE) of Escherichia coli hydrogenase 3 requires nickel incorporation followed by C-terminal processing at Arg537
71. Nickel incorporation into hydrogenase 3 from Escherichia coli requires the precursor form of the large subunit
72. 2-activating subunit, HoxH, directs maturation of the NAD-reducing hydrogenase in Alcaligenes eutrophus
73. Analysis of the cleavage site specificity of the endopeptidase involved in the maturation of the large subunit of hydrogenase 3 from Escherichia coli
74. Nickel serves as a substrate recognition motif for the endopeptidase involved in hydrogenase maturation
75. The hydrogenase cytochrome b heme ligands of Azotobacter vinelandii are required for full H(2) oxidation capability