Subtractive transcriptomics: Establishing polarity drives in vitro human endothelial morphogenesis

Cancer Research

Volumn 66, Issue 8, 2006, Pages 4030-4040

  Glesne, David A ^a   Zhang, Wen ^a   Mandava, Suneeta ^a   Ursos, Lyann ^a   Buell, Margaret E ^a   Makowski, Lee ^a   Rodi, Diane J ^a  

^a ARGONNE NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANGIOGENESIS; ARTICLE; CELL ADHESION; CELL MIGRATION; CELL PROLIFERATION; CONTROLLED STUDY; ENDOTHELIUM CELL; HUMAN; HUMAN CELL; IMMUNOFLUORESCENCE; IN VITRO STUDY; MICROARRAY ANALYSIS; MICROENVIRONMENT; MORPHOGENESIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; REAL TIME POLYMERASE CHAIN REACTION; TRANSCRIPTOMICS; UNINDEXED SEQUENCE; UPREGULATION;

CELL GROWTH PROCESSES; CELLS, CULTURED; COLLAGEN; DRUG COMBINATIONS; ENDOTHELIAL CELLS; GENE EXPRESSION PROFILING; HUMANS; LAMININ; NEOVASCULARIZATION, PATHOLOGIC; NEOVASCULARIZATION, PHYSIOLOGIC; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROTEOGLYCANS; TRANSCRIPTION, GENETIC;

EID: 33646231757     PISSN: 00085472     EISSN: None     Source Type: Journal    
DOI: 10.1158/0008-5472.CAN-05-3294     Document Type: Article

References (36)

1. Auerbach R, Lewis R, Shinners B, Kubai L, Akhtar N. Angiogenesis assays: a critical overview. Clin Chem 2003;49:32-40.
2. Glienke J, Schmitt AO, Pilarsky C, et al. Differential gene expression by endothelial cells in distinct angiogenic states. Eur J Biochem 2000;267:2820-30.
3. Jih YJ, Lien WH, Tsai WC, Yang GW, Li C, Wu LW. Distinct regulation of genes by bFGF and VEGF-A in endothelial cells. Angiogenesis 2001;4:313-21.
4. Abe M, Sato Y. cDNA microarray analysis of the gene expression profile of VEGF-activated human umbilical vein endothelial cells. Angiogenesis 2001;4:289-98.
5. Grove AD, Prabhu W, Young BL, et al. Both protein activation and gene expression are involved in early vascular tube formation in vitro. Clin Cancer Res 2002;8:3019-26.
6. Gerritsen ME, Soriano R, Yang S, et al. Branching out: a molecular fingerprint of endothelial differentiation into tube-like structures generated by Affymetrix oligonucleotide arrays. Microcirculation 2003;10:63-81.
7. Kubota Y, Kleinman HK, Martin GR, Lawley TJ. Role of laminin and basement membrane in the morphological differentiation of human endothelial cells in capillary-like structures. J Cell Biol 1988;107:1589-98.
8. Wilson MJ, Sinha AA. Human prostate tumor angiogenesis in nude mice: metalloprotease and plasminogen activator activities during tumor growth and neovascularization of subcutaneously injected Matrigel impregnated with human prostate tumor cells. Anat Rec 1997;249:63-73.
9. Jiang Y, Zhang W, Kondo K, et al. Gene expression profiling in a renal cell carcinoma cell line: dissecting VHL and hypoxia-dependent pathways. Mol Cancer Res 2003;1:453-62.
10. Connolly JO, Simpson N, Hewlett L, Hall A. Rac regulates endothelial morphogenesis and capillary assembly. Mol Biol Cell 2002;13:2474-85.
11. Speidel CC. Studies of living nerves. II. Activities of ameboid growth cones, sheath cells, and myelin segments as revealed by prolonged observation of individual nerve fibers in frog tadpoles. Am J Anat 1933;52:1-79.
12. Gerhardt H, Golding M, Fruttiger M, et al. VEGF guides angiogenic sprouting utilizing endothelial tip cell filopodia. J Cell Biol 2003;161:1163-77.
13. Henderson AM, Wang SJ, Taylor AC, Aitkenhead M, Hughes CC. The basic helix-loop-helix transcription factor HESR1 regulates endothelial cell tube formation. J Biol Chem 2001;276:6169-76.
14. Zhong TP, Rosenberg M, Mohideen MA, Weinstein B, Fishman MC. gridlock, an HLH gene required for assembly of the aorta in zebrafish. Science 2000;287: 1820-4.
15. Volin MV, Joseph L, Shockley MS, Davies PF. Chemokine receptor CXCR4 expression in endothelium. Biochem Biophys Res Commun 1998;242:46-53.
16. Liu D, Jia H, Holmes DI, Stannard A, Zachary I. Vascular endothelial growth factor-regulated gene expression in endothelial cells: KDR-mediated induction of Egr3 and the related nuclear receptors Nur77, Nurr1, and Nor1. Arterioscler Thromb Vasc Biol 2003;23:2002-7.
17. Bell SE, Mavila A, Salazar R, et al. Differential gene expression during capillary morphogenesis in 3D collagen matrices: regulated expression of genes involved in basement membrane matrix assembly, cell cycle progression, cellular differentiation and G-protein signaling. J Cell Sci 2001;114:2755-73.
18. Gerritsen ME, Tomlinson JE, Zlot C, Ziman M, Hwang S. Using gene expression profiling to identify the molecular basis of the synergistic actions of hepatocyte growth factor and vascular endothelial growth factor in human endothelial cells. Br J Pharmacol 2003;140:595-610.
19. Chi JT, Chang HY, Haraldsen G, et al. Endothelial cell diversity revealed by global expression profiling. Proc Natl Acad Sci U S A 2003;100:10623-8.
20. Wang JL, Liu VH, Lee MC, et al. Identification of tumor angiogenesis-related genes by subtractive hybridization. Microvasc Res 2000;59:394-7.
21. St Croix B, Rago C, Velculescu V, et al. Genes expressed in human tumor endothelium. Science 2000;289:1197-202.
22. Cremer T, Cremer C. Chromosome territories, nuclear architecture and gene regulation in mammalian cells. Nat Rev Genet 2001;2:292-301.
23. Spilianakis CG, Lalioti MD, Town T, Lee GR, Flavell RA. Interchromosomal associations between alternatively expressed loci. Nature 2005;435:637-45.
24. Oliver B, Parisi M, Clark D. Gene expression neighborhoods. J Biol 2002;1:4.
25. West AG, Fraser P. Remote control of gene transcription. Hum Mol Genet 2005;14:R101-11.
26. Schaefer AW, Kabir N, Forscher P. Filopodia and actin arcs guide the assembly and transport of two populations of microtubules with unique dynamic parameters in neuronal growth cones. J Cell Biol 2002;158:139-52.
27. Meyer GT, Matthias LJ, Noack L, Vadas MA, Gamble JR. Lumen formation during angiogenesis in vitro involves phagocytic activity, formation and secretion of vacuoles, cell death, and capillary tube remodelling by different populations of endothelial cells. Anat Rec 1997; 249:327-40.
28. Miyoshi K, Wakioka T, Nishinakamura H, et al. The Sprouty-related protein, Spred, inhibits cell motility, metastasis, and Rho-mediated actin reorganization. Oncogene 2004;23:5567-76.
29. Davis GE, Black SM, Bayless KJ. Capillary morphogenesis during human endothelial cell invasion of three-dimensional collagen matrices. In Vitro Cell Dev Biol Anim 2000;36:513-9.
30. Hinck L. The versatile roles of "axon guidance" cues in tissue morphogenesis. Dev Cell 2004;7:783-93.
31. Takeichi M, Nakagawa S, Aono S, Usui T, Uemura T. Patterning of cell assemblies regulated by adhesion receptors of the cadherin superfamily. Philos Trans R Soc Lond B Biol Sci 2000;29:885-90.
32. Newman SA, Muller GB. Epigenetic mechanisms of character origination. J Exp Zool 2000;288:304-17.
33. Kamei T, Matozaki T, Sakisaka T, et al. Coendocytosis of cadherin and c-Met coupled to disruption of cell-cell adhesion in MDCK cells-regulation by Rho, Rac and Rab small G proteins. Oncogene 1999;18:6776-84.
34. Le TL, Yap AS, Stow JL. Recycling of E-cadherin: a potential mechanism for regulating cadherin dynamics. J Cell Biol 1999;146:219-32.
35. 1 integrin-dependent cell motility through association and control of integrin traffic. EMBO J 1999;18:3909-23.
36. Bein K, Odell-Fiddler ET, Drinane M. Role of TGF-β1 and JNK signaling in capillary tube patterning. Am J Physiol Cell Physiol 2004;287:C1012-22.