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Volumn 172, Issue 4, 2006, Pages 2583-2599

Modeling haplotype block variation using Markov chains

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALLELE; ARTICLE; CHROMOSOME; DATA ANALYSIS; ERROR; GENE LINKAGE DISEQUILIBRIUM; GENE MAPPING; GENETIC ANALYSIS; GENETIC LINKAGE; GENETIC MODEL; GENETIC VARIABILITY; HAPLOTYPE; PRIORITY JOURNAL; PROBABILITY; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 33646191869     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.105.042978     Document Type: Article
Times cited : (9)

References (36)
  • 1
    • 0041664867 scopus 로고    scopus 로고
    • Finding haplotype block boundaries by using the minimum-description-length principle
    • ANDERSON, E., and J. NOVEMBRE, 2003 Finding haplotype block boundaries by using the minimum-description-length principle. Am. J. Hum. Genet. 73: 336-354.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 336-354
    • Anderson, E.1    Novembre, J.2
  • 2
    • 0036208832 scopus 로고    scopus 로고
    • Patterns of linkage disequilibrium in the human genome
    • ARDLIE, K. G., L. KRUGLYAK and M. SEIELSTAD, 2002 Patterns of linkage disequilibrium in the human genome. Nat. Rev. Genet. 3: 299-309.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 299-309
    • Ardlie, K.G.1    Kruglyak, L.2    Seielstad, M.3
  • 3
    • 0038052719 scopus 로고    scopus 로고
    • Hot and cold spots of recombination in the human genome: The reason we should find them and how this can be achieved
    • ARNHEIM, N., P. CALABRESE and M. NORDBORG, 2003 Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved. Am. J. Hum. Genet. 73: 5-16.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 5-16
    • Arnheim, N.1    Calabrese, P.2    Nordborg, M.3
  • 4
    • 0037370629 scopus 로고    scopus 로고
    • Using haplotype blocks to map human complex trait loci
    • CARDON, L., and G. ABECASIS, 2003 Using haplotype blocks to map human complex trait loci. Trends Genet. 19: 135-140.
    • (2003) Trends Genet. , vol.19 , pp. 135-140
    • Cardon, L.1    Abecasis, G.2
  • 5
    • 0034791035 scopus 로고    scopus 로고
    • High-resolution haplotype structure in the human genome
    • DALY, M., J. RIOUX, S. SCHAFFNER, T. HUDSON and E. LANDER, 2001 High-resolution haplotype structure in the human genome. Nat. Genet. 29: 229-232.
    • (2001) Nat. Genet. , vol.29 , pp. 229-232
    • Daly, M.1    Rioux, J.2    Schaffner, S.3    Hudson, T.4    Lander, E.5
  • 6
    • 0029150074 scopus 로고
    • A comparison of linkage disequilibrium measures for fine-scale mapping
    • DEVLIN, B., and N. RISCH, 1995 A comparison of linkage disequilibrium measures for fine-scale mapping. Genomics 29: 311-322.
    • (1995) Genomics , vol.29 , pp. 311-322
    • Devlin, B.1    Risch, N.2
  • 7
    • 18444369013 scopus 로고    scopus 로고
    • The structure of haplotype blocks in the human genome
    • GABRIEL, S. B., S. F. SCHAFFNER, H. NGUYEN, J. M. MOORE, J. ROY et al., 2002 The structure of haplotype blocks in the human genome. Science 296: 2225-2229.
    • (2002) Science , vol.296 , pp. 2225-2229
    • Gabriel, S.B.1    Schaffner, S.F.2    Nguyen, H.3    Moore, J.M.4    Roy, J.5
  • 8
    • 0003143606 scopus 로고
    • On the probability theory of linkage in Mendelian heredity
    • GEIRINGER, H., 1944 On the probability theory of linkage in Mendelian heredity. Ann. Math. Stat. 15: 25-37.
    • (1944) Ann. Math. Stat. , vol.15 , pp. 25-37
    • Geiringer, H.1
  • 9
    • 0034791032 scopus 로고    scopus 로고
    • Islands of linkage disequilibrium
    • GOLDSTEIN, D., 2001 Islands of linkage disequilibrium. Nat. Genet. 29: 109-111.
    • (2001) Nat. Genet. , vol.29 , pp. 109-111
    • Goldstein, D.1
  • 10
    • 3142516146 scopus 로고    scopus 로고
    • Model-based inference of haplotype block variation
    • GREENSPAN, G., and D. GEIGER, 2004a Model-based inference of haplotype block variation. J. Comp. Biol. 11: 493-504.
    • (2004) J. Comp. Biol. , vol.11 , pp. 493-504
    • Greenspan, G.1    Geiger, D.2
  • 11
    • 13844302126 scopus 로고    scopus 로고
    • High density linkage disequilibrium mapping using models of haplotype block variation
    • GREENSPAN, G., and D. GEIGER, 2004b High density linkage disequilibrium mapping using models of haplotype block variation. Bioinformatics 20(Suppl. 1): I137-I144.
    • (2004) Bioinformatics , vol.20 , Issue.1 SUPPL.
    • Greenspan, G.1    Geiger, D.2
  • 12
    • 37049251476 scopus 로고
    • Mendelian proportions in a mixed population
    • HARDY, G. H., 1908 Mendelian proportions in a mixed population. Science 18: 49-50.
    • (1908) Science , vol.18 , pp. 49-50
    • Hardy, G.H.1
  • 13
    • 79959503826 scopus 로고    scopus 로고
    • The International HapMap Project
    • INTERNATIONAL HAPMAP CONSORTIUM, 2003 The International HapMap Project. Nature 426: 789-796.
    • (2003) Nature , vol.426 , pp. 789-796
  • 14
    • 0034701292 scopus 로고    scopus 로고
    • High resolution analysis of haplotype diversity and meiotic crossover in the human TAP2 recombination hotspot
    • JEFFREYS, A., A. RITCHIE and R. NEUMANN, 2000 High resolution analysis of haplotype diversity and meiotic crossover in the human TAP2 recombination hotspot. Hum. Mol. Genet. 9: 725-733.
    • (2000) Hum. Mol. Genet. , vol.9 , pp. 725-733
    • Jeffreys, A.1    Ritchie, A.2    Neumann, R.3
  • 15
    • 0034795550 scopus 로고    scopus 로고
    • Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex
    • JEFFREYS, A., L. KAUPPI and R. NEUMANN, 2001 Intensely punctate meiotic recombination in the class II region of the major histocompatibility complex. Nat. Genet. 29: 217-222.
    • (2001) Nat. Genet. , vol.29 , pp. 217-222
    • Jeffreys, A.1    Kauppi, L.2    Neumann, R.3
  • 16
    • 0034789532 scopus 로고    scopus 로고
    • Haplotype tagging for the identification of common disease genes
    • JOHNSON, G. C., L. ESPOSITO, B. J. BARRATT, A. N. SMITH, J. HEWARD et al., 2001 Haplotype tagging for the identification of common disease genes. Nat. Genet. 29: 233-237.
    • (2001) Nat. Genet. , vol.29 , pp. 233-237
    • Johnson, G.C.1    Esposito, L.2    Barratt, B.J.3    Smith, A.N.4    Heward, J.5
  • 20
    • 0034761849 scopus 로고    scopus 로고
    • Bayesian analysis of haplotypes for linkage disequilibrium mapping
    • LIU, J., C. SABATTI, J. TENG, B. KEATS and N. RISCH, 2001 Bayesian analysis of haplotypes for linkage disequilibrium mapping. Genome Res. 11: 1716-1724.
    • (2001) Genome Res. , vol.11 , pp. 1716-1724
    • Liu, J.1    Sabatti, C.2    Teng, J.3    Keats, B.4    Risch, N.5
  • 21
    • 0033358667 scopus 로고    scopus 로고
    • Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to finescale genetic mapping
    • MCPEEK, M., and A. STRAHS, 1999 Assessment of linkage disequilibrium by the decay of haplotype sharing, with application to finescale genetic mapping. Am. J. Hum. Genet. 65: 858-875.
    • (1999) Am. J. Hum. Genet. , vol.65 , pp. 858-875
    • McPeek, M.1    Strahs, A.2
  • 22
    • 0033910724 scopus 로고    scopus 로고
    • Bayesian fine-scale mapping of disease loci, by hidden Markov models
    • MORRIS, A., J. WHITTAKER and D. BALDING, 2000 Bayesian fine-scale mapping of disease loci, by hidden Markov models. Am. J. Hum. Genet. 67: 155-169.
    • (2000) Am. J. Hum. Genet. , vol.67 , pp. 155-169
    • Morris, A.1    Whittaker, J.2    Balding, D.3
  • 23
    • 0036177752 scopus 로고    scopus 로고
    • Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies
    • MORRIS, A. P., J. C. WHITTAKER and D. J. BALDING, 2002 Fine-scale mapping of disease loci via shattered coalescent modeling of genealogies. Am. J. Hum. Genet. 70: 686-707.
    • (2002) Am. J. Hum. Genet. , vol.70 , pp. 686-707
    • Morris, A.P.1    Whittaker, J.C.2    Balding, D.J.3
  • 24
    • 0035941029 scopus 로고    scopus 로고
    • Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21
    • PATIL, N., A. J. BERNO, D. A. HINDS, W. A. BARRETT, J. M. DOSHI et al., 2001 Blocks of limited haplotype diversity revealed by high-resolution scanning of human chromosome 21. Science 294: 1719-1723.
    • (2001) Science , vol.294 , pp. 1719-1723
    • Patil, N.1    Berno, A.J.2    Hinds, D.A.3    Barrett, W.A.4    Doshi, J.M.5
  • 25
    • 0037370466 scopus 로고    scopus 로고
    • Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots
    • PHILLIPS, M. S., R. LAWRENCE, R. SACHIDANANDAM, A. P. MORRIS, D. J. BALDING et al., 2003 Chromosome-wide distribution of haplotype blocks and the role of recombination hot spots. Nat. Genet. 33: 382-387.
    • (2003) Nat. Genet. , vol.33 , pp. 382-387
    • Phillips, M.S.1    Lawrence, R.2    Sachidanandam, R.3    Morris, A.P.4    Balding, D.J.5
  • 28
    • 0033940849 scopus 로고    scopus 로고
    • Recombinational and mutational hotspots within the human lipoprotein lipase gene
    • TEMPLETON, A., A. CLARK, K. WEISS, D. NICKERSON, E. BOERWINKLE et al., 2000 Recombinational and mutational hotspots within the human lipoprotein lipase gene. Am. J. Hum. Genet. 66: 69-83.
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 69-83
    • Templeton, A.1    Clark, A.2    Weiss, K.3    Nickerson, D.4    Boerwinkle, E.5
  • 29
    • 0344585289 scopus 로고    scopus 로고
    • Role of evolutionary history on haplotype block structure in the human genome: Implications for disease mapping
    • TISHKOFF, S. A., and B. C. VERRELLI, 2003 Role of evolutionary history on haplotype block structure in the human genome: implications for disease mapping. Curr. Opin. Genet. Dev. 13: 569-575.
    • (2003) Curr. Opin. Genet. Dev. , vol.13 , pp. 569-575
    • Tishkoff, S.A.1    Verrelli, B.C.2
  • 30
    • 0037648420 scopus 로고    scopus 로고
    • Haplotype structure, LD blocks, and uneven recombination within the LRP5 gene
    • TWELLS, R. C., C. A. MEIN, M. S. PHILLIPS, J. F. HESS, R. VEIJOLA et al., 2003 Haplotype structure, LD blocks, and uneven recombination within the LRP5 gene. Genome Res. 13: 845-855.
    • (2003) Genome Res. , vol.13 , pp. 845-855
    • Twells, R.C.1    Mein, C.A.2    Phillips, M.S.3    Hess, J.F.4    Veijola, R.5
  • 31
    • 0037234025 scopus 로고    scopus 로고
    • The interval of linkage disequilibrium (LD) detected with microsatellite and SNP markers in chromosomes of Finnish populations with different histories
    • VARILO, T., T. PAUNIO, A. PARKER, M. PEROLA, J. MEYER et al., 2003 The interval of linkage disequilibrium (LD) detected with microsatellite and SNP markers in chromosomes of Finnish populations with different histories. Hum. Mol. Genet. 12: 51-59.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 51-59
    • Varilo, T.1    Paunio, T.2    Parker, A.3    Perola, M.4    Meyer, J.5
  • 32
    • 0042387813 scopus 로고    scopus 로고
    • Assessing the performance of the haplotype block model of linkage disequilibrium
    • WALL, J. D., and J. K. PRITCHARD, 2003 Assessing the performance of the haplotype block model of linkage disequilibrium. Am. J. Hum. Genet. 73: 502-515.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 502-515
    • Wall, J.D.1    Pritchard, J.K.2
  • 33
    • 0036844238 scopus 로고    scopus 로고
    • Distribution of recombination crossovers and the origin of haplotype blocks: The interplay of population history, recombination, and mutation
    • WANG, N., J. AKEY, K. ZHANG, R. CHAKRABORTY and L. JIN, 2002 Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history, recombination, and mutation. Am. J. Hum. Genet. 71: 1227-1234.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1227-1234
    • Wang, N.1    Akey, J.2    Zhang, K.3    Chakraborty, R.4    Jin, L.5
  • 34
    • 0037480726 scopus 로고    scopus 로고
    • HaploBlockFinder: Haplotype block analyses
    • ZHANG, K., and L. JIN, 2003 HaploBlockFinder: haplotype block analyses. Bioinformatics 19: 1300-1301.
    • (2003) Bioinformatics , vol.19 , pp. 1300-1301
    • Zhang, K.1    Jin, L.2
  • 35
    • 0242438893 scopus 로고    scopus 로고
    • Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations
    • ZHANG, J., W. L. ROWE, A. G. CLARK and K. H. BUETOW, 2003 Genomewide distribution of high-frequency, completely mismatching SNP haplotype pairs observed to be common across human populations. Am. J. Hum. Genet. 73: 1073-1081.
    • (2003) Am. J. Hum. Genet. , vol.73 , pp. 1073-1081
    • Zhang, J.1    Rowe, W.L.2    Clark, A.G.3    Buetow, K.H.4
  • 36
    • 0036918575 scopus 로고    scopus 로고
    • Haplotype block structure and its applications to association studies: Power and study designs
    • ZHANG, K., P. CALABRESE, M. NORDBORG and F. SUN, 2002 Haplotype block structure and its applications to association studies: power and study designs. Am. J. Hum. Genet. 71: 1386-1394.
    • (2002) Am. J. Hum. Genet. , vol.71 , pp. 1386-1394
    • Zhang, K.1    Calabrese, P.2    Nordborg, M.3    Sun, F.4


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