Development of a polymerase chain reaction assay for the specific identification of Burkholderia mallei and differentiation from Burkholderia pseudomallei and other closely related Burkholderiaceae

Diagnostic Microbiology and Infectious Disease

Volumn 55, Issue 1, 2006, Pages 37-45

  Ulrich, Ricky L ^a   Ulrich, Melanie P ^a   Schell, Mark A ^b,c   Kim, H Stanley ^d   DeShazer, David ^a  

^a UNITED STATES ARMY MEDICAL RESEARCH INSTITUTE OF INFECTIOUS DISEASES   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

^c UNIVERSITY OF GEORGIA   (United States)

^d J CRAIG VENTER INSTITUTE   (United States)

Author keywords

Burkholderia; Glanders; Melioidosis; PCR

Indexed keywords

GENOMIC DNA;

ARTICLE; BACTERIAL GENE; BACTERIAL GENOME; BACTERIUM IDENTIFICATION; BURKHOLDERIA MALLEI; BURKHOLDERIA PSEUDOMALLEI; BURKHOLDERIACEAE; CHROMOSOME; COMPARATIVE STUDY; CONTROLLED STUDY; DNA SEQUENCE; ENVIRONMENT; GENETIC IDENTIFICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

BACTERIAL TYPING TECHNIQUES; BURKHOLDERIA MALLEI; BURKHOLDERIA PSEUDOMALLEI; DNA PRIMERS; DNA, BACTERIAL; GENES, BACTERIAL; GENOTYPE; GLANDERS; HUMANS; MELIOIDOSIS; POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY;

EID: 33646156173     PISSN: 07328893     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.diagmicrobio.2005.11.007     Document Type: Article

References (35)

1. Antonov V.A., et al. Use of PCR for identification of Burkholderia mallei (in Russian). Mol. Gen. Mikrobiol. Virusol. 1 (2004) 12-17
2. Anuntagool N., and Sirisinha S. Antigenic relatedness between Burkholderia pseudomallei and Burkholderia mallei. Microbiol. Immunol. 46 (2002) 143-150
3. Bauernfeind A., et al. Molecular procedure for rapid detection of Burkholderia mallei and Burkholderia pseudomallei. J. Clin. Microbiol. 36 (1998) 2737-2741
4. Brett P.J., et al. Characterization of Burkholderia pseudomallei and Burkholderia pseudomallei-like strains. Epidemiol. Infect. 118 (1997) 137-148
5. Brett P.J., et al. Burkholderia thailandensis sp. nov., description of a Burkholderia pseudomallei-like species. Int. J. Syst. Bacteriol. 48 (1998) 317-320
6. Burtnick M.N., et al. Molecular and physical characterization of Burkholderia mallei O antigens. J. Bacteriol. 184 (2002) 849-852
7. Cheng A.C., and Currie B.J. Melioidosis: Epidemiology, pathophysiology, and management. Clin. Microbiol. Rev. 18 (2005) 383-416
8. Dance D.A.B. Melioidosis. Curr. Opin. Infect. Dis. 15 (2002) 127-132
9. DeShazer D. Genomic diversity of Burkholderia pseudomallei clinical isolates: Subtractive hybridization reveals a Burkholderia mallei-specific prophage in B. pseudomallei 1026b. J. Bacteriol. 186 (2004) 3938-3950
10. Gee J.E., et al. Use of 16S rRNA gene sequencing for rapid identification and differentiation of Burkholderia pseudomallei and B. mallei. J. Clin. Microbiol. 41 (2003) 4647-4654
11. Glass M.B., and Popovic T. Preliminary evaluation of the API 20NE and RapID NF plus systems for rapid identification of Burkholderia pseudomallei and B. mallei. J. Clin. Microbiol. 43 (2005) 479-483
12. Godoy D., et al. Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and B. mallei. J. Clin. Microbiol. 41 (2003) 2068-2079
13. Hagen R.M., et al. Strategies for PCR based detection of Burkholderia pseudomallei DNA in paraffin wax embedded tissues. Mol. Pathol. 55 (2002) 398-400
14. Henderson I.R., et al. Type V protein secretion pathway: The autotransporter story. Microbiol. Mol. Biol. Rev. 68 (2004) 692-744
15. Holden M.T., et al. Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. Proc. Natl. Acad. Sci. 101 (2004) 14240-14245
16. Inglis T.J., et al. Potential misidentification of Burkholderia pseudomallei by API 20NE. Pathology 30 (1998) 62-64
17. Lee M.A., et al. Detection and differentiation of Burkholderia pseudomallei, Burkholderia mallei and Burkholderia thailandensis by multiplex PCR. FEMS Immunol. Med. Microbiol. 43 (2005) 413-417
18. Neubauer H., et al. Human glanders. Revue Internationale Des Services De Sante Des Forces Armees 70 (1997) 258-265
19. Nierman W.C., et al. Structural flexibility in the Burkholderia mallei genome. Proc. Natl. Acad. Sci. 101 (2004) 14246-14251
20. Pitt T.L., et al. Molecular phylogeny of Burkholderia pseudomallei. Acta Trop. 74 (2000) 181-185
21. Rantakokko-Jalava K., et al. Direct amplification of rRNA genes in diagnosis of bacterial infections. J. Clin. Microbiol. 38 (2000) 32-39
22. Richer E., et al. Horizontal gene transfer of "prototype" Nramp in bacteria. J. Mol. Evol. 57 (2003) 363-376
23. Sambrook J., et al. Molecular cloning: A laboratory manual. 2nd ed. (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
24. Sprague L.D., et al. A possible pitfall in the identification of Burkholderia mallei using molecular identification systems based on the sequence of the flagellin fliC gene. FEMS Immunol. Med. Microbiol. 34 (2002) 231-236
25. Stevens J.M., et al. Actin-binding proteins from Burkholderia mallei and Burkholderia thailandensis can functionally compensate for the actin-based motility defect of a Burkholderia pseudomallei bimA mutant. J. Bacteriol. 187 (2005) 7857-7862
26. Stevens M.P., et al. Identification of a bacterial factor required for actin-based motility of Burkholderia pseudomallei. Mol. Microbiol. 56 (2005) 40-53
27. Tanpiboonsak S., et al. PCR-RFLP based differentiation of Burkholderia mallei and Burkholderia pseudomallei. Mol. Cell. Probes 18 (2004) 97-101
28. Thibault F.M., et al. Identification and discrimination of Burkholderia pseudomallei, B. mallei, and B. thailandensis by real-time PCR targeting type III secretion system genes. J. Clin. Microbiol. 42 (2004) 5871-5874
29. Tomaso H., et al. Development of 5′ nuclease real-time PCR assays for the rapid identification of the Burkholderia mallei/Burkholderia pseudomallei complex. Diagn. Mol. Pathol. 13 (2004) 247-253
30. Tomaso H., et al. Rapid presumptive identification of Burkholderia pseudomallei with real-time PCR assays using fluorescent hybridization probes. Mol. Cell. Probes 19 (2005) 9-20
31. Tyler S.D., et al. Oligonucleotide primers designed to differentiate pathogenic pseudomonads on the basis of the sequencing of genes coding for 16S-23S rRNA internal transcribed spacers. Clin Diagn Lab Immunol 2 (1995) 448-453
32. Waag D.M., and DeShazer D. Glanders: New insights into an old disease. Biological weapons defense: Infectious diseases and counterbioterrorism (2004), Humana Press Inc, Totowa, NJ 209-237
33. Wilson K. Preparation of genomic DNA from bacteria. In: Ausubel F.M., Brent R., Kingston R.E., et al. (Eds). Current protocols in molecular biology (1987), John Wiley and Sons, New York 2.4.1-2.4.5
34. Woods D.E., et al. Current studies on the pathogenesis of melioidosis. Microbes Infect. 1 (1999) 157-162
35. Woods D.E., et al. Burkholderia thailandensis E125 harbors a temperate bacteriophage specific for Burkholderia mallei. J. Bacteriol. 184 (2002) 4003-4017