Genome of a novel circovirus of starlings, amplified by multiply primed rolling-circle amplification

Journal of General Virology

Volumn 87, Issue 5, 2006, Pages 1189-1195

  Johne, Reimar ^a   Fernández de Luco, Daniel ^b   Höfle, Ursula ^c   Müller, Hermann ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b UNIVERSIDAD DE ZARAGOZA   (Spain)

^c Faculty of Veterinary Medicine   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

CAPSID PROTEIN; CYTOCHROME B; PRIMER DNA; VIRUS PROTEIN;

ANIMAL SALMONELLOSIS; ARTICLE; CANARY; CIRCOVIRIDAE; CONTROLLED STUDY; EPIDEMIC; GENE AMPLIFICATION; GENETIC CODE; GENETIC CONSERVATION; GENETIC VARIABILITY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SAMPLE; SEPTICEMIA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPAIN; SPLEEN; STARLING; VIRUS CELL INTERACTION; VIRUS DETECTION; VIRUS GENOME; VIRUS REPLICATION; WILD SPECIES;

AMINO ACID SEQUENCE; CAPSID PROTEINS; CIRCOVIRIDAE INFECTIONS; CIRCOVIRUS; CYTOCHROMES B; EVOLUTION; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; OPEN READING FRAMES; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPAIN; SPECIES SPECIFICITY; SPLEEN; STARLINGS; VIRAL PROTEINS;

AVES; CANARY CIRCOVIRUS; CIRCOVIRUS; MIRIDAE; STURNIDAE; STURNUS UNICOLOR; STURNUS VULGARIS;

EID: 33646138485     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.81561-0     Document Type: Article

References (31)

1. Allan, G. M. & Ellis, J. A. (2000). Porcine circoviruses: a review. J Vet Diagn Invest 12, 3-14.
2. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
3. Arnal, M. C., Revilla, M., Marco, M. & 7 other authors (2005). Brote de salmonelosis septicémica en estorninos pintos Sturnus vulgaris. In Abstracts of the 17th Meeting of the Spanish Veterinary Pathology Society, p. 106. Jarandilla de la Vera, Cáceres, Spain. 14-16 July 2005.
4. Bassami, M. R., Berryman, D., Wilcox, G. E. & Raidal, S. R. (1998). Psittacine beak and feather disease virus nucleotide sequence analysis and its relationship to porcine circovirus, plant circoviruses, and chicken anaemia virus. Virology 249, 453-459.
5. Chae, C. (2005). A review of porcine circovirus 2-associated syndromes and diseases. Vet J 169, 326-336.
6. Dean, F. B., Nelson, J. R., Giesler, T. L. & Lasken, R. S. (2001). Rapid amplification of plasmid and phage DNA using Phi29 DNA polymerase and multiply-primed rolling circle amplification. Genome Res 11, 1095-1099.
7. de Kloet, E. & de Kloet, S. R. (2004). Analysis of the beak and feather disease viral genome indicates the existence of several genotypes which have a complex psittacine host specificity. Arch Virol 149, 2393-2412.
8. Dekonenko, A., Yakimenko, V., Ivanov, A., Morozov, V., Nikitin, P., Khasanova, S., Dzagurova, T., Tkachenko, E. & Schmaljohn, C. (2003). Genetic similarity of Puumala viruses found in Finland and western Siberia and of the mitochondrial DNA of their rodent hosts suggests a common evolutionary origin. Infect Genet Evol 3, 245-257.
9. Esteban, J. A., Salas, M. & Blanco, L. (1993). Fidelity of Phi29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization. J Biol Chem 268, 2719-2726.
10. Griffiths, C. S., Barrowclough, G. F., Groth, J. G. & Mertz, L. (2004). Phylogeny of the Falconidae (Aves): a comparison of the efficacy of morphological, mitochondrial, and nuclear data. Mol Phylogeny Evol 32, 101-109.
11. Hattermann, K., Schmitt, C., Soike, D. & Mankertz, A. (2003). Cloning and sequencing of duck circovirus (DuCV). Arch Virol 148, 2471-2480.
12. Heath, L., Martin, D. P., Warburton, L., Perrin, M., Horsfield, W., Kingsley, C., Rybicki, E. P. & Williamson, A. L. (2004). Evidence of unique genotypes of beak and feather disease virus in southern Africa. J Virol 78, 9277-9284.
13. Hughes, A. L. & Friedman, R. (2000). Evolutionary diversification of protein-coding genes of hantaviruses. Mol Biol Evol 17, 1558-1568.
14. Johne, R., Raue, R., Grund, C., Kaleta, E. F. & Müller, H. (2004). Recombinant expression of a truncated capsid protein of beak and feather disease virus and its application in serologic tests. Avian Pathol 33, 328-336.
15. Kocher, T. D., Thomas, W. K., Meyer, A., Edwards, S. V., Paabo, S., Villablanca, F. X. & Wilson, A. C. (1989). Dynamics of mitochondrial DNA evolution in animals: amplification and sequencing with conserved primers. Proc Natl Acad Sci U S A 86, 6196-6200.
16. Mankertz, A., Hattermann, K., Ehlers, B. & Soike, D. (2000). Cloning and sequencing of columbid circovirus (CoCV), a new circovirus from pigeons. Arch Virol 145, 2469-2479.
17. Niagro, F. D., Forsthoefel, A. N., Lawther, R. P., Kamalanathan, L., Ritchie, B. W., Latimer, K. S. & Lukert, P. D. (1998). Beak and feather disease virus and porcine circovirus genomes: intermediates between the geminiviruses and plant circoviruses. Arch Virol 143, 1723-1744.
18. Niel, C., Diniz-Mendes, L. & Devalle, S. (2005). Rolling-circle amplification of Torque teno virus (TTV) complete genomes from human and swine sera and identification of a novel swine TTV genogroup. J Gen Virol 86, 1343-1347.
19. Paez, J. G., Lin, M., Beroukhim, R. & 10 other authors (2004). Genome coverage and sequence fidelity of φ29 polymerase-based multiple strand displacement whole genome amplification. Nucleic Acids Res 32, e71.
20. Phenix, K. V., Weston, J. H., Ypelaar, I., Lavazza, A., Smyth, J. A., Todd, D., Wilcox, G. E. & Raidal, S. R. (2001). Nucleotide sequence analysis of a novel circovirus of canaries and its relationship to other members of the genus Circovirus of the family Circoviridae. J Gen Virol 82, 2805-2809.
21. Raue, R., Johne, R., Crosta, L., Bürkle, M., Gerlach, H. & Müller, H. (2004). Nucleotide sequence analysis of a C1 gene fragment of psittacine beak and feather disease virus amplified by real-time PCR indicates a possible existence of pathotypes. Avian Pathol 33, 41-50.
22. Raue, R., Schmidt, V., Freick, M., Reinhardt, B., Johne, R., Kamphausen, L., Kaleta, E. F., Müller, H. & Krautwald-Junghanns, M.-E. (2005). A disease complex associated with pigeon circovirus infection, young pigeon disease syndrome. Avian Pathol 34, 418-425.
23. Rector, A., Bossart, G. D., Ghim, S. J., Sundberg, J. P., Jenson, A. B. & Van Ranst, M. (2004a). Characterization of a novel close-to-root papillomavirus from a Florida manatee by using multiply primed rolling-circle amplification: trichechus manatus latirostris papillomavirus type 1. J Virol 78, 12698-12702.
24. Rector, A., Tachezy, R. & Van Ranst, M. (2004b). A sequence-independent strategy for detection and cloning of circular DNA virus genomes by using multiply primed rolling-circle amplification. J Virol 78, 4993-4998.
25. Rector, A., Tachezy, R., Van Doorslaer, K., MacNamara, T., Burk, R. D., Sundberg, J. P. & Van Ranst, M. (2005). Isolation and cloning of a papillomavirus from a North American porcupine by using multiply primed rolling-circle amplification: the Erethizon dorsatum papillomavirus type 1. Virology 331, 449-456.
26. Soike, D., Albrecht, K., Hattermann, K., Schmitt, C. & Mankertz, A. (2004). Novel circovirus in mulard ducks with developmental and feathering disorders. Vet Rec 154, 792-793.
27. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
28. Todd, D. (2004). Avian circovirus diseases: lessons for the study of PMWS. Vet Microbiol 98, 169-174.
29. Todd, D., Weston, J., Ball, N. W., Borghmanns, B. J., Smyth, J. A., Gelmini, L. & Lavazza, A. (2001a). Nucleotide sequence-based identification of a novel circovirus of canaries. Avian Pathol 30, 321-325.
30. Todd, D., Weston, J. H., Soike, D. & Smyth, J. A. (2001b). Genome sequence determinations and analyses of novel circoviruses from goose and pigeon. Virology 286, 354-362.
31. Todd, D., Bendinelli, M., Biagini, P. & 8 other authors (2005). Circoviridae. In Virus Taxonomy, VIIIth Report of the International Committee for the Taxonomy of Viruses, pp. 327-334. Edited by C. M. Fauquet, M. A. Mayo, J. Maniloff, U. Desselberger & L. A. Ball. London: Elsevier/Academic Press.