Identification of linear plasmid pAM1 in the flavonoid degrading strain Actinoplanes missouriensisT (DSM 43046)

Plasmid

Volumn 55, Issue 3, 2006, Pages 249-254

  Rose, Karsten ^a   Fetzner, Susanne ^a  

^a UNIVERSITY OF MÜNSTER   (Germany)

Author keywords

Actinoplanes missouriensis; Flavonoid glycosides; Linear plasmid; Quercetin; Terminal protein

Indexed keywords

BACTERIAL DNA; FLAVANOID; HESPERIDIN; QUERCETIN; RUTOSIDE;

ACTINOBACTERIA; ACTINOPLANES AURANTICOLOR; ACTINOPLANES BRASILIENSIS; ACTINOPLANES MISSOURIENSIS; ACTINOPLANES UTAHENSIS; ARTICLE; BACTERIAL STRAIN; CHROMOSOME; EUBACTERIUM; GENETIC ANALYSIS; GRAM POSITIVE BACTERIUM; NONHUMAN; PLASMID; PLASMID PAM1; PULSED FIELD GEL ELECTROPHORESIS; REPLICON;

BIODEGRADATION, ENVIRONMENTAL; DIOXYGENASES; ELECTROPHORESIS, GEL, PULSED-FIELD; FLAVONOIDS; HESPERIDIN; MICROMONOSPORACEAE; PLANT DISEASES; PLASMIDS; QUERCETIN; REPLICON; RUTIN;

ACTINOBACTERIA; ACTINOBACTERIA (CLASS); ACTINOPLANES; ACTINOPLANES AURANTICOLOR; ACTINOPLANES BRASILIENSIS; ACTINOPLANES MISSOURIENSIS; ACTINOPLANES UTAHENSIS; BACTERIA (MICROORGANISMS); POSIBACTERIA;

EID: 33646044333     PISSN: 0147619X     EISSN: 10959890     Source Type: Journal    
DOI: 10.1016/j.plasmid.2005.10.003     Document Type: Article

References (49)

1. Bao K., and Cohen S.N. Terminal proteins essential for the replication of linear plasmids and chromosomes in Streptomyces. Genes Dev. 15 (2001) 1518-1527
2. Blaut M., Schoefer L., and Braune A. Transformation of flavonoids by intestinal microorganisms. Int. J. Vitam. Nutr. Res. 73 (2003) 79-87
3. Brandi L., Falconi M., and Ripa S. Plasmid curing effect of trovafloxacin. FEMS Microbiol. Lett. 184 (2000) 297-302
4. Brown S., Young H.K., and Amyes S.G.B. Characterisation of OXA-51, a novel class D carbapenemase found in genetically unrelated clinical strains of Acinetobacter baumannii from Argentina. Clin. Microbiol. Infect. 11 (2005) 15-23
5. Cavalleri B., Pagani H., Volpe G., Selva E., and Parenti F. A-16686, a new antibiotic from Actinoplanes. I. Fermentation, isolation and preliminary physico-chemical characteristics. J. Antibiot. 37 (1984) 309-317
6. Cavalleri B., Volpe G., Tuan G., Berti M., and Parenti F. Chlorinated phenylpyrrole antibiotic from Actinoplanes. Curr. Microbiol. 1 (1978) 319-324
7. Charnock C. Characterization of the cryptic plasmids of the Pseudomonas alcaligenes type strain. Plasmid 37 (1997) 189-198
8. Chen C.W., Huang C.-H., Lee H.-H., Tsai H.-H., and Kirby R. Once the circle has been broken: dynamics and evolution of Streptomyces chromosomes. Trends Genet. 18 (2002) 522-529
9. Dabrock B., Kesseler M., Averhoff B., and Gottschalk G. Identification and characterization of a transmissible linear plasmid from Rhodococcus erythropolis BD2 that encodes isopropylbenzene and trichloroethene catabolism. Appl. Environ. Microbiol. 60 (1994) 853-860
10. Duthie G.G., Gardner P.T., and Kyle J.A.M. Plant polyphenols: are they the new magic bullet?. Proc. Nutr. Soc. 62 (2003) 599-603
11. Fabjan N., Rode J., Kosir I.J., Wang Z.H., Zhang Z., and Kreft I. Tartary buckwheat (Fagopyrum tataricum Gaertn.) as a source of dietary rutin and quercitrin. J. Agric. Food Chem. 51 (2003) 6452-6455
12. Gel-Moreto N., Streich R., and Galensa R. Chiral separation of diasteromeric flavanone-7-O-glycosides in citrus by capillary electrophoresis. Electrophoresis 24 (2003) 2716-2722
13. Gunge N., Takahashi S., Fukuda K., Ohnishi T., and Meinhardt F. UV hypersensitivity of yeast linear plasmids. Curr. Genet. 26 (1994) 369-373
14. Hattori S., and Noguchi I. Microbial degradation of rutin. Nature 184 (1959) 1145-1146
15. Herrmann A.P., Willems M., and Janke H.D. Degradation of natural polyphenols by methanogenic consortia enriched from digested municipal sludge. Water Res. 35 (2001) 2575-2582
16. Hobbs G., Frazer C.M., Gardner D.C.J., Cullum J.A., and Oliver S.G. Dispersed growth of Streptomyces in liquid culture. Appl. Microbiol. Biotechnol. 31 (1989) 272-277
17. II-containing glycoprotein. Eur. J. Biochem. 263 (1999) 871-878
18. Iwashina T. The structure and distribution of the flavonoids in plants. J. Plant Res. 113 (2000) 287-299
19. Jendrossek D., Tomasi G., and Kroppenstedt R.M. Bacterial degradation of natural rubber: a privilege of actinomycetes?. FEMS Microbiol. Lett. 150 (1997) 179-188
20. Karimaki J., Parkkinen T., Santa H., Pastinen O., Leisola M., Rouvinen J., and Turunen O. Engineering the substrate specificity of xylose isomerase. Protein Eng. Des. Sel. 17 (2004) 861-869
21. Katsuya S., Kaneko I., Owaki M., Ishikawa K., Tsujimoto T., and Tsuge T. Circular DNA plasmid in the phytopathogenic fungus Alternaria alternata: its temperature-dependent curing and association with pathogenicity. Genetics 146 (1997) 111-120
22. Kirillov S., Vitali L.A., Goldstein B.P., Monti F., Semenkov Y., Makhno V., Ripa S., Pon C.L., and Gualerzi C.O. Purpuromycin: An antibiotic inhibiting tRNA aminoacylation. RNA 3 (1997) 905-913
23. König C., Eulberg D., Groning J., Lakner S., Seibert V., Kaschabek S.R., and Schlömann M. A linear megaplasmid, p1CP, carrying the genes for chlorocatechol catabolism of Rhodococcus opacus 1CP. Microbiology 150 (2004) 3075-3087
24. Kosono S., Maeda M., Fuji F., Arai H., and Kudo T. Three of the seven bphC genes of Rhodococcus erythropolis TA421, isolated from a termite ecosystem, are located on an indigenous plasmid associated with biphenyl degradation. Appl. Environ. Microbiol. 63 (1997) 3282-3285
25. Larkin M.J., Kulakov L.A., and Allen C.C.R. Biodegradation and Rhodococcus-masters of catabolic versatility. Curr. Opin. Biotechnol. 16 (2005) 282-290
26. Li T.L., Huang F.L., Haydock S.F., Mironenko T., Leadlay P.F., and Spencer J.B. Biosynthetic gene cluster of the glycopeptide antibiotic teicoplanin: characterization of two glycosyltransferases and the key acyltransferase. Chem. Biol. 11 (2004) 107-119
27. Meinhardt F., Schaffrath R., and Larsen M. Microbial linear plasmids. Appl. Microbiol. Biotechnol. 47 (1997) 329-336
28. Narikawa T., Karaki Y., Shinoyama H., and Fujii T. Rutin degradation by culture filtrates from penicillia. J. Jpn. Soc. Biosci. Biotechnol. Agrochem. 72 (1998) 473-479
29. Nawani N.N., and Kapadnis B.P. Chitin degrading potential of bacteria from extreme and moderate environment. Indian J. Exp. Biol. 41 (2003) 248-254
30. Overhage J., Sielker S., Homburg S., Parschat K., and Fetzner S. Identification of large linear plasmids in Arthrobacter spp. encoding the degradation of quinaldine to anthranilate. Microbiology 151 (2005) 491-500
31. Pallanza R., Berti M., Scotti R., Randisi E., and Arioli V. A-16686, a new antibiotic from Actinoplanes. II. Biological properties. J. Antibiot. 37 (1984) 318-324
32. Palleroni N.J. Genus Actinoplanes. In: Williams S.T., Sharpe M.E., and Holt J.G. (Eds). Bergey's Manual of Systematic Bacteriology vol. 4 (1989), Williams and Wilkins, Baltimore 2419-2428
33. Rao J.R., and Cooper J.E. Rhizobia catabolize nod gene-inducing flavonoids via C-ring fission mechanisms. J. Bacteriol. 176 (1994) 5409-5413
34. Redenbach M., Scheel J., and Schmidt U. Chromosome topology and genome size of selected actinomycetes species. Antonie van Leeuwenhoek 78 (2000) 227-235
35. Rose K., Tenberge K.B., and Steinbüchel A. Identification and characterization of genes from Streptomyces sp. strain K30 responsible for clear zone formation on natural rubber latex and poly(cis-1,4-isoprene) rubber degradation. Biomacromolecules 6 (2005) 180-188
36. Saeki H., Akira M., Furuhashi K., Averhoff B., and Gottschalk G. Degradation of trichloroethene by a linear-plasmid-encoded alkene monooxygenase in Rhodococcus corallinus (Nocardia corallina) B-276. Microbiology 145 (1999) 1721-1730
37. Schlegel H.G., Kaltwasser H., and Gottschalk G. Ein Submersverfahren zur Kultur wasserstoffoxydierender Bakterien-Wachstumsphysiologische Untersuchungen. Arch. Mikrobiol. 38 (1961) 209-222
38. Schoefer L., Mohan R., Schwiertz A., Braune A., and Blaut M. Anaerobic degradation of flavonoids by Clostridium orbiscindens. Appl. Environ. Microbiol. 69 (2003) 5849-5854
39. Shimizu S., Kobayashi H., Masai E., and Fukuda M. Characterization of the 450-kb linear plasmid in a polychlorinated biphenyl degrader, Rhodococcus sp. strain RHA1. Appl. Environ. Microbiol. 67 (2001) 2021-2028
40. Singh S.B., Zink D.L., Heimbach B., Genilloud O., Teran A., Silverman K.C., Lingham R.B., Felock P., and Hazuda D.J. Structure, stereochemistry, and biological activity of integramycin, a novel hexacyclic natural product produced by Actinoplanes sp. that inhibits HIV-1 integrase. Org. Lett. 4 (2002) 1123-1126
41. Survery S., Ahmad S., Subhan S.A., Ajaz M., and Rasool S.A. Hydrocarbon degrading bacteria from Pakistani soil: isolation, identification, screening and genetic studies. Pak. J. Biol. Sci. 7 (2004) 1518-1522
42. Vertesy L., Ehlers E., Kogler H., Kurz M., Meiwes J., Seibert G., Vogel M., and Hammann P. Friulimicins: Novel lipopeptide antibiotics with peptidoglycan synthesis inhibiting activity from Actinoplanes friuliensis sp. nov. II. Isolation and structural characterization. J. Antibiot. 53 (2000) 816-827
43. Volff J.N., and Altenbuchner J. A new beginning with new ends: linearisation of circular chromosomes during bacterial evolution. FEMS Microbiol. Lett. 186 (2000) 143-150
44. Warren R., Hsiao W.W.L., Kudo H., Myhre M., Dosanjh M., Petrescu A., Kobayashi H., Shimizu S., Miyauchi K., Masai E., Yang G., Stott J.M., Schein J.E., Shin H., Khattra J., Smailus D., Butterfield Y.S., Siddiqui A., Holt R., Marra M.A., Jones S.J.M., Mohn W.W., Brinkman F.S.L., Fukuda M., Davies J., and Eltis L.D. Functional characterization of a catabolic plasmid from polychlorinated-biphenyl-degrading Rhodococcus sp. strain RHA1. J. Bacteriol. 186 (2004) 7783-7795
45. Wehmeier U.F., and Piepersberg W. Biotechnology and molecular biology of the alpha-glucosidase inhibitor acarbose. Appl. Microbiol. Biotechnol. 63 (2004) 613-625
46. Westlake D.W.S., Talbot G., Blakley E.R., and Simpson F.J. Microbial decomposition of rutin. Can. J. Microbiol. 5 (1959) 621-629
47. Winter J., Moore L.H., Dowell Jr. V.R., and Bokkenheuser V.D. C-Ring cleavage of flavonoids by human intestinal bacteria. Appl. Environ. Microbiol. 55 (1989) 1203-1208
48. Wynands I., and van Pée K.-H. A novel halogenase gene from the pentachloropseudilin producer Actinoplanes sp. ATCC 33002 and detection of in vitro halogenase activity. FEMS Microbiol. Lett. 237 (2004) 363-367
49. Yang C.-C., Huang C.-H., Li C.-Y., Tsay Y.-G., Lee S.-C., and Chen C.W. The terminal proteins of linear Streptomyces chromosomes and plasmids: a novel class of replication priming proteins. Mol. Microbiol. 43 (2002) 297-305