Characterization of the cryptic plasmids of the Pseudomonas alcaligenes type strain

Plasmid

Volumn 37, Issue 3, 1997, Pages 189-198

  Charnock, Colin ^a  

^a UNIVERSITY OF OSLO   (Norway)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENETICS; BACTERIUM ISOLATION; CELL TRANSFORMATION; COLONY FORMATION; DNA STRAND; NONHUMAN; PLASMID; PSEUDOMONAS; REPLICON; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE;

EID: 0031149229     PISSN: 0147619X     EISSN: None     Source Type: Journal    
DOI: 10.1006/plas.1997.1282     Document Type: Article

References (33)

1. AB Biodisk (1980). PDM - The Paper Disc Methods -Laboratory Methods for the Rational Use of Antibiotics.
2. Blake, C. K., and Hegeman, G. D. (1987). Plasmid pCBI carries genes for anaerobic benzoate catabolism in Alcaligenes xylosoxidans subsp. denitrificans PN-1. J. Bacteriol. 169, 4878-4883.
3. Bramhill, D., and Kornberg, A. (1988). A model for initiation at the origins of DNA replication. Cell 54, 915-918.
4. Carney, B. F., Kröckel, L., Leary, J. V., and Focht, D. D. (1989). Identification of Pseudomonas alcaligenes chromosomal DNA in the plasmid DNA of the chlorobenzene-degrading recombinant of Pseudomonas putida strain CB1-9. Appl. Environ. Microbiol. 55, 1037-1039.
5. Casals, J. B., and Pringler, N. (1987). "Antimicrobial Sensitivity Testing Using NEO-SENSITABS®. ROSCO Diagnostica, Taastrup, Denmark.
6. Chakrabarty, A. M. (1976). Plasmids in Pseudomonas. Annu. Rev. Genet. 10, 7-30.
7. Clement, J-M., Perrin, D., and Hedgpeth, J. (1982). Analysis of λ receptor and β-lactamase synthesis and export using cloned genes in a minicell system. Mol. Gen. Genet. 185, 302-310.
8. Collins, C. H., and Lyne, P. M. (1976). "Microbiological Methods." Butterworths, London and Boston.
9. Dougan, G., and Sheratt, D. (1977). The transposon Tn1 as a probe for studying ColE1 Structure and Function. Mol. Gen. Genet. 151, 151-160.
10. Filutowicz, M., McEachern, M., Greener, A., Mukhopadhyay, P., Uhlenhopp, E., Durland, R., and Helinski, D. R. (1985). Role of the initiation protein and direct nucleotide sequence repeats in the regulation of plasmid R6K replication. In "Plasmids in Bacteria" (D. R. Helinski, S. N. Cohen, D. B. Clewell, D. A. Jackson, and A. Hollander, Eds.), pp. 125-140. Plenum, New York.
11. Frantz, B., and Chakrabarty, A. M. (1986). Degradative plasmids in Pseudomonas. In "The Bacteria: A Treatise on Structure and Function" (J. R. Sokatch, Ed.), Vol. X, pp. 295-323. Academic Press, Orlando, FL.
12. Fuller, R. S., Funell, B. E., and Kornberg, A. (1984). The DnaA protein complex with the Escherichia coli chromosomal replication origin (oriC) and other DNA sites. Cell 38, 889-990.
13. García de viedma, D., Giraldo, A., Ruiz-Echevarría, M. J., Lurz, R., and Díaz-Orejas, R. (1995a). Transcription of repA, the gene of the initiation protein of the Pseudomonas plasmid pPS10, is autoregulated by interactions of the RepA protein at a symmetrical operator. J. Mol. Biol. 247, 211-223.
14. García de viedma, D., Serrano-López, A., and Díaz-Orejas, R. (1995b). Specific binding of the replication protein of plasmid pPS10 to direct and inverted repeats is mediated by an HTH motif. Nucleic Acids Res. 23, 5048-5054.
15. García de viedma, D., Giraldo, R., Rívas, G., Fernandez-Tresguerres, M. E., and Díaz-Orejas, R. (1996). A leucine zipper motif determines different functions in a DNA replication protein. EMBO J. 15, 925-934.
16. Giraldo, R., Nieto, C., and Fernandez-Tresguerres, M. E., and Díaz, R. (1989). Bacterial zipper. Nature (London) 342, 866.
17. Govan, J. R. W. (1978). Pyocin typing of Pseudomonas aeruginosa. In "Methods in Microbiology" (T. Bergan, and J. R. Norris, Eds.), Vol. 10, pp. 61-91. Academic Press, London.
18. Hanahan, D. (1983). Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166, 557-580.
19. Harley, C. B., and Reynolds, R. P. (1987). Analysis of E. coli promoter sequences. Nucleic Acids Res. 15, 2343-2361.
20. Hugh, R., and Gilardi, D. L. (1980). Pseudomonas. In "Manual of Clinical Microbiology" (E. H. Lennette, A. Balows, W. J. Hausler, and J. P. Truant, Eds.), pp. 288-317. Am. Soc. Microbiol., Washington, DC.
21. Komai, Y., and Kosuge, T. (1980). Involvement of plasmid deoxyribonucleic acid in indolacetic acid synthesis in Pseudomonas savastanoi. J. Bacteriol. 143, 950-957.
22. Kröckel, L., and Focht, D. D. (1987). Construction of chlorobenzene-utilizing recombinants by progenetive manifestation of a rare event. App. Environ. Microbiol. 53, 2470-2475.
23. Macrina, F. L., Kopecko, D. J., Jones, K. R., Ayers, D. J., and McCowen, S. M. (1978). A multiple plasmid-containing Escherichia coli strain: convenient source of size reference plasmid molecules. Plasmid 1, 417-420.
24. Meulin, P., and Broda, P. (1982). Identification of chromosomally integrated TOL DNA in cured derivatives of Pseudomonas putida PAW1. J. Bacteriol. 152, 911-914.
25. Nieto, C., Fernandez-Tresguerres, E., Sanchez, N., Vicente, M., and Díaz, R. (1990). Cloning vectors derived from a naturally occuring plasmid of Pseudomonas savastanoi, specifically tailored for genetic manipulations in Pseudomonas. Gene 87, 145-149.
26. Nieto, C., Giraldo, R., Fernandez-Tresguerres, E., and Díaz, R. (1992). Genetic and functional analysis of the basic replicon of pPS10, a plasmid specific for Pseudomonas isolated from Pseudomonas syringae patovar savastanoi. J. Mol. Biol. 223, 415-426.
27. Palleroni, N. J., Kunisawa, R., Contopoulou, R., and Doudoroff, M. (1973). Nucleic acid homologies in the genus Pseudomonas. Int. J. Syst. Bacteriol. 23, 333-339.
28. Palleroni, N. J. (1984). Genus I. Pseudomonas. In "Bergey's Manual of Systematic Bacteriology" (N. R. Krieg, and J. G. Holt, Eds.), pp. 141-199. Williams & Wilkins, Baltimore.
29. Pitcher, D. G., Saunders, N. A., and Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett. Appl. Microbiol. 8, 151-156.
30. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning: A Laboratory Manual," 2nd ed. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
31. Sanger, F., Nicklen, S., and Coulson, R. A. (1977). DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463-5467.
32. Stoker, N. G., Pratt, J. M., and Holland, I. B. (1984). In vivo gene expression systems in prokaryotes. In "Transcription and Translation: A Practical Approach" (B. D. Haines and S. J. Higgins, Eds.), pp. 153-177. IRL Press, Oxford/Washington DC.
33. Yanisch-Perron, C., Vieira, J., and Messing, J. (1985). Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp 18 and pUC 19 vectors. Gene 33, 103-119.