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Volumn 10, Issue 2, 2006, Pages 97-104

Identification of genes regulated by changing salinity in the deep-sea bacterium Shewanella sp. WP3 using RNA arbitrarily primed PCR

Author keywords

Changing salinity; Differential expressed fragments; RAP PCR; Shewanella sp. WP3; Stress shock

Indexed keywords

SEA WATER; SODIUM CHLORIDE;

EID: 33645996304     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-005-0476-x     Document Type: Article
Times cited : (29)

References (43)
  • 1
    • 0037171156 scopus 로고    scopus 로고
    • Pressure effects on in vivo microbial processes
    • Bartlett DH (2002) Pressure effects on in vivo microbial processes. Biochim Biophys Acta 1595:367-381
    • (2002) Biochim Biophys Acta , vol.1595 , pp. 367-381
    • Bartlett, D.H.1
  • 2
    • 0036844248 scopus 로고    scopus 로고
    • Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis
    • Beckering CL, Steil L, Weber MH, Volker V, Marahiel MA (2002) Genomewide transcriptional analysis of the cold shock response in Bacillus subtilis. J Bacteriol 184:6395-6402
    • (2002) J Bacteriol , vol.184 , pp. 6395-6402
    • Beckering, C.L.1    Steil, L.2    Weber, M.H.3    Volker, V.4    Marahiel, M.A.5
  • 3
    • 0034123438 scopus 로고    scopus 로고
    • Analysis of the SOS response in Salmonella enterica serovar Typhimurium using RNA fingerprinting by arbitrarily primed PCR
    • Benson NR, Wong RM, McClelland M (2000) Analysis of the SOS response in Salmonella enterica serovar Typhimurium using RNA fingerprinting by arbitrarily primed PCR. J Bacteriol 182:3490-3497
    • (2000) J Bacteriol , vol.182 , pp. 3490-3497
    • Benson, N.R.1    Wong, R.M.2    McClelland, M.3
  • 4
    • 0038049073 scopus 로고    scopus 로고
    • Differential expression of genes influenced by changing salinity using RNA arbitrarily primed PCR in the archaeal halophile Haloferax volcanii
    • Bidle KA (2003) Differential expression of genes influenced by changing salinity using RNA arbitrarily primed PCR in the archaeal halophile Haloferax volcanii. Extremophles 7:1-7
    • (2003) Extremophles , vol.7 , pp. 1-7
    • Bidle, K.A.1
  • 5
    • 0028263532 scopus 로고
    • Accumulation of glutamate by Salmonella typhimurium in response to osmotic stress
    • Botsford JL, Alvarez M, Hernandez R, Nichols R (1994) Accumulation of glutamate by Salmonella typhimurium in response to osmotic stress. Appl Environ Microbiol 60:2568-2574
    • (1994) Appl Environ Microbiol , vol.60 , pp. 2568-2574
    • Botsford, J.L.1    Alvarez, M.2    Hernandez, R.3    Nichols, R.4
  • 7
    • 0034047378 scopus 로고    scopus 로고
    • Identification of Sinorhizobium meliloti genes regulated during symbiosis
    • Cabanes D, Boistard P, Batut J (2000) Identification of Sinorhizobium meliloti genes regulated during symbiosis. J Bacteriol 182:3632-3637
    • (2000) J Bacteriol , vol.182 , pp. 3632-3637
    • Cabanes, D.1    Boistard, P.2    Batut, J.3
  • 8
    • 0038120874 scopus 로고    scopus 로고
    • The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli
    • Charollais J, Pflieger D, Vinh J, Dreyfus M, Iost I (2003) The DEAD-box RNA helicase SrmB is involved in the assembly of 50S ribosomal subunits in Escherichia coli. Mol Microbiol 48:1253-1265
    • (2003) Mol Microbiol , vol.48 , pp. 1253-1265
    • Charollais, J.1    Pflieger, D.2    Vinh, J.3    Dreyfus, M.4    Iost, I.5
  • 9
    • 0034975961 scopus 로고    scopus 로고
    • The osmotic stress response and virulence in pyelonephritis isolates of Escherichia coli: Contributions of RpoS, ProP, ProU and other systems
    • Culham DE, Lu A, Jishage M, Krogfelt KA, Ishihama A, Wood JM (2001) The osmotic stress response and virulence in pyelonephritis isolates of Escherichia coli: contributions of RpoS, ProP, ProU and other systems. Microbiology 147:1657-1670
    • (2001) Microbiology , vol.147 , pp. 1657-1670
    • Culham, D.E.1    Lu, A.2    Jishage, M.3    Krogfelt, K.A.4    Ishihama, A.5    Wood, J.M.6
  • 10
    • 0343627931 scopus 로고    scopus 로고
    • Identification of saliva-regulated genes of Streptococcus gordonii DL1 by differential display using random arbitrarily primed PCR
    • Du LD, Kolenbrander PE (2000) Identification of saliva-regulated genes of Streptococcus gordonii DL1 by differential display using random arbitrarily primed PCR. Infect Immun 68:4834-4837
    • (2000) Infect Immun , vol.68 , pp. 4834-4837
    • Du, L.D.1    Kolenbrander, P.E.2
  • 11
    • 0036299641 scopus 로고    scopus 로고
    • Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes
    • Fisher MA, Plikaytis BB, Shinnick TM (2002) Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes. J Bacteriol 184:4025-4032
    • (2002) J Bacteriol , vol.184 , pp. 4025-4032
    • Fisher, M.A.1    Plikaytis, B.B.2    Shinnick, T.M.3
  • 13
    • 0031685978 scopus 로고    scopus 로고
    • Optimization of differential display of prokaryotic mRNA: Application to pure culture and soil microcosms
    • Fleming JT, Yao WH, Sayler GS (1998) Optimization of differential display of prokaryotic mRNA: application to pure culture and soil microcosms. Appl Environ Microbiol 64:3698-3706
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3698-3706
    • Fleming, J.T.1    Yao, W.H.2    Sayler, G.S.3
  • 14
    • 2942623607 scopus 로고    scopus 로고
    • Identification of differential gene expression in bacteria associated with coral black band disease by using RNA-arbitrarily primed PCR
    • Frias-Lopez J, Bonheyo GT, Fouke BW (2004) Identification of differential gene expression in bacteria associated with coral black band disease by using RNA-arbitrarily primed PCR. Appl Environ Microbiol 70:3687-3694
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3687-3694
    • Frias-Lopez, J.1    Bonheyo, G.T.2    Fouke, B.W.3
  • 16
    • 0032914867 scopus 로고    scopus 로고
    • Disaccharides as a new class of nonaccumulated osmoprotec-tants for Sinorhizobium meliloti
    • Gouffi K, Pica N, Pichereau V, Blanco C (1999) Disaccharides as a new class of nonaccumulated osmoprotec-tants for Sinorhizobium meliloti. Appl Environ Microbiol 65:1491-1500
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1491-1500
    • Gouffi, K.1    Pica, N.2    Pichereau, V.3    Blanco, C.4
  • 17
    • 0029744180 scopus 로고    scopus 로고
    • Cold shock stress-induced proteins in Bacillus subtilis
    • Graumann P, Schroder K, Schmid R, Marahiel MA (1996) Cold shock stress-induced proteins in Bacillus subtilis. J Bacteriol 178:4611-4619
    • (1996) J Bacteriol , vol.178 , pp. 4611-4619
    • Graumann, P.1    Schroder, K.2    Schmid, R.3    Marahiel, M.A.4
  • 18
    • 0022715061 scopus 로고
    • Assembly analysis of ribosomes from a mutant lacking the assembly-initiator protein L24: Lack of L24 induces temperature sensitivity
    • Herold M, Nowotny V, Dabbs ER, Nierhaus KH (1986) Assembly analysis of ribosomes from a mutant lacking the assembly-initiator protein L24: lack of L24 induces temperature sensitivity. Mol Gen Genet 203:281-287
    • (1986) Mol Gen Genet , vol.203 , pp. 281-287
    • Herold, M.1    Nowotny, V.2    Dabbs, E.R.3    Nierhaus, K.H.4
  • 19
    • 0035878729 scopus 로고    scopus 로고
    • FK506-binding protein of the hyperthermophilic archaeum Thermococcus sp KS-1, a cold-shock-inducible peptidyl-prolyl cis-trans isomerase with activities to trap and refold denatured proteins
    • Ideno A, Yoshida T, Iida T, Furutani M, Maruyama T (2001) FK506-binding protein of the hyperthermophilic archaeum Thermococcus sp KS-1, a cold-shock-inducible peptidyl-prolyl cis-trans isomerase with activities to trap and refold denatured proteins. Biochem J 357:465-471
    • (2001) Biochem J , vol.357 , pp. 465-471
    • Ideno, A.1    Yoshida, T.2    Iida, T.3    Furutani, M.4    Maruyama, T.5
  • 20
    • 0036684978 scopus 로고    scopus 로고
    • Isolation and characterization of the dcw cluster from the piezophilic deep-sea bacterium Shewanella violacea
    • Ishii A, Nakasone K, Sato T, Wachi M, Sugai M, Nagai K, Kato C (2002) Isolation and characterization of the dcw cluster from the piezophilic deep-sea bacterium Shewanella violacea. J Biochem 132:183-188
    • (2002) J Biochem , vol.132 , pp. 183-188
    • Ishii, A.1    Nakasone, K.2    Sato, T.3    Wachi, M.4    Sugai, M.5    Nagai, K.6    Kato, C.7
  • 21
    • 0030973119 scopus 로고    scopus 로고
    • Trigger factor induced upon cold shock and enhances viability of Escherichia coli at low temperature
    • USA
    • Kandror O, Goldberg AL (1997) Trigger factor induced upon cold shock and enhances viability of Escherichia coli at low temperature. Proc Natl Acad Sci USA 94:4978-4981
    • (1997) Proc Natl Acad Sci , vol.94 , pp. 4978-4981
    • Kandror, O.1    Goldberg, A.L.2
  • 22
    • 0008105167 scopus 로고    scopus 로고
    • Barophiles (Piezophiles)
    • Horikoshi K, Tsujii (eds). Springer-Verlag, Tokyo
    • Kato C (1999) Barophiles (Piezophiles). In: Horikoshi K, Tsujii (eds) Extremophiles in deep-sea environments. Springer-Verlag, Tokyo, pp 91-111
    • (1999) Extremophiles in Deep-sea Environments , pp. 91-111
    • Kato, C.1
  • 23
    • 0035060886 scopus 로고    scopus 로고
    • Correlation between phylogenetic structure and function examples from deep-sea Shewanella
    • Kato C, Nogi Y (2001) Correlation between phylogenetic structure and function examples from deep-sea Shewanella. FEMS Microbiol Ecol 35:223-230
    • (2001) FEMS Microbiol Ecol , vol.35 , pp. 223-230
    • Kato, C.1    Nogi, Y.2
  • 24
    • 0037106458 scopus 로고    scopus 로고
    • Lipid modification of proteins in Archaea: Attachment of a mevalonic acidbased lipid moiety to the surface-layer glycoprotein of Haloferax volcanii follows protein translocation
    • Konrad Z, Eichler J (2002) Lipid modification of proteins in Archaea: attachment of a mevalonic acidbased lipid moiety to the surface-layer glycoprotein of Haloferax volcanii follows protein translocation. Biochem J 366:959-964
    • (2002) Biochem J , vol.366 , pp. 959-964
    • Konrad, Z.1    Eichler, J.2
  • 25
    • 0029146185 scopus 로고
    • Hsc66, an Hsp70 homology in Escherichia coli, is induced by cold shock but not heat shock
    • Lelivelt MJ, Kawula TH (1995) Hsc66, an Hsp70 homology in Escherichia coli, is induced by cold shock but not heat shock. J Bacteriol 177:4900-4907
    • (1995) J Bacteriol , vol.177 , pp. 4900-4907
    • Lelivelt, M.J.1    Kawula, T.H.2
  • 26
    • 0345357141 scopus 로고    scopus 로고
    • Solute accumulation in the deep-sea bacterium Photobacterium profundum
    • Martin DD, Bartlett DH, Roberts MF (2002) Solute accumulation in the deep-sea bacterium Photobacterium profundum. Extremophiles 6:507-514
    • (2002) Extremophiles , vol.6 , pp. 507-514
    • Martin, D.D.1    Bartlett, D.H.2    Roberts, M.F.3
  • 27
    • 0023781840 scopus 로고
    • Glycine betaine reverses the effects of osmotic stress on DNA replication and cellular division in Escherichia coli
    • Meury J (1988) Glycine betaine reverses the effects of osmotic stress on DNA replication and cellular division in Escherichia coli. Arch Microbiol 149:232-239
    • (1988) Arch Microbiol , vol.149 , pp. 232-239
    • Meury, J.1
  • 28
    • 0030931683 scopus 로고    scopus 로고
    • Osmotically induced response in representatives of halophilic prokaryotes: The bacterium Halomonas elongata and the Archaeon Haloferax volcanii
    • Mojica FJ, Cisneros E, Ferrer C, Rodriguez-Valera F, Juez G (1997) Osmotically induced response in representatives of halophilic prokaryotes: the bacterium Halomonas elongata and the Archaeon Haloferax volcanii. J Bacteriol 179:5471-5481
    • (1997) J Bacteriol , vol.179 , pp. 5471-5481
    • Mojica, F.J.1    Cisneros, E.2    Ferrer, C.3    Rodriguez-Valera, F.4    Juez, G.5
  • 29
    • 0032930553 scopus 로고    scopus 로고
    • Reduction of false positives in prokaryotic mRNA differential display
    • Nagel A, Fleming JT, Sayler GS (1999) Reduction of false positives in prokaryotic mRNA differential display. Biotechniques 26:641-643
    • (1999) Biotechniques , vol.26 , pp. 641-643
    • Nagel, A.1    Fleming, J.T.2    Sayler, G.S.3
  • 30
    • 0032988623 scopus 로고    scopus 로고
    • Analysis of cis-elements upstream of the pressure-regulated operon in the deep-sea barophilic bacterium Shewanella violacea strain DSS12
    • Nakasone K, Ikegami A, Kato C, Usami R, Horikoshi K (1999) Analysis of cis-elements upstream of the pressure-regulated operon in the deep-sea barophilic bacterium Shewanella violacea strain DSS12. FEMS Microbiol Lett 176:351-356
    • (1999) FEMS Microbiol Lett , vol.176 , pp. 351-356
    • Nakasone, K.1    Ikegami, A.2    Kato, C.3    Usami, R.4    Horikoshi, K.5
  • 31
    • 0036545609 scopus 로고    scopus 로고
    • Transcriptional regulation under pressure conditions by RNA polymerase 54 factor with a two-component regulatory system in Shewanella violacea
    • Nakasone K, Ikegami A, Kawano H, Kato C, Usami R, Horikoshi K (2002) Transcriptional regulation under pressure conditions by RNA polymerase 54 factor with a two-component regulatory system in Shewanella violacea. Extremophiles 6:89-95
    • (2002) Extremophiles , vol.6 , pp. 89-95
    • Nakasone, K.1    Ikegami, A.2    Kawano, H.3    Kato, C.4    Usami, R.5    Horikoshi, K.6
  • 32
    • 0011133429 scopus 로고
    • In vitro reconstitution of osmoregulated expression of proU of Escherichia coli
    • USA
    • Ramirez RM, Prince WS, Bremer E, Villarejo M (1989) In vitro reconstitution of osmoregulated expression of proU of Escherichia coli. Proc Natl Acad Sci USA 86:1153-1157
    • (1989) Proc Natl Acad Sci , vol.86 , pp. 1153-1157
    • Ramirez, R.M.1    Prince, W.S.2    Bremer, E.3    Villarejo, M.4
  • 33
    • 0028944994 scopus 로고
    • Heterogeneity in molecular recognition by restriction endonucleases: Osmotic and hydrostatic pressure effects on BamHI, Pvu II, and EcoRV specificity
    • USA
    • Robinson CR, Sligar SG (1995) Heterogeneity in molecular recognition by restriction endonucleases: osmotic and hydrostatic pressure effects on BamHI, Pvu II, and EcoRV specificity. Proc Natl Acad Sci USA 92:3444-3448
    • (1995) Proc Natl Acad Sci , vol.92 , pp. 3444-3448
    • Robinson, C.R.1    Sligar, S.G.2
  • 34
    • 0022427177 scopus 로고
    • Osmotic stress dramatically inhibits active transport of carbonhydrates by Escherichia coli
    • Roth WG, Leckie MP, Dietzler DN (1985) Osmotic stress dramatically inhibits active transport of carbonhydrates by Escherichia coli. Biochem Biophys Res Commun 126:434-441
    • (1985) Biochem Biophys Res Commun , vol.126 , pp. 434-441
    • Roth, W.G.1    Leckie, M.P.2    Dietzler, D.N.3
  • 35
    • 0033763135 scopus 로고    scopus 로고
    • Polyamine transport and role of potE in response to osmotic stress in Escherichia coli
    • Schiller D, Kruse D, Kneifel H, Kramer R, Burkovski A (2000) Polyamine transport and role of potE in response to osmotic stress in Escherichia coli. J Bacteriol 182:6247-6249
    • (2000) J Bacteriol , vol.182 , pp. 6247-6249
    • Schiller, D.1    Kruse, D.2    Kneifel, H.3    Kramer, R.4    Burkovski, A.5
  • 38
    • 0021712773 scopus 로고
    • Cell wall and phospholipid composition and their contribution to the salt tolerance of Halomonas elongate
    • Vreeland RH, Anderson R, Murray RG (1984) Cell wall and phospholipid composition and their contribution to the salt tolerance of Halomonas elongate. J Bacteriol 160:879-883
    • (1984) J Bacteriol , vol.160 , pp. 879-883
    • Vreeland, R.H.1    Anderson, R.2    Murray, R.G.3
  • 39
    • 16544391474 scopus 로고    scopus 로고
    • Isolation of extremophiles with the detection and retrieval of Shewanella strains in deep sea sediments from the west Pacific
    • Wang F, Wang P, Chen M, Xiao X (2004) Isolation of extremophiles with the detection and retrieval of Shewanella strains in deep sea sediments from the west Pacific. Extremophiles 8:165-168
    • (2004) Extremophiles , vol.8 , pp. 165-168
    • Wang, F.1    Wang, P.2    Chen, M.3    Xiao, X.4
  • 40
    • 0036667444 scopus 로고    scopus 로고
    • The cold-inducible icl gene encoding thermolable isocitrate lyase of a psychrophilic bacterium, Colwellia maris
    • Watanabe S, Yamaoka N, Takada Y, Fukunaga N (2002) The cold-inducible icl gene encoding thermolable isocitrate lyase of a psychrophilic bacterium, Colwellia maris. Microbiology 148:2579-2589
    • (2002) Microbiology , vol.148 , pp. 2579-2589
    • Watanabe, S.1    Yamaoka, N.2    Takada, Y.3    Fukunaga, N.4
  • 42
    • 0030002132 scopus 로고    scopus 로고
    • Glutamate is required to maintain the steady-state potassium pool in Salmonella typhimurium
    • USA
    • Yan D, Ikeda TP, Shauger AE, Kustu S (1996) Glutamate is required to maintain the steady-state potassium pool in Salmonella typhimurium. Proc Natl Acad Sci USA 93:6527-6531
    • (1996) Proc Natl Acad Sci , vol.93 , pp. 6527-6531
    • Yan, D.1    Ikeda, T.P.2    Shauger, A.E.3    Kustu, S.4
  • 43
    • 0011058491 scopus 로고
    • Coupling device for quick high-pressure connections to 100 MPa
    • Yayanos AA, Dietz AS (1982) Coupling device for quick high-pressure connections to 100 MPa. Rev Sci Instrum 53:704-705
    • (1982) Rev Sci Instrum , vol.53 , pp. 704-705
    • Yayanos, A.A.1    Dietz, A.S.2


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