메뉴 건너뛰기




Volumn 13, Issue 2, 2006, Pages 463-480

Modeling the combinatorial functions of multiple transcription factors

Author keywords

Combinatorial function; Gene regulation

Indexed keywords

TRANSCRIPTION FACTOR;

EID: 33645977192     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2006.13.463     Document Type: Conference Paper
Times cited : (9)

References (21)
  • 1
    • 0028363566 scopus 로고
    • INO2 and INO4 gene products, positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae, form a complex that binds to the INO1 promoter
    • Ambroziak, J., and Henry, S.A. 1994. INO2 and INO4 gene products, positive regulators of phospholipid biosynthesis in Saccharomyces cerevisiae, form a complex that binds to the INO1 promoter. J. Biol. Chem. 269(21), 15344-15349.
    • (1994) J. Biol. Chem. , vol.269 , Issue.21 , pp. 15344-15349
    • Ambroziak, J.1    Henry, S.A.2
  • 2
    • 0032446353 scopus 로고    scopus 로고
    • Differential regulation of transcription: Repression by unactivated mitogen-activated protein kinase Kssl requires Dig1 and Dig2 proteins
    • Bardwell, L., Cook, J.G., Zhu-Shimoni, J.X., Voora, D., and Thorner, J. 1998. Differential regulation of transcription: Repression by unactivated mitogen-activated protein kinase Kssl requires Dig1 and Dig2 proteins. PNAS 95(26), 15400-15405.
    • (1998) PNAS , vol.95 , Issue.26 , pp. 15400-15405
    • Bardwell, L.1    Cook, J.G.2    Zhu-Shimoni, J.X.3    Voora, D.4    Thorner, J.5
  • 4
    • 0033707946 scopus 로고    scopus 로고
    • Using Bayesian networks to analyze expression data
    • Friedman, N., Linial, M., Nachman, I., and Pe'er, D. 2000. Using Bayesian networks to analyze expression data. J. Comp. Biol. 7, 601-620.
    • (2000) J. Comp. Biol. , vol.7 , pp. 601-620
    • Friedman, N.1    Linial, M.2    Nachman, I.3    Pe'er, D.4
  • 5
    • 0038048325 scopus 로고    scopus 로고
    • Inferring genetic networks and identifying compound mode of action via expression profiling
    • Gardner, T.S., di Bernardo, D., Lorenz, D., and Collins, J.J. 2003. Inferring genetic networks and identifying compound mode of action via expression profiling. Science 301, 102-105.
    • (2003) Science , vol.301 , pp. 102-105
    • Gardner, T.S.1    Di Bernardo, D.2    Lorenz, D.3    Collins, J.J.4
  • 7
    • 0035221560 scopus 로고    scopus 로고
    • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks
    • Hartemink, A.J., Gifford, D.K., Jaakkola, T.S., and Young, R.A. 2001. Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks. PSB, 422-433.
    • (2001) PSB , pp. 422-433
    • Hartemink, A.J.1    Gifford, D.K.2    Jaakkola, T.S.3    Young, R.A.4
  • 8
    • 0034616930 scopus 로고    scopus 로고
    • Functional discovery via a compendium of expression profiles
    • Hughes, T.R., Marton, M.J., Jones, A.R., Roberts, C.J., Stoughton, R., et al. 2000. Functional discovery via a compendium of expression profiles. Cell 102, 109-126.
    • (2000) Cell , vol.102 , pp. 109-126
    • Hughes, T.R.1    Marton, M.J.2    Jones, A.R.3    Roberts, C.J.4    Stoughton, R.5
  • 9
    • 0033523113 scopus 로고    scopus 로고
    • YAP1 and SKN7 control two specialized oxidative stress response regulons in yeast
    • Lee, J., Godon, C., Lagniel, G., Spector, D., Garin, J., Labarre, J., and Toledano, M.B. 1999. YAP1 and SKN7 control two specialized oxidative stress response regulons in yeast. J. Biol. Chem. 274(23), 16040-16046.
    • (1999) J. Biol. Chem. , vol.274 , Issue.23 , pp. 16040-16046
    • Lee, J.1    Godon, C.2    Lagniel, G.3    Spector, D.4    Garin, J.5    Labarre, J.6    Toledano, M.B.7
  • 10
    • 0037174671 scopus 로고    scopus 로고
    • A transcriptional regulatory network map for Saccharomyces cerevisiae
    • Lee, T., Rinaldi, N.J., Robert, F., Odom, D.T., Bar-Joseph, Z., et al. 2002. A transcriptional regulatory network map for Saccharomyces cerevisiae. Science 298, 799-804.
    • (2002) Science , vol.298 , pp. 799-804
    • Lee, T.1    Rinaldi, N.J.2    Robert, F.3    Odom, D.T.4    Bar-Joseph, Z.5
  • 11
    • 0028795797 scopus 로고
    • Cloning of yeast HAP5: A novel subunit of a heterotrimeric complex required for CCAAT binding
    • McNabb, D.S., Xing, Y., and Guarente, L. 1995. Cloning of yeast HAP5: A novel subunit of a heterotrimeric complex required for CCAAT binding. Genes Development 9(1), 47-58.
    • (1995) Genes Development , vol.9 , Issue.1 , pp. 47-58
    • McNabb, D.S.1    Xing, Y.2    Guarente, L.3
  • 12
    • 0034785443 scopus 로고    scopus 로고
    • Identifying regulatory networks by combinatorial analysis of promoter elements
    • Pilpel, Y., Sudarsanam, P., and Church, G.M. 2001. Identifying regulatory networks by combinatorial analysis of promoter elements. Nature Genet. 29, 153-159.
    • (2001) Nature Genet. , vol.29 , pp. 153-159
    • Pilpel, Y.1    Sudarsanam, P.2    Church, G.M.3
  • 13
    • 0036376097 scopus 로고    scopus 로고
    • From promoter sequence to expression: A probabilistic framework
    • Segal, E., Barash, Y., Simon, I., Friedman, N., and Koller, D. 2002. From promoter sequence to expression: A probabilistic framework. RECOMB, 263-272.
    • (2002) RECOMB , pp. 263-272
    • Segal, E.1    Barash, Y.2    Simon, I.3    Friedman, N.4    Koller, D.5
  • 14
    • 0037941585 scopus 로고    scopus 로고
    • Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data
    • Segal, E., Shapira, M., Regev, A., Pe'er, D., Botstein, D., Koller, D., and Friedman, N. 2003. Module networks: Identifying regulatory modules and their condition-specific regulators from gene expression data. Nature Genet. 34(2), 166-176.
    • (2003) Nature Genet. , vol.34 , Issue.2 , pp. 166-176
    • Segal, E.1    Shapira, M.2    Regev, A.3    Pe'er, D.4    Botstein, D.5    Koller, D.6    Friedman, N.7
  • 15
    • 0022429106 scopus 로고
    • The or control system of bacteriophage lambda: A physical-chemical model for gene regulation
    • Shea, M.A., and Ackers, G.K. 1985. The OR control system of bacteriophage lambda: A physical-chemical model for gene regulation. J. Mol. Biol. 181, 211-230.
    • (1985) J. Mol. Biol. , vol.181 , pp. 211-230
    • Shea, M.A.1    Ackers, G.K.2
  • 16
    • 0035131692 scopus 로고    scopus 로고
    • A positive regulator of mitosis, Sok2, functions as a negative regulator of meiosis in Saccharomyces cerevisiae
    • Shenhar, G., and Kassir, Y. 2001. A positive regulator of mitosis, Sok2, functions as a negative regulator of meiosis in Saccharomyces cerevisiae. Cellular Biol. 21(5), 1603-1612.
    • (2001) Cellular Biol. , vol.21 , Issue.5 , pp. 1603-1612
    • Shenhar, G.1    Kassir, Y.2
  • 17
    • 17944372930 scopus 로고    scopus 로고
    • Serial regulation of transcriptional regulators in the yeast cell cycle
    • Simon, I., Barnett, J., Hannet, N., Harbison, C.T., Rinaldi, N.J., et al. 2001. Serial regulation of transcriptional regulators in the yeast cell cycle. Cell 106, 697-708.
    • (2001) Cell , vol.106 , pp. 697-708
    • Simon, I.1    Barnett, J.2    Hannet, N.3    Harbison, C.T.4    Rinaldi, N.J.5
  • 18
    • 0037509648 scopus 로고    scopus 로고
    • Computational expansion of genetic networks
    • Tanay, A., and Shamir, R. 2001. Computational expansion of genetic networks. Bioinformatics 17(Suppl. 1), S270-S278.
    • (2001) Bioinformatics , vol.17 , Issue.SUPPL. 1
    • Tanay, A.1    Shamir, R.2
  • 19
    • 10744230485 scopus 로고    scopus 로고
    • Global mapping of the yeast genetic interaction network
    • Tong, A.H., Lesage, G., Bader, G.D., Ding, H., et al. 2004. Global mapping of the yeast genetic interaction network. Science 303, 808-813.
    • (2004) Science , vol.303 , pp. 808-813
    • Tong, A.H.1    Lesage, G.2    Bader, G.D.3    Ding, H.4
  • 21
    • 0032549745 scopus 로고    scopus 로고
    • Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene
    • Yuh, C.H., Bolouri, H., and Davidson, E.H. 1998. Genomic cis-regulatory logic: Experimental and computational analysis of a sea urchin gene. Science 279, 1896-1902.
    • (1998) Science , vol.279 , pp. 1896-1902
    • Yuh, C.H.1    Bolouri, H.2    Davidson, E.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.