Identification and full sequence of an isolate of Alternanthera mosaic potexvirus infecting Phlox stolonifera

Archives of Virology

Volumn 151, Issue 3, 2006, Pages 477-493

  Hammond, J ^a   Reinsel, M D ^a   Maroon Lango, C J ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED RNA POLYMERASE; VIRUS RNA;

AMARANTHACEAE; AMINO ACID SEQUENCE; ANGIOSPERM; ARTICLE; CLASSIFICATION; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR CLONING; MOLECULAR GENETICS; MOSAIC VIRUS; NUCLEOTIDE SEQUENCE; PATHOGENICITY; PHYLOGENY; PLANT DISEASE; POTEXVIRUS; SEQUENCE HOMOLOGY; VIROLOGY; VIRUS GENOME;

AMARANTHACEAE; AMINO ACID SEQUENCE; ANGIOSPERMS; BASE SEQUENCE; CLONING, MOLECULAR; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; MOSAIC VIRUSES; PHYLOGENY; PLANT DISEASES; POTEXVIRUS; RNA REPLICASE; RNA, VIRAL; SEQUENCE HOMOLOGY, AMINO ACID;

ALTERNANTHERA; CARICA PAPAYA; CLOVER YELLOW MOSAIC VIRUS; MUSA X PARADISIACA; PAPAYA MOSAIC VIRUS; PHLOX; PHLOX STOLONIFERA; PORTULACA; PORTULACA GRANDIFLORA; PORTULACACEAE; POTATO AUCUBA MOSAIC VIRUS; POTATO VIRUS X; POTEXVIRUS; SOLANUM TUBEROSUM; TRIFOLIUM;

EID: 33645843896     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-005-0646-2     Document Type: Article

References (37)

1. MJ Adams JF Antoniw M Bar-Joseph AA Brunt T Candresse GD Foster GP Martelli RG Milne SK Zavriev CM Fauquet 2004 The new plant virus family Flexiviridae and assessment of molecular criteria for species demarcation. Arch Virol 149 1045 1060
2. SF Altschul TL Madden AA Schaffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 3389 3402
3. Atabekov JG (1995) Genus Potexvirus. In: Murphy FA, Fauquet CM, Bishop DHL, Ghabrial SA, Jarvis AW, Martelli GP, Mayo MA, Summers MD (eds) Virus taxonomy: Sixth Report of the International Committee on Taxonomy of Viruses. Springer, Wien New York, pp 479-482
4. JB Bancroft R Rouleau R Johnston L Prins GA Mackie 1991 The entire nucleotide sequence of foxtail mosaic virus RNA. J Gen Virol 72 2173 2181
5. S Chang J Puryear J Cairney 1993 A simple and efficient method for isolating RNA from pine trees. Plant Mol Biol Reptr 11 113 116
6. Christie RG, Edwardson JR (1977) Light and electron microscopy of plant virus inclusions. Fla Agric Exp Stn Monogr No. 9
7. M Ciuffo M Turina 2004 A potexvirus related to Papaya mosaic virus isolated from moss rose (Portulaca grandiflora) in Italy. Plant Pathol 53 515
8. VV Dolja VP Boyko AA Agranovsky EV Koonin 1991 Phylogeny of capsid proteins of rod-shaped and filamentous RNA plant viruses: Two families with distinct patterns of sequence and probably structure conservation. Virology 184 79 86
9. VV Dolja DP Grama D Morosov S Yu JG Atebekov 1987 Potato virus X-related single and double-stranded RNAs. Characterization and identification of terminal structures. FEBS Lett 214 308 312
10. Felsenstein J (1993) PHYLIP: Phylogeny Inference Package (ver 3.5c). Distributed by the author. Department of Genetics, University of Washington, Seattle
11. RLS Forster DL Beck PJ Guilford DM Voot CJ van Dolleweerd MT Andersen 1992 The coat protein of white clover mosaic potexvirus has a role in facilitating cell-to-cell transport in plants. Virology 191 480 484
12. ADW Geering JE Thomas 1999 Characterization of a virus from Australia that is closely related to papaya mosaic potexvirus. Arch Virol 144 577 592
13. D Güssow T Clackson 1989 Direct clone characterization from plaques and colonies by the polymerase chain reaction. Nucleic Acids Res 17 4000
14. Hammond J (1990) Western blotting and the use of membranes to absorb antisera and to purify antibodies. In: Hampton RO, Ball EM, DeBoer S (eds) Serological detection and identification of plant viral and bacterial pathogens; A Laboratory Manual. APS Press, St. Paul, MN, pp 269-279
15. J Hammond R Hull 1981 Plantain virus X: A new potexvirus from Plantago lanceolata. J Gen Virol 54 75 90
16. J Hammond RL Jordan RC Larsen JW Moyer 1992 Use of polyclonal antisera and monoclonal antibodies to examine serological relationships among three filamentous viruses of sweetpotato. Phytopathology 82 713 717
17. J Hammond RH Lawson 1988 An improved purification procedure for preparing potyviruses and cytoplasmic inclusion proteins from the same tissue. J Virol Methods 20 203 217
18. J Hammond MD Reinsel CJM Maroon-Lango 2003 Partial characterization and full sequence of a potexvirus from creeping phlox (Phlox stolonifera). Phytopathology 93 6 S32
19. J Hammond MD Reinsel CJ Maroon-Lango 2004 Identification of potexvirus isolates from phlox and portulaca as strains of Alternanthera mosaic virus, and comparison of the genomic 3′ region. Phytopathology 94 6 S38
20. Hammond J, Reinsel MD, Maroon-Lango CJ (2005) Identification of potexvirus isolates from creeping phlox and trailing portulaca as strains of Alternanthera mosaic virus, and comparison of the 3′-terminal portion of the viral genomes. Acta Hort (in press)
21. R Jordan J Hammond 1991 Comparison and differentiation of potyvirus isolates and identification of strain-, virus-, subgroup-specific and potyvirus group-common epitopes using monoclonal antibodies. J Gen Virol 72 25 36
22. CP Joshi 1987 An inspection of the domain between putative TATA box and translation start site in 79 plant genes. Nucleic Acids Res 15 6643 6653
23. M Kozak 1984 Compilation and analysis of sequences upstream from the translational start site in eukaryotic mRNAs. Nucleic Acids Res 12 857 872
24. HA Lutcke KC Chow FS Mickel KA Moss HF Kern GA Scheele 1987 Selection of AUG initiation codons differs in plants and animals. EMBO J 6 43 48
25. CJ Maroon-Lango MA Guaragna RL Jordan J Hammond M Bandla SK Marquardt 2005 Two unique US isolates of Pepino mosaic virus from a limited source of pooled tomato tissue are distinct from a third (European-like) US isolate. Arch Virol 150 1187 1201
26. SYu Morosov AG Solovyev 2003 Triple gene block: modular design of a multifunctional machine for plant virus movement. J Gen Virol 84 1351 1366
27. SYu Morosov NA Miroshnichenko AG Solovyev ON Fedorkin DA Zelenina LI Lukasheva AV Karasev VV Dolja JG Atabekov 1991 Expression strategy of the potato virus X triple gene block. J Gen Virol 72 2039 2042
28. E Myers W Miller 1989 Optimal alignments in linear space. CABIOS 4 11 17
29. RDM Page 1996 TREEVIEW: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12 357 358
30. Roche Molecular Biochemicals (2000) DIG Application Manual for Filter Hybridization. Mannheim, Germany
31. TL Sit MG AbouHaidar S Holy 1989 Nucleotide sequence of papaya mosaic virus RNA. J Gen Virol 70 2325 2331
32. AG Solovyev EI Savenkov AA Agranovsky SYu Morosov 1996 Comparisons of the genomic cis-elements and coding regions in RNAβ components of the hordeiviruses Barley stripe mosaic virus, Lychnis ringspot virus, and Poa semi-latent virus. Virology 219 9 18
33. A Tamai T Meshi 2001 Cell-to-cell movement of Potato virus X: the role of p12 and p8 encoded by the second and third open reading frames of the triple gene block. Mol Plant-Microbe Interact 14 1158 1167
34. JD Thompson DG Higgins TJ Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 4673 4680
35. J Verchot SM Angell DC Baulcombe 1998 In vivo translation of the triple gene block of potato virus X requires two subgenomic mRNAs. J Virol 72 8316 8320
36. H Xu D Leclerc B Leung MG Abou Haidar 1994 The entire nucleotide sequence and genomic organization of potato aucuba mosaic potexvirus. Arch Virol 135 461 469
37. Y Yamaji S Kagiwada H Nakabayashi M Ugaki S Namba 2001 Complete nucleotide sequence of Tulip virus X (TVX-J): the border between species and strains within the genus Potexvirus. Arch Virol 146 2309 2320