Developing an algorithm of informative markers for evaluation of chimerism after allogeneic bone marrow transplantation

Bone Marrow Transplantation

Volumn 37, Issue 8, 2006, Pages 751-755

  Sellathamby, S ^a   Balasubramanian, P ^a   Sivalingam, S ^a   Shaji, R V ^a   Mathews, V ^a   George, B ^a   Viswabandya, A ^a   Srivastava, A ^a   Chandy, M ^a  

^a CHRISTIAN MEDICAL COLLEGE   (India)

Author keywords

Chimeirism; Informativeness; STRs

Indexed keywords

AMELOGENIN; APOLIPOPROTEIN; BETA ACTIN; BETA GLOBIN; BLOOD CLOTTING FACTOR 8; MOLECULAR MARKER; TYROSINE 3 MONOOXYGENASE; VON WILLEBRAND FACTOR;

ALGORITHM; ALLOGENIC BONE MARROW TRANSPLANTATION; ARTICLE; CHIMERA; DONOR; FORENSIC SCIENCE; GENE FREQUENCY; HETEROZYGOTE; HLA MATCHING; HUMAN; INDIAN; MAJOR CLINICAL STUDY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTO ONCOGENE; PSEUDOGENE; SHORT TANDEM REPEAT; SIBLING; VARIABLE NUMBER OF TANDEM REPEAT;

ALGORITHMS; BIOLOGICAL MARKERS; BONE MARROW TRANSPLANTATION; DNA; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; EVALUATION STUDIES; GLOBINS; HETEROZYGOTE; HISTOCOMPATIBILITY; HLA ANTIGENS; HUMANS; MICROSATELLITE REPEATS; POLYMERASE CHAIN REACTION; POLYMORPHISM, GENETIC; RECOMBINANT FUSION PROTEINS; RETROSPECTIVE STUDIES; STEM CELL TRANSPLANTATION; TEMPERATURE; TIME FACTORS; TRANSPLANTATION CHIMERA; TRANSPLANTATION, HOMOLOGOUS;

EID: 33645717353     PISSN: 02683369     EISSN: 14765365     Source Type: Journal    
DOI: 10.1038/sj.bmt.1705317     Document Type: Article

References (25)

1. Hammond HA, Jin L, Zhong Y, Caskey CT, Chakraborty R. Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am J Hum Genet 1994; 55: 175-189.
2. Rowold DJ, Herrera RJ. Inferring recent human phylogenies using forensic STR technology. Forensic Sci Int 2003; 133: 260-265.
3. Bryant E, Martin PJ. Documentation of engraftment and characterization of chimerism following hematopoietic cell transplantation. In: Thomas ED, Blume KG, Forman SJ (eds). Hematopoietic Cell Transplantation. Blackwell Science: Oxford, London, 1999, pp 197-206.
4. Polymeropoulos MH, Rath DS, Xiao H, Merril CR. Tetranucleotide repeat polymorphism at the human c-fes/fps protooncogene (FES). Nucleic Acids Res 1991; 19: 4018.
5. Kimpton CP, Gill P, Walton A, Urquhart A, Millican ES, Adams M. Automated DNA profiling employing multiplex amplification of short tandem repeat loci. PCR Meth Appl 1993; 3: 13-22.
6. Polymeropoulos MH, Rath DS, Xiao H, Merril CR. Tetranucleotide repeat polymorphism at the human beta-actin related pseudogene H-beta-Ac-psi-2 (ACTBP2). Nucleic Acids Res 1992; 20: 1432.
7. Peake IR, Bowen D, Bignell P, Liddell MB, Sadler JE, Standen G et al. Family studies and prenatal diagnosis in severe von Willebrand disease by polymerase chain reaction amplification of a variable number tandem repeat region of the von Willebrand factor gene. Blood 1990; 76: 555-561.
8. Ghanem N, Girodon E, Vidaud M, Martin J, Fanen P, Plassa F et al. A comprehensive scanning method for rapid detection of beta-globin gene mutations and polymorphisms. Hum Mutat 1992; 1: 229-239.
9. Schichman SA, Suess P, Vertino AM, Gray PS. Comparison of short tandem repeat and variable number tandem repeat genetic markers for quantitative determination of allogeneic bone marrow transplant engraftment. Bone Marrow Transplant 2002; 29: 243-248.
10. Ginsburg D, Antin JH, Smith BR, Orkin SH, Rappeport JM. Origin of cell populations after bone marrow transplantation. Analysis using DNA sequence polymorphisms. J Clin Invest 1985; 75: 596-603.
11. Knowlton RG, Brown VA, Braman JC, Barker D, Schumm JW, Murray C et al. Use of highly polymorphic DNA probes for genotypic analysis following bone marrow transplantation. Blood 1986; 68: 378-385.
12. Thein SL, Jeffreys AJ, Blacklock HA. Identification of posttransplant cell population by DNA fingerprint analysis. Lancet 1986; 2: 37.
13. Lawler M, Humphries P, McCann SR. Evaluation of mixed chimerism by in vitro amplification of dinucleotide repeat sequences using the polymerase chain reaction. Blood 1991; 77: 2504-2514.
14. Ugozzoli L, Yam P, Petz LD, Ferrara GB, Champlin RE, Forman SJ et al. Amplification by the polymerase chain reaction of hypervariable regions of the human genome for evaluation of chimerism after bone marrow transplantation. Blood 1991; 77: 1607-1615.
15. van Leeuwen JE, van Tol MJ, Bodzinga BG, Wijnen JT, van der Keur M, Joosten AM et al. Detection of mixed chimaerism in flow-sorted cell subpopulations by PCR-amplified VNTR markers after allogeneic bone marrow transplantation. Br J Haematol 1991; 79: 218-225.
16. Spyridonidis A, Zeiser R, Wasch R, Bertz H, Finke J. Capillary electrophoresis for chimerism monitoring by PCR amplification of microsatellite markers after allogeneic hematopoietic cell transplantation. Clin Transplant 2005; 19: 350-356.
17. Suraksha A, Khan F, Sudha T, Sonia N. Short tandem repeat technology has diverse applications: Individual identification, Phylogenetic reconstruction and chimerism based post haematopoietic stem cell transplantation graft monitoring. Indian J Med Sci 2004; 58: 297-303.
18. Thiede C, Bornhauser M, Ehninger G. Evaluation of STR informativity for chimerism testing - comparative analysis of 27 STR systems in 203 matched related donor recipient pairs. Leukemia 2004; 18: 248-254.
19. Grubic Z, Stingl K, Cecuk-Jelicic E, Zunec R, Serventi Seiwerth R, Labar B et al. Evaluation of mixed chimerism in bone marrow transplantation program in Croatia. Transplant Proc 2005; 37: 1388-1391.
20. Brinkmann B, Klintschar M, Neuhuber F, Huhne J, Rolf B. Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat. Am J Hum Genet 1998; 62: 1408-1415.
21. Pugatsch T, Oppenheim A, Slavin S. Improved single-step PCR assay for sex identification post-allogeneic sex-mismatched BMT. Bone Marrow Transplant 1996; 17: 273-275.
22. Buno I, Nava P, Simon A, Gonzalez-Rivera M, Jimenez JL, Balsalobre P et al. A comparison of fluorescent in situ hybridization and multiplex short tandem repeat polymerase chain reaction for quantifying chimerism after stem cell transplantation. Haematologica 2005; 90: 1373-1379.
23. Alizadeh M, Bernard M, Danic B, Dauriac C, Birebent B, Lapart C et al. Quantitative assessment of hematopoietic chimerism after bone marrow transplantation by real-time quantitative polymerase chain reaction. Blood 2002; 99: 4618-4625.
24. Bader P, Niethammer D, Willasch A, Kreyenberg H, Klingebiel T. How and when should we monitor chimerism after allogeneic stem cell transplantation? Bone Marrow Transplant 2005; 35: 107-119.
25. Fundia AF, De Brasi C, Larripa I. Feasibility of a cost-effective approach to evaluate short tandem repeat markers suitable for chimerism follow-up. Mol Diagn 2004; 8: 87-91.