Inferring recent human phylogenies using forensic STR technology

Forensic Science International

Volumn 133, Issue 3, 2003, Pages 260-265

  Rowold, Diane J ^a   Herrera, Rene J ^a  

^a FLORIDA INTERNATIONAL UNIVERSITY   (United States)

Author keywords

Microsatellite; Phylogenetic analysis; Recent human evolution; STR

Indexed keywords

ARTICLE; FORENSIC SCIENCE; GENETIC POLYMORPHISM; HAPLOTYPE; HUMAN; NORMAL HUMAN; PHYLOGENETIC TREE; PHYLOGENY; POLYMORPHIC LOCUS; POPULATION GENETICS; PRIORITY JOURNAL; RACE; TANDEM REPEAT; Y CHROMOSOME;

EID: 0038779262     PISSN: 03790738     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0379-0738(03)00073-2     Document Type: Article

References (30)

1. Edwards A., Hammond H., Jin L., Caskey C., Chakraborty R. Genetic variation at five trimeric and tetrameric tandem repeat loci in four human population groups. Genomics. 12:1992;241-253.
2. Edwards A., Civitello A., Hammond H., Caskey C. DNA typing and genetic mapping with trimeric and tetrameric tandem repeats. Am. J. Hum. Genet. 49:1991;746-756.
3. Hearne C., Ghosh S., Todd J. Microsatellites for linkage analysis of genetic traits. Trends Genet. 8:1992;288-295.
4. Bowcock A., Ruiz-Linares A., Tomfohrde J., Minch E., Kidd J.R., Cavall- Sforza L.L. High resolution of human evolutionary trees with polymorphic microsatellites. Nature. 368:1994;455-457.
5. Jorde L., Bamshad M., Watkins W., Zenger R., Fraley A., Krakowiak P., Carpenter K., Soodyall H., Jenkins T., Rogers A. Origins and affinities of modern humans: a comparison of mitochondrial and nuclear genetic data. Am. J. Hum. Genet. 57:1995;523-538.
6. Hammond H., Jin L., Zhong Y., Caskey C., Chakraborty R. Evaluation of 13 short tandem repeat loci for use in personal identification applications. Am. J. Hum. Genet. 55:1994;175-189.
7. Kimpton C., Gill P., Walton A., Urquhart A., Millican E., Adams M. Automated DNA profiling employing multiplex amplification of short tandem repeat loci. PCR Methods Appl. 3:1993;13-22.
8. Deka R., Shriver M., Yu L., Ferrell R., Chakraborty R. Intra- and inter-population diversity at short tandem repeat loci in diverse populations in the world. Electrophoresis. 16:1995;1659-1664.
9. Chakraborty R., Stivers D., Su B., Zhong Y., Budowle B. The utility of short tandem repeat loci beyond human identification: implications for development of new DNA typing systems. Electrophoresis. 20:1999;1682-1696.
10. Budowle B., Chakraborty R. Population variation at the CODIS core short tandem repeat loci in Europeans. Legal Med. 3:2001;29-33.
11. Nauta M., Weissing F. Constraints on allele size at microsatellite loci: implications for genetic differentiation. Genetics. 143:1996;1021-1032.
12. Weber J., Wong C. Mutation of human short tandem repeats. Hum. Mol. Genet. 2:1993;1123-1128.
13. Brinkmann B., Klintschar M., Neuhuber F., Huhne J., Rolf B. Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. Am. J. Hum. Genet. 62:1998;1408-1415.
14. Budowle B., Nhari L., Moretti T., Kanoyangwa S., Masuka E., Defenbaugh D., Smerick J. Zimbabwe black population data on the six short tandem repeat loci - CSF1PO, TPOX, TH01, D3S1358, VWA, and FGA. Forensic Sci. Int. 90:1997;215-221.
15. Thomson J., Pilotti V., Stevens P., Ayres K., Debenham P. Validation of short tandem repeat analysis for the investigation of cases of disputed paternity. Forensic Sci. Int. 100:1999;1-16.
16. Pu C., Wu F., Cheng C., Wu K., Chao C., Li J. DNA short tandem repeat profiling of Chinese population in Taiwan determined by using an automated sequencer. Forensic Sci. Int. 97:1998;47-51.
17. Yamamoto T., Uchihi R., Nozawa H., Huang X., Leong Y., Tanaka M., Mizutani M., Tamaki K., Katsumata Y. Allele distribution at the nine STR loci - D3S1358, vWA, FGA, TH01, TPOX, CSF1PO, D5S818, D13S317, and D7S820 - in the Japanese population by multiplex PCR and capillary electrophoresis. J. Forensic Sci. 44:1999;167-170.
18. Martinovic I., Barac L., Furac I., Janicijevic B., Kubat M., Pericic M., Vidovic B., Rudan P. STR polymorphism in the population of the island of Hvar. Hum. Biol. 71:1999;341-352.
19. Kupferschmid T., Calicchio T., Budowle B. Maine Caucasian population DNA database using twelve short tandem repeat loci. J. Forensic Sci. 44:1999;392-395.
20. Santos S., Budowle B., Smerick J., Keys K., Moretti T. Portuguese population data on the six short tandem repeat loci: CSF1PO, TPOX, TH01, D3S1358, VWA and FGA. Forensic Sci. Int. 83:1996;229-235.
21. Garofano L., Pizzamiglio M., Vecchio C., Lago G., Floris T., D'Errico G., Brembilla G., Romano A., Budowle B. Italian population data on the thirteen short tandem repeat loci: HUMTH01, D21S11, D18S51, HUMVWFA31, HUMFIBRA, D8S1179, HUMTPOX, HUMCSF1PO, D16S539, D7S820, D13S317, D7S818, D3S1358. Forensic Sci. Int. 97:1998;53-60.
22. Nei M. Genetic distance between populations. Am. Nat. 106:1972;283-292.
23. J. Felsenstein, Phylogeny Inference Package (PHYLIP) version 3.5c/ distributed by the author, Department of Genetics, University of Washington, Seattle, 1993.
24. F.J. Rohlf, NTSYSpc, Version 2.1 (2002), Exeter Publishing Ltd., Setauket, NY.
25. Wright S. The genetical structure of populations. Ann. Hugenics. 15:1951;323-354.
26. Perez-Lezaun A., Calafell F., Mateu E., Comas D., Ruiz-Pacheco R., Bertranpetit J. Microsatellite variation and the differentiation of modern humans. Hum. Genet. 99:1997;1-7.
27. Jorde L., Rogers A., Bamshad M., Watkins W., Krakowiak P., Sung S., Kere J., Harpending H. Microsatellite diversity and the demographic history of modern humans. Proc. Natl. Acad. Sci. U.S.A. 94:1997;100-3103.
28. Cavalli-Sforza L.L., Edwards A. Phylogenetic analysis. Models and estimation procedures. Am. J. Hum. Genet. 19(Suppl.):1967;233.
29. G. Antunez-de-Mayolo, P. Antunez-de-Mayolo, A. Antunez-de-Mayolo, S. Papiha, M. Hammer, E. Yunis, J. Yunis, C. Damodaran, M. de Pancorbo, J. Caeiro, V. Puzyrev, R.J. Herrera, Phylogenetics of worldwide human populations as determined by polymorphic Alu insertions (PAIs), Electrophoresis 23 (2002) 3346-3356.
30. Primmer A., Saino N., Moller A., Ellegren H. Directional evolution in germline microsatellite mutations. Nat. Genet. 13:1996;391-393.