-
1
-
-
0014489272
-
Metabolic stability and epigenesis in randomly constructed genetic nets
-
S. A. Kauffman, Metabolic stability and epigenesis in randomly constructed genetic nets, J. Theor. Biol. 22, 437 (1969).
-
(1969)
J. Theor. Biol.
, vol.22
, pp. 437
-
-
Kauffman, S.A.1
-
2
-
-
0015609281
-
The logical analysis of continuous, non-linear biochemical control networks
-
K. Glass and S. A. Kauffman, The logical analysis of continuous, non-linear biochemical control networks, J. Theor. Biol. 39, 103 (1973).
-
(1973)
J. Theor. Biol.
, vol.39
, pp. 103
-
-
Glass, K.1
Kauffman, S.A.2
-
3
-
-
0004161153
-
-
Oxford University Press, Oxford
-
S. A. Kauffman, The Origins of Order (Oxford University Press, Oxford, 1993), pp. 173-235.
-
(1993)
The Origins of Order
, pp. 173-235
-
-
Kauffman, S.A.1
-
4
-
-
0343341648
-
Dynamics of complex systems: Scaling laws for the period of Boolean networks
-
R. Albert and A.-L. Barabasi, Dynamics of complex systems: scaling laws for the period of Boolean networks, Phys. Rev. Lett. 84(24), 5660 (2000).
-
(2000)
Phys. Rev. Lett.
, vol.84
, Issue.24
, pp. 5660
-
-
Albert, R.1
Barabasi, A.-L.2
-
5
-
-
0038324265
-
Finding cycles in synchronous Boolean networks with applications to biochemical systems
-
J. Heidel, J. Maloney, C. Farrow and J. A. Rogers, Finding cycles in synchronous Boolean networks with applications to biochemical systems, Int. J. Bifur. Chaos 13, 535 (2003).
-
(2003)
Int. J. Bifur. Chaos
, vol.13
, pp. 535
-
-
Heidel, J.1
Maloney, J.2
Farrow, C.3
Rogers, J.A.4
-
6
-
-
0035650176
-
From topology to dynamics in biochemical networks
-
J. J. Fox and C. C. Hill, From topology to dynamics in biochemical networks, Chaos, 11(4), 809 (2001).
-
(2001)
Chaos
, vol.11
, Issue.4
, pp. 809
-
-
Fox, J.J.1
Hill, C.C.2
-
7
-
-
0345983657
-
From Boolean to probabilistic Boolean networks as models of genetic regulatory networks
-
I. Shmulevich, E. R. Dougherty and W. Zhang, From Boolean to probabilistic Boolean networks as models of genetic regulatory networks, Proc. IEEE 90(11), 1778 (2002).
-
(2002)
Proc. IEEE
, vol.90
, Issue.11
, pp. 1778
-
-
Shmulevich, I.1
Dougherty, E.R.2
Zhang, W.3
-
8
-
-
0036184629
-
Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks
-
I. Shmulevich, E. R. Dougherty, S. Kim and W. Zhang, Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks, Bioinformatics 18(2), 261 (2002).
-
(2002)
Bioinformatics
, vol.18
, Issue.2
, pp. 261
-
-
Shmulevich, I.1
Dougherty, E.R.2
Kim, S.3
Zhang, W.4
-
9
-
-
0347164904
-
Control of stationary behavior in probabilistic Boolean networks by means of structural intervention
-
I. Shmulevich, E. R. Dougherty and W. Zhang, Control of stationary behavior in probabilistic Boolean networks by means of structural intervention, J. Biol. Syst. 10(4), 431 (2002).
-
(2002)
J. Biol. Syst.
, vol.10
, Issue.4
, pp. 431
-
-
Shmulevich, I.1
Dougherty, E.R.2
Zhang, W.3
-
10
-
-
0036772705
-
Gene perturbation and intervention in probabilistic Boolean networks
-
I. Shmulevich, E. R. Dougherty and W. Zhang, Gene perturbation and intervention in probabilistic Boolean networks, Bioinformatics 18(10), 1319 (2002).
-
(2002)
Bioinformatics
, vol.18
, Issue.10
, pp. 1319
-
-
Shmulevich, I.1
Dougherty, E.R.2
Zhang, W.3
-
11
-
-
0141480040
-
The role of certain Post classes in Boolean network models of genetic networks
-
I. Shmulevich, H. Lähdesmäki, E. R. Dougherty, J. Astola and W. Zhang, The role of certain Post classes in Boolean network models of genetic networks, PNAS 100(19), 10734 (2003).
-
(2003)
PNAS
, vol.100
, Issue.19
, pp. 10734
-
-
Shmulevich, I.1
Lähdesmäki, H.2
Dougherty, E.R.3
Astola, J.4
Zhang, W.5
-
12
-
-
4344706221
-
Activities and sensitivities in Boolean network models
-
I. Shmulevich and S. Kauffman, Activities and sensitivities in Boolean network models, Phys. Rev. Lett. 93(4), 048 701 (2004).
-
(2004)
Phys. Rev. Lett.
, vol.93
, Issue.4
, pp. 048-701
-
-
Shmulevich, I.1
Kauffman, S.2
-
13
-
-
0034850921
-
Genomics, complexity and drug discovery: Insights from Boolean network models of cellular regulation
-
S. Huang, Genomics, complexity and drug discovery: insights from Boolean network models of cellular regulation, Pharmacogenomics 2(3), 203 (2001).
-
(2001)
Pharmacogenomics
, vol.2
, Issue.3
, pp. 203
-
-
Huang, S.1
-
14
-
-
0034715919
-
Shape - Dependent control of cell growth, differentiation, and apoptosis: Switching between attractors in cell regulatory networks
-
S. Huang and D. E. Ingber, Shape - dependent control of cell growth, differentiation, and apoptosis: switching between attractors in cell regulatory networks, Exp. Cell Res. 261, 91 (2000).
-
(2000)
Exp. Cell Res.
, vol.261
, pp. 91
-
-
Huang, S.1
Ingber, D.E.2
-
15
-
-
3142691038
-
Temporal Boolean network models of genetic networks and their inference from gene expression time series
-
A. Silvescu and V. Honavar, Temporal Boolean network models of genetic networks and their inference from gene expression time series, Complex Systems 13, 61 (2001).
-
(2001)
Complex Systems
, vol.13
, pp. 61
-
-
Silvescu, A.1
Honavar, V.2
-
16
-
-
33645396758
-
Modeling complex gene expression networks: Steady, periodic and chaotic states
-
J. Gómez-Gardeńes, Y. Moreno and L. M. Floría, Modeling complex gene expression networks: steady, periodic and chaotic states, Quant. Biol. 39, 103 (1973).
-
(1973)
Quant. Biol.
, vol.39
, pp. 103
-
-
Gómez-Gardeńes, J.1
Moreno, Y.2
Floría, L.M.3
-
17
-
-
33645396986
-
Random Boolean network models and the yeast transcriptional network
-
S. Kauffman, C. Peterson, B. Samuelsson and C. Troein, Random Boolean network models and the yeast transcriptional network, J. Theor. Biol. 22, 437 (1969).
-
(1969)
J. Theor. Biol.
, vol.22
, pp. 437
-
-
Kauffman, S.1
Peterson, C.2
Samuelsson, B.3
Troein, C.4
-
18
-
-
0035097399
-
Chaos in a simple Boolean network
-
M. Andrecut and M. K. Ali, Chaos in a simple Boolean network, Int. J. Mod. Phys. B 15(1), 17 (2001).
-
(2001)
Int. J. Mod. Phys. B
, vol.15
, Issue.1
, pp. 17
-
-
Andrecut, M.1
Ali, M.K.2
-
19
-
-
41349120085
-
Asynchronous random Boolean network model based on elementary cellular automata Rule 126
-
M. T. Matache and J. Heidel, Asynchronous random Boolean network model based on elementary cellular automata Rule 126, Phys. Rev. E 71, 026 232 (2005).
-
(2005)
Phys. Rev. E
, vol.71
, pp. 026-232
-
-
Matache, M.T.1
Heidel, J.2
-
20
-
-
2442576146
-
Classification of random Boolean networks
-
eds. R. K. Standish, M. A. Bedau and H. A. Abbass. MIT Press, Sydney, Australia
-
C. Gershenson, Classification of random Boolean networks, Artificial Life VIII, eds. R. K. Standish, M. A. Bedau and H. A. Abbass (MIT Press, Sydney, Australia, 2002), pp. 1-8.
-
(2002)
Artificial Life VIII
, pp. 1-8
-
-
Gershenson, C.1
-
21
-
-
84965087951
-
A random Boolean network model exhibiting deterministic chaos
-
M. T. Matache and J. Heidel, A random Boolean network model exhibiting deterministic chaos, Phys. Rev. E 69, 056 214 (2004).
-
(2004)
Phys. Rev. E
, vol.69
, pp. 056-214
-
-
Matache, M.T.1
Heidel, J.2
-
22
-
-
3543024749
-
Do artificial ants march in step? Ordered asynchronous processes and modularity in biological systems
-
eds. R. K. Standish, M. A. Bedau and H. A. Abbass. MIT Press, Sydney, Australia
-
D. Cornforth, D. G. Green, D. Newth and M. Kirley, Do artificial ants march in step? Ordered asynchronous processes and modularity in biological systems, Artificial Life VIII eds. R. K. Standish, M. A. Bedau and H. A. Abbass (MIT Press, Sydney, Australia, 2002), pp. 28-32.
-
(2002)
Artificial Life VIII
, pp. 28-32
-
-
Cornforth, D.1
Green, D.G.2
Newth, D.3
Kirley, M.4
-
23
-
-
0003801963
-
-
Wolfram Media, Inc., Canada
-
S. Wolfram, A New Kind of Science (Wolfram Media, Inc., Canada, 2002), pp. 51-114.
-
(2002)
A New Kind of Science
, pp. 51-114
-
-
Wolfram, S.1
-
24
-
-
3242680975
-
Discrete dynamaical networks and their attractor basins
-
A. Wuensche, Discrete dynamaical networks and their attractor basins, Complex. Int. 6, (1999).
-
(1999)
Complex. Int.
, vol.6
-
-
Wuensche, A.1
-
25
-
-
22144476180
-
Basins of attraction in network dynamics: A conceptual framework for biomolecular networks
-
eds. G. Schlosser and G. P. Wagner. Chicago University Press, Chicago, Chapter 13
-
A. Wuensche, Basins of attraction in network dynamics: a conceptual framework for biomolecular networks, in Modularity in Development and Evolution, eds. G. Schlosser and G. P. Wagner (Chicago University Press, Chicago, 2004), Chapter 13, pp. 288-311.
-
(2004)
Modularity in Development and Evolution
, pp. 288-311
-
-
Wuensche, A.1
-
26
-
-
0003568098
-
Chaos
-
Springer-Verlag, New York
-
K. T. Alligood, T. D. Sauer and J. A. Yorke, Chaos, An Introduction to Dynamical Systems (Springer-Verlag, New York, 1997), p. 533.
-
(1997)
An Introduction to Dynamical Systems
, pp. 533
-
-
Alligood, K.T.1
Sauer, T.D.2
Yorke, J.A.3
-
27
-
-
3042677110
-
Ordered asynchronous processes in natural and artificial systems
-
eds. P. Whigham et al., The University of Otago, Dunedin, New Zealand
-
D. Cornforth, D. G. Green, D. Newth, and M. R. Kirley, Ordered asynchronous processes in natural and artificial systems, eds. P. Whigham et al., Proc. 5th Australia-Japan Joint Workshop on Intelligent & Evolutionary Systems (The University of Otago, Dunedin, New Zealand, 2001), pp. 105-112.
-
(2001)
Proc. 5th Australia-Japan Joint Workshop on Intelligent & Evolutionary Systems
, pp. 105-112
-
-
Cornforth, D.1
Green, D.G.2
Newth, D.3
Kirley, M.R.4
-
29
-
-
0000465527
-
Delay-induced chaos in catalytic surface reactions: No reduction on Pt(100)
-
N. Khrustova,, G. Veser, A. Mikhailov and R. Imbihl, Delay-induced chaos in catalytic surface reactions: no reduction on Pt(100), Phys. Rev. Lett. 75, 3564 (1995).
-
(1995)
Phys. Rev. Lett.
, vol.75
, pp. 3564
-
-
Khrustova, N.1
Veser, G.2
Mikhailov, A.3
Imbihl, R.4
-
30
-
-
22244490653
-
Synchronization in neural networks
-
H. D. Abarbanel, M. I. Rabinovich, A. Selverston, M. V. Bazhenov, R. Huerta, M. M. Sushchik and L. L. Rubchinskii, Synchronization in neural networks, Phys. Usp. 39, 337 (1996).
-
(1996)
Phys. Usp.
, vol.39
, pp. 337
-
-
Abarbanel, H.D.1
Rabinovich, M.I.2
Selverston, A.3
Bazhenov, M.V.4
Huerta, R.5
Sushchik, M.M.6
Rubchinskii, L.L.7
-
31
-
-
0034195177
-
Physics of the rhythmic applause
-
Z. Neda, E. Ravasz, T. Vicsek, Y. Brechet and A. L. Barabasi, Physics of the rhythmic applause, Phys. Rev. E 61, 6987 (2000).
-
(2000)
Phys. Rev. E
, vol.61
, pp. 6987
-
-
Neda, Z.1
Ravasz, E.2
Vicsek, T.3
Brechet, Y.4
Barabasi, A.L.5
-
32
-
-
0002955610
-
Synchronization of stochastically coupled cellular automata
-
L. G. Morelli and D. H. Zanette, Synchronization of stochastically coupled cellular automata, Phys. Rev. E 58(1), R8 (1998).
-
(1998)
Phys. Rev. E
, vol.58
, Issue.1
-
-
Morelli, L.G.1
Zanette, D.H.2
-
33
-
-
4244104303
-
Synchronization of Kauffman networks
-
L. G. Morelli and D. H. Zanette, Synchronization of Kauffman networks, Phys. Rev. E 63, 036204-1 (2001).
-
(2001)
Phys. Rev. E
, vol.63
, pp. 036204-036211
-
-
Morelli, L.G.1
Zanette, D.H.2
-
34
-
-
0037732522
-
Synchronization of coupled extended dynamical systems: A short review
-
D. H. Zanette and L. G. Morelli, Synchronization of coupled extended dynamical systems: a short review, Int. J. Bifur. Chaos 13(4), 1 (2003).
-
(2003)
Int. J. Bifur. Chaos
, vol.13
, Issue.4
, pp. 1
-
-
Zanette, D.H.1
Morelli, L.G.2
|