Nucleotide sequence and DNA secondary structure, as well as replication protein A, modulate the single-stranded abasic endonuclease activity of APE1

Journal of Biological Chemistry

Volumn 281, Issue 7, 2006, Pages 3889-3898

  Fan, Jinshui ^a   Matsumoto, Yoshihiro ^b   Wilson III, David M ^a  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

^b FOX CHASE CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLS; COMPUTATIONAL COMPLEXITY; DNA; ENZYME KINETICS; MOLECULAR STRUCTURE; PROTEINS;

ENDONUCLEASE; REPLICATION; SECONDARY STRUCTURE; TEMPLATES;

GENETIC ENGINEERING;

DNA (APURINIC OR APYRIMIDINIC SITE) LYASE; DOUBLE STRANDED DNA; ENDONUCLEASE; OLIGONUCLEOTIDE; REPLICATION PROTEIN A; SINGLE STRANDED DNA; APEX1 PROTEIN, HUMAN; DNA;

ARTICLE; BINDING AFFINITY; DNA CLEAVAGE; DNA STRUCTURE; ENZYME ACTIVITY; ENZYME INACTIVATION; ENZYME INHIBITION; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN DNA BINDING; PROTEIN FUNCTION; STRUCTURE ANALYSIS; CHEMISTRY; ENZYME SPECIFICITY; HUMAN; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY;

MAMMALIA;

BASE SEQUENCE; DNA; DNA, SINGLE-STRANDED; DNA-(APURINIC OR APYRIMIDINIC SITE) LYASE; HUMANS; MOLECULAR SEQUENCE DATA; REPLICATION PROTEIN A; SUBSTRATE SPECIFICITY;

EID: 33645225808     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M511004200     Document Type: Article

References (62)

1. Wilson, D. M., III, and Barsky, D. (2001) Mutat. Res. 485, 283-307
2. Fortini, P., Pascucci, B., Parlanti, E., D'Errico, M., Simonelli, V., and Dogliotti, E. (2003) Biochimie (Paris) 85, 1053-1071
3. Lindahl, T. (1993) Nature 362, 709-715
4. Stivers, J. T., and Jiang, Y. L. (2003) Chem. Rev. 103, 2729-2759
5. Loeb, L. A., and Preston, B. D. (1986) Annu. Rev. Genet. 20, 201-230
6. Huamani, J., McMahan, C. A., Herbert, D. C., Reddick, R., McCarrey, J. R., MacInnes, M. I., Chen, D. J., and Walter, C. A. (2004) Mol. Cell. Biol. 24, 8145-8153
7. Meira, L. B., Devaraj, S., Kisby, G. E., Burns, D. K., Daniel, R. L., Hammer, R. E., Grundy, S., Jialal, I., and Friedberg, E. C. (2001) Cancer Res. 61, 5552-5557
8. Hadi, M. Z., Coleman, M. A., Fidelis, K., Mohrenweiser, H. W., and Wilson, D. M., III (2000) Nucleic Acids Res. 28, 3871-3879
9. Demple, B., and Harrison, L. (1994) Annu. Rev. Biochem. 63, 915-948
10. Fung, H., and Demple, B. (2005) Mol. Cell 17, 463-470
11. Izumi, T., Brown, D. B., Naidu, C. V., Bhakat, K. K., MacInnes, M. A., Saito, H., Chen, D. J., and Mitra, S. (2005) Proc. Natl. Acad. Sci. U. S. A. 102, 5739-5743
12. Barzilay, G., Mol, C. D., Robson, C. N., Walker, L. J., Cunningham, R. P., Tainer, J. A., and Hickson, I. D. (1995) Nat. Struct. Biol. 2, 561-568
13. Wilson, D. M., III, Takeshita, M., Grollman, A. P., and Demple, B. (1995) J. Biol. Chem. 270, 16002-16007, and references therein
14. Strauss, P. R., Beard, W. A., Patterson, T. A., and Wilson, S. H. (1997) J. Biol. Chem. 272, 1302-1307
15. Marenstein, D. R., Wilson, D. M., III, and Teebor, G. W. (2004) DNA Repair (Amst.) 3, 527-533
16. Wilson, D. M., III (2005) J. Mol. Biol. 345, 1003-1014, and references therein
17. Wold, M. S. (1997) Annu. Rev. Biochem. 66, 61-92
18. Wobbe, C. R., Weissbach, L., Borowiec, J. A., Dean, F. B., Murakami, Y., Bullock, P., and Hurwitz, J. (1987) Proc. Natl. Acad. Sci. U. S. A. 84, 1834-1838
19. Wold, M. S., and Kelly, T. (1988) Proc. Natl. Acad. Sci. U. S. A. 85, 2523-2527
20. Fairman, M. P., and Stillman, B. (1988) EMBO J. 7, 1211-1218
21. Thoma, B. S., and Vasquez, K. M. (2003) Mol. Carcinog. 38, 1-13
22. Iftode, C., Daniely, Y., and Borowiec, J. A. (1999) Crit. Rev. Biochem. Mol. Biol. 34, 141-180
23. Erzberger, J. P., Barsky, D., Scharer, O. D., Colvin, M. E., and Wilson, D. M., III (1998) Nucleic Acids Res. 26, 2771-2778, and references therein
24. Henricksen, L. A., Umbricht, C. B., and Wold, M. S. (1994) J. Biol. Chem. 269, 11121-11132
25. Kenny, M. K., Schlegel, U., Furneaux, H., and Hurwitz, J. (1990) J. Biol. Chem. 265, 7693-7700
26. Hofacker, I. L. (2003) Nucleic Acids Res. 31, 3429-3431
27. Parkinson, M. J., and Lilley, D. M. (1997) J. Mol. Biol. 270, 169-178
28. Declais, A. C., Fogg, J. M., Freeman, A. D., Coste, F., Hadden, J. M., Phillips, S. E., and Lilley, D. M. (2003) EMBO J. 22, 1398-1409
29. Beloglazova, N. G., Kirpota, O. O., Starostin, K. V., Ishchenko, A. A., Yamkovoy, V. I., Zharkov, D. O., Douglas, K. T., and Nevinsky, G. A. (2004) Nucleic Acids Res. 32, 5134-5146
30. Kim, C., Snyder, R. O., and Wold, M. S. (1992) Mol. Cell. Biol. 12, 3050-3059
31. Kim, C., Paulus, B. F., and Wold, M. S. (1994) Biochemistry 33, 14197-14206
32. Blackwell, L. J., and Borowiec, J. A. (1994) Mol. Cell. Biol. 14, 3993-4001
33. Bochkareva, E., Belegu, V., Korolev, S., and Bochkarev, A. (2001) EMBO J. 20, 612-618
34. Bochkareva, E., Korolev, S., Lees-Miller, S. P., and Bochkarev, A. (2002) EMBO J. 21, 1855-1863
35. Wilson, D. M., III, Takeshita, M., and Demple, B. (1997) Nucleic Acids Res. 25, 933-939
36. Erzberger, J. P., and Wilson, D. M., III (1999) J. Mol. Biol. 290, 447-457, and references therein
37. Nguyen, L. H., Barsky, D., Erzberger, J. P., and Wilson, D. M., III (2000) J. Mol. Biol. 298, 447-459, and references therein
38. Hadi, M. Z., Ginalski, K., Nguyen, L. H., and Wilson, D. M., III (2002) J. Mol. Biol. 316, 853-866, and references therein
39. Nilsen, H., Lindahl, T., and Verreault, A. (2002) EMBO J. 21, 5943-5952
40. Beard, B. C., Wilson, S. H., and Smerdon, M. J. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 7465-7470
41. Georgaki, A., Strack, B., Podust, V., and Hubscher, U. (1992) FEBS Lett. 308, 240-244
42. Georgaki, A., and Hubscher, U. (1993) Nucleic Acids Res. 21, 3659-3665
43. Treuner, K., Ramsperger, U., and Knippers, R. (1996) J. Mol. Biol. 259, 104-112
44. Parsian, A. J., Funk, M. C., Tao, T. Y., and Hunt, C. R. (2002) Mutat. Res. 501, 105-113
45. Opresko, P. L., Fan, J., Danzy, S., Wilson, D. M., III, and Bohr, V. A. (2005) Nucleic Acids Res. 33, 1230-1239
46. Lao, Y., Gomes, X. V., Ren, Y., Taylor, J. S., and Wold, M. S. (2000) Biochemistry 39, 850-859
47. Patrick, S. M., and Turchi, J. J. (2001) J. Biol. Chem. 276, 22630-22637
48. Hey, T., Lipps, G., and Krauss, G. (2001) Biochemistry 40, 2901-2910
49. Liu, Y., Yang, Z., Utzat, C. D., Liu, Y., Geacintov, N. E., Basu, A. K., and Zou, Y. (2005) Biochem. J. 385, 519-526
50. Parker, A., Gu, Y., Mahoney, W., Lee, S. H., Singh, K. K., and Lu, A. L. (2001) J. Biol. Chem. 276, 5547-5555
51. Otterlei, M., Warbrick, E., Nagelhus, T. A., Haug, T., Slupphaug, G., Akbari, M., Aas, P. A., Steinsbekk, K., Bakke, O., and Krokan, H. E. (1999) EMBO J. 18, 3834-3844
52. Morland, I., Rolseth, V., Luna, L., Rognes, T., Bjoras, M., and Seeberg, E. (2002) Nucleic Acids Res. 30, 4926-4936
53. Ranalli, T. A., DeMott, M. S., and Bambara, R. A. (2002) J. Biol. Chem. 277, 1719-1727
54. Matsumoto, Y., Kim, K., Hurwitz, J., Gary, R., Levin, D. S., Tomkinson, A. E., and Park, M. S. (1999) J. Biol. Chem. 274, 33703-33708
55. Dianov, G. L., Jensen, B. R., Kenny, M. K., and Bohr, V. A. (1999) Biochemistry 38, 11021-11025
56. DeMott, M. S., Zigman, S., and Bambara, R. A. (1998) J. Biol. Chem. 273, 27492-27498
57. Clugston, C. K., McLaughlin, K., Kenny, M. K., and Brown, R. (1992) Cancer Res. 52, 6375-6379
58. He, Z., Henricksen, L. A., Wold, M. S., and Ingles, C. J. (1995) Nature 374, 566-569
59. Burns, J. L., Guzder, S. N., Sung, P., Prakash, S., and Prakash, L. (1996) J. Biol. Chem. 271, 11607-11610
60. Patrick, S. M., and Turchi, J. J. (1998) Biochemistry 37, 8808-8815
61. Larson, E. D., Cummings, W. J., Bednarski, D. W., and Maizels, N. (2005) Mol. Cell 20, 367-375
62. Takeshita, M., Chang, C. N., Johnson, F., Will, S., and Grollman, A. P. (1987) J. Biol. Chem. 262, 10171-10179