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Volumn 1, Issue 4, 2004, Pages 493-501

Proteomic technologies and their application to pancreatic cancer

Author keywords

2DE; LCM; Mass spectrometry; Pancreatic cancer; SELDI

Indexed keywords

BIOLOGICAL MARKER; TUMOR PROTEIN;

EID: 33645222221     PISSN: 14789450     EISSN: 17448387     Source Type: Journal    
DOI: 10.1586/14789450.1.4.493     Document Type: Review
Times cited : (17)

References (54)
  • 1
    • 33744808786 scopus 로고    scopus 로고
    • Estimated new cancer cases and deaths for 2004
    • National Cancer Institute. Estimated new cancer cases and deaths for 2004. SEER Cancer Statistics Review 1975-2001. (2004).
    • (2004) SEER Cancer Statistics Review 1975-2001
  • 2
    • 10744222680 scopus 로고    scopus 로고
    • Exocrine pancreatic cancer, cigarette smoking, and diabetes mellitus: A case control study in Northern Italy
    • Bonelli L, Aste H, Bovo P et al. Exocrine pancreatic cancer, cigarette smoking, and diabetes mellitus: a case control study in Northern Italy. Pancreas 27, 143-149 (2003).
    • (2003) Pancreas , vol.27 , pp. 143-149
    • Bonelli, L.1    Aste, H.2    Bovo, P.3
  • 4
    • 0036895066 scopus 로고    scopus 로고
    • Risk of pancreatic ductal adenocarcinoma in chronic pancreatitis
    • Howes N, Neoptolemos JP. Risk of pancreatic ductal adenocarcinoma in chronic pancreatitis. Gut 51, 765-766 (2002).
    • (2002) Gut , vol.51 , pp. 765-766
    • Howes, N.1    Neoptolemos, J.P.2
  • 6
    • 1342289673 scopus 로고    scopus 로고
    • Clinical usefulness of carbohydrate antigen 19-9 as a screening test for pancreatic cancer in an asymptomatic population
    • Kim JE, Lee KT, Lee JK et al. Clinical usefulness of carbohydrate antigen 19-9 as a screening test for pancreatic cancer in an asymptomatic population. J. Gastroenterol. Hepatol. 19, 182-186 (2004).
    • (2004) J. Gastroenterol. Hepatol. , vol.19 , pp. 182-186
    • Kim, J.E.1    Lee, K.T.2    Lee, J.K.3
  • 7
    • 0035875012 scopus 로고    scopus 로고
    • A white paper: The product of a pancreas cancer think tank
    • Kern SE, Hrubran R, Hollingsworth MA et al. A white paper: the product of a pancreas cancer think tank. Cancer Res. 61, 4923-4932 (2001).
    • (2001) Cancer Res. , vol.61 , pp. 4923-4932
    • Kern, S.E.1    Hrubran, R.2    Hollingsworth, M.A.3
  • 8
    • 0036883940 scopus 로고    scopus 로고
    • Pancreatic cancer biology and genetics
    • Bardeesy N, DePinho RA. Pancreatic cancer biology and genetics. Nature Rev. 2, 897-909 (2002). Excellent review on the molecular pathology of pancreatic cancer.
    • (2002) Nature Rev. , vol.2 , pp. 897-909
    • Bardeesy, N.1    DePinho, R.A.2
  • 10
    • 0032985541 scopus 로고    scopus 로고
    • Pancreatic cancer: A report of treatment and survival trends for 100,313 patients diagnosed from 1985-1995, using the National Cancer Database
    • Sener S, Frengen A, Menck HR, Winchester DP. Pancreatic cancer: a report of treatment and survival trends for 100,313 patients diagnosed from 1985-1995, using the National Cancer Database. J. Am. Coll. Surg. 189, 1-7 (1999).
    • (1999) J. Am. Coll. Surg. , vol.189 , pp. 1-7
    • Sener, S.1    Frengen, A.2    Menck, H.R.3    Winchester, D.P.4
  • 11
    • 12144287320 scopus 로고    scopus 로고
    • A randomized trial of chemoradiotherapy and chemotherapy after resection of pancreatic cancer
    • Neoptolemos JP, Stocken DD, Friess H et al. A randomized trial of chemoradiotherapy and chemotherapy after resection of pancreatic cancer. N. Engl. J. Med. 350, 1200-1210 (2004). Demonstrates the benefit of chemotherapy in the adjuvant setting for pancreatic cancer patients.
    • (2004) N. Engl. J. Med. , vol.350 , pp. 1200-1210
    • Neoptolemos, J.P.1    Stocken, D.D.2    Friess, H.3
  • 12
    • 0034303643 scopus 로고    scopus 로고
    • Molecular profiling of human cancer
    • Liotta L, Petricoin P. Molecular profiling of human cancer. Nature Rev. 1, 48-56 (2000).
    • (2000) Nature Rev. , vol.1 , pp. 48-56
    • Liotta, L.1    Petricoin, P.2
  • 13
    • 0033571118 scopus 로고    scopus 로고
    • In vivo gene expression profiling analysis
    • Sgroi DC, Teng S, Robinson G et al. In vivo gene expression profiling analysis. Cancer Res. 59, 5656-5661 (1999).
    • (1999) Cancer Res. , vol.59 , pp. 5656-5661
    • Sgroi, D.C.1    Teng, S.2    Robinson, G.3
  • 14
    • 0033022067 scopus 로고    scopus 로고
    • Effects of fixation on RNA extraction and amplification from laser microdissected tissue
    • Goldsworthy SM, Stockton PS, Trempus CS et al. Effects of fixation on RNA extraction and amplification from laser microdissected tissue. Mol. Carcinog. 25, 86-91 (1999).
    • (1999) Mol. Carcinog. , vol.25 , pp. 86-91
    • Goldsworthy, S.M.1    Stockton, P.S.2    Trempus, C.S.3
  • 15
    • 0028059330 scopus 로고
    • Frequent somatic mutations and homozygous deletions of the p16(MTS1) gene in pancreatic adenocarcinoma
    • Caldas C, Hahn SA, da Costa LT et al. Frequent somatic mutations and homozygous deletions of the p16(MTS1) gene in pancreatic adenocarcinoma. Nature Genet. 8, 27-32 (1994).
    • (1994) Nature Genet. , vol.8 , pp. 27-32
    • Caldas, C.1    Hahn, S.A.2    Da Costa, L.T.3
  • 16
    • 0031879859 scopus 로고    scopus 로고
    • Identification of expressed genes by laser-mediated manipulation of single cells
    • Schutze K, Lahr G. Identification of expressed genes by laser-mediated manipulation of single cells. Nature Biotechnol. 16, 737-742 (1998).
    • (1998) Nature Biotechnol. , vol.16 , pp. 737-742
    • Schutze, K.1    Lahr, G.2
  • 17
    • 0142213544 scopus 로고    scopus 로고
    • Development and application of laser capture microdissection combined with two-dimensional electrophoresis for the discovery of differentially regulated proteins in pancreatic ductal adenocarcinoma
    • Shekouh A, Thompson CC, Prime W et al. Development and application of laser capture microdissection combined with two-dimensional electrophoresis for the discovery of differentially regulated proteins in pancreatic ductal adenocarcinoma. Proteomics 3, 1988-2001 (2003). 2D electrophoresis (2DE)/matrix-assisted laser desorption/ionization applied to detect differential protein expression between microdissected normal and malignant pancreatic tissue.
    • (2003) Proteomics , vol.3 , pp. 1988-2001
    • Shekouh, A.1    Thompson, C.C.2    Prime, W.3
  • 18
    • 0020034902 scopus 로고
    • Two dimensional electrophoresis in basic and clinical research, exemplified by studies on the exocrine pancreas
    • Scheele GA. Two dimensional electrophoresis in basic and clinical research, exemplified by studies on the exocrine pancreas. Clin. Chem. 28, 1056-1061 (1982).
    • (1982) Clin. Chem. , vol.28 , pp. 1056-1061
    • Scheele, G.A.1
  • 19
    • 0036057585 scopus 로고    scopus 로고
    • Acquired resistance of pancreatic cancer cells towards 5-flurouracil and gemcitabine is associated with altered expression of apoptosis related genes
    • Shi X, Liu S, Kleef J, Friess H, Buchler M. Acquired resistance of pancreatic cancer cells towards 5-flurouracil and gemcitabine is associated with altered expression of apoptosis related genes. Oncology 62, 354-362 (2002).
    • (2002) Oncology , vol.62 , pp. 354-362
    • Shi, X.1    Liu, S.2    Kleef, J.3    Friess, H.4    Buchler, M.5
  • 20
    • 0035987497 scopus 로고    scopus 로고
    • Monitoring danorubicin induced alterations in protein expression in pancreas carcinoma cells by two dimensional electrophoresis
    • Moller A, Malerczyk C, Volker U, Stoppler H, Masser E. Monitoring danorubicin induced alterations in protein expression in pancreas carcinoma cells by two dimensional electrophoresis. Proteomics 2, 697-705 (2002).
    • (2002) Proteomics , vol.2 , pp. 697-705
    • Moller, A.1    Malerczyk, C.2    Volker, U.3    Stoppler, H.4    Masser, E.5
  • 21
    • 0035819883 scopus 로고    scopus 로고
    • Two dimensional electrophoresis: A powerful method to elucidate cellular responses to toxic compounds
    • Moller A, Soldan M, Volker U, Maser E. Two dimensional electrophoresis: a powerful method to elucidate cellular responses to toxic compounds. Toxicology 160, 129-138 (2001).
    • (2001) Toxicology , vol.160 , pp. 129-138
    • Moller, A.1    Soldan, M.2    Volker, U.3    Maser, E.4
  • 22
    • 0346458828 scopus 로고    scopus 로고
    • Proteomic analysis of pancreatic ductal carcinoma cells treated with 5-aza-2′-deoxycytidine
    • Cecconi D, Astner H, Donadelli M et al. Proteomic analysis of pancreatic ductal carcinoma cells treated with 5-aza-2′-deoxycytidine. Electrophoresis 24, 4291-4303 (2003).
    • (2003) Electrophoresis , vol.24 , pp. 4291-4303
    • Cecconi, D.1    Astner, H.2    Donadelli, M.3
  • 23
    • 0041439328 scopus 로고    scopus 로고
    • Proteomic profiling of pancreatic ductal carcinoma cell line treated with trichostatin A
    • Cecconi D, Scarpa A, Donadelli M et al. Proteomic profiling of pancreatic ductal carcinoma cell line treated with trichostatin A. Electrophoresis 24, 1871-1878 (2003).
    • (2003) Electrophoresis , vol.24 , pp. 1871-1878
    • Cecconi, D.1    Scarpa, A.2    Donadelli, M.3
  • 24
    • 0344131934 scopus 로고    scopus 로고
    • Increased expression of epidermal fatty acid binding protein, cofilin, and 14-3-3-σ (stratifin) detected by two-dimensional gel electrophoresis, mass spectrometry and microsequencing of drug-resistant human adenocarcinoma of the pancreas
    • Sinha P, Hutter G, Kottgen E et al. Increased expression of epidermal fatty acid binding protein, cofilin, and 14-3-3-σ (stratifin) detected by two-dimensional gel electrophoresis, mass spectrometry and microsequencing of drug-resistant human adenocarcinoma of the pancreas. Electrophoresis 20, 2952-2960 (1999).
    • (1999) Electrophoresis , vol.20 , pp. 2952-2960
    • Sinha, P.1    Hutter, G.2    Kottgen, E.3
  • 25
    • 1042303620 scopus 로고    scopus 로고
    • Study of the development of thermoresistance in human pancreatic carcinoma cell lines using proteome analysis
    • Poland J, Urbani A, Lage H, Schnolzer M, Sinha P. Study of the development of thermoresistance in human pancreatic carcinoma cell lines using proteome analysis. Electrophoresis 25, 175-183 (2004).
    • (2004) Electrophoresis , vol.25 , pp. 175-183
    • Poland, J.1    Urbani, A.2    Lage, H.3    Schnolzer, M.4    Sinha, P.5
  • 26
    • 1342326179 scopus 로고    scopus 로고
    • Two dimensional protein database of human pancreas
    • Hu L, Evers S, Lu ZH, Shen Y, Chen J. Two dimensional protein database of human pancreas. Electrophoresis 25, 512-518 (2004).
    • (2004) Electrophoresis , vol.25 , pp. 512-518
    • Hu, L.1    Evers, S.2    Lu, Z.H.3    Shen, Y.4    Chen, J.5
  • 27
    • 0036669447 scopus 로고    scopus 로고
    • Two dimensional electrophoresis; better than a poke in the ICAT
    • Patton WF, Schulenberg B, Steinberg T. Two dimensional electrophoresis; better than a poke in the ICAT. Curr. Opin. Biotechnol. 13, 321-328 (2002).
    • (2002) Curr. Opin. Biotechnol. , vol.13 , pp. 321-328
    • Patton, W.F.1    Schulenberg, B.2    Steinberg, T.3
  • 28
    • 0033051101 scopus 로고    scopus 로고
    • Direct analysis of protein complexes using mass spectrometry
    • Link A, Eng J, Schieltz DM et al. Direct analysis of protein complexes using mass spectrometry. Nature Biotechnol. 17, 676-682 (1999).
    • (1999) Nature Biotechnol. , vol.17 , pp. 676-682
    • Link, A.1    Eng, J.2    Schieltz, D.M.3
  • 29
    • 0034095972 scopus 로고    scopus 로고
    • The current state of two-dimensional electrophoresis with immobilised pH gradients
    • Gorg A, Obermaier C, Boguth G et al. The current state of two-dimensional electrophoresis with immobilised pH gradients. Electrophoresis 21, 1037-1053 (2000).
    • (2000) Electrophoresis , vol.21 , pp. 1037-1053
    • Gorg, A.1    Obermaier, C.2    Boguth, G.3
  • 30
    • 0034012953 scopus 로고    scopus 로고
    • Biomedical applications of two-dimensional electrophoresis using immobilised pH gradients: Current status
    • Hanash SM. Biomedical applications of two-dimensional electrophoresis using immobilised pH gradients: current status. Electrophoresis 21, 1202-1209 (2000).
    • (2000) Electrophoresis , vol.21 , pp. 1202-1209
    • Hanash, S.M.1
  • 31
    • 0034111635 scopus 로고    scopus 로고
    • A thousand points of light: The application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics
    • Patton WF. A thousand points of light: the application of fluorescence detection technologies to two-dimensional gel electrophoresis and proteomics. Electrophoresis 21, 1123-1144 (2000).
    • (2000) Electrophoresis , vol.21 , pp. 1123-1144
    • Patton, W.F.1
  • 32
    • 0343376097 scopus 로고    scopus 로고
    • Difference gel electrophoresis: A single gel method for detecting changes in protein extracts
    • Unlu M, Morgan ME, Minden JS. Difference gel electrophoresis: a single gel method for detecting changes in protein extracts. Electrophoresis 18, 2071-2077 (1997).
    • (1997) Electrophoresis , vol.18 , pp. 2071-2077
    • Unlu, M.1    Morgan, M.E.2    Minden, J.S.3
  • 33
    • 0142208703 scopus 로고    scopus 로고
    • Wiley VCH, Weinheim, Germany
    • Westermeier R, Naven T. In: Proteomics in Practice. Wiley VCH, Weinheim, Germany (2002). Excellent reference material of practical proteomics, in particular 2DE.
    • (2002) Proteomics in Practice
    • Westermeier, R.1    Naven, T.2
  • 34
    • 0012618726 scopus 로고    scopus 로고
    • Trends in mass spectrometry instrumentation for proteomics
    • Smith RD. Trends in mass spectrometry instrumentation for proteomics. Trends Biotechnol. 12(Suppl.), S3-S7 (2002).
    • (2002) Trends Biotechnol. , vol.12
    • Smith, R.D.1
  • 36
    • 0035543090 scopus 로고    scopus 로고
    • Serum protein profiles of patients with pancreatic cancer and chronic pancreatitis: Searching for a diagnostic protein pattern
    • Valerio A, Basso D, Mazza S et al. Serum protein profiles of patients with pancreatic cancer and chronic pancreatitis: searching for a diagnostic protein pattern. Rapid Comm. Mass Spec. 15, 2420-2425 (2001).
    • (2001) Rapid Comm. Mass Spec. , vol.15 , pp. 2420-2425
    • Valerio, A.1    Basso, D.2    Mazza, S.3
  • 37
    • 0242608332 scopus 로고    scopus 로고
    • Protein microarrays: Promising tools for proteomic research
    • Templin MF, Stoll D, Schwenk JM et al. Protein microarrays: promising tools for proteomic research. Proteomics 3, 2155-2166 (2003). Detailed review of protein microarray technology.
    • (2003) Proteomics , vol.3 , pp. 2155-2166
    • Templin, M.F.1    Stoll, D.2    Schwenk, J.M.3
  • 38
    • 2342633297 scopus 로고    scopus 로고
    • Protein arrays: Proteomics in multiplex
    • Melton L. Protein arrays: proteomics in multiplex. Nature 429, 101-107 (2004).
    • (2004) Nature , vol.429 , pp. 101-107
    • Melton, L.1
  • 39
    • 0036079692 scopus 로고    scopus 로고
    • The SELDI-TOF MS approach to proteomics: Protein profiling and biomarker identification
    • Issaq HJ, Veenstra TD, Conrads TP, Felschow D. The SELDI-TOF MS approach to proteomics: protein profiling and biomarker identification. Biochem. Biophys. Res. Comm. 292, 587-592 (2002).
    • (2002) Biochem. Biophys. Res. Comm. , vol.292 , pp. 587-592
    • Issaq, H.J.1    Veenstra, T.D.2    Conrads, T.P.3    Felschow, D.4
  • 40
    • 10744223905 scopus 로고    scopus 로고
    • Serum diagnosis of pancreatic adenocarcinoma using surface enhanced laser desorption and ionization mass spectrometry
    • Koopman J, Zhang Z, White N et al. Serum diagnosis of pancreatic adenocarcinoma using surface enhanced laser desorption and ionization mass spectrometry. Clin. Canc. Res. 10, 860-868 (2004).
    • (2004) Clin. Canc. Res. , vol.10 , pp. 860-868
    • Koopman, J.1    Zhang, Z.2    White, N.3
  • 42
    • 0037086181 scopus 로고    scopus 로고
    • Identification of hepatocarcinoma-intestine-pancreas/pancreatitis associated protein 1 as a biomarker for pancreatic ductal adenocarcinoma by protein biochip technology
    • Rosty C, Christa L, Kudzal S et al. Identification of hepatocarcinoma-intestine-pancreas/pancreatitis associated protein 1 as a biomarker for pancreatic ductal adenocarcinoma by protein biochip technology. Cancer Res. 62, 1868-1875 (2002).
    • (2002) Cancer Res. , vol.62 , pp. 1868-1875
    • Rosty, C.1    Christa, L.2    Kudzal, S.3
  • 43
    • 0027733796 scopus 로고
    • K-ras oncogene activation in adenocarcinomas of the human pancreas: A study of 82 carcinomas using a combination of mutant-enriched polymerase chain reaction analysis and allele-specific oligonucleotide hybridization
    • Hruban RH, van Mansfield ADM, Offerhaus GJA et al. K-ras oncogene activation in adenocarcinomas of the human pancreas: a study of 82 carcinomas using a combination of mutant-enriched polymerase chain reaction analysis and allele-specific oligonucleotide hybridization. Am. J. Pathol. 143, 545-554 (1993).
    • (1993) Am. J. Pathol. , vol.143 , pp. 545-554
    • Hruban, R.H.1    Van Mansfield, A.D.M.2    Offerhaus, G.J.A.3
  • 44
    • 9144266295 scopus 로고    scopus 로고
    • Preinvasive and invasive ductal pancreatic cancer and its early detection in the mouse
    • Hingorani SR, Petricoin EF, Maitra A et al. Preinvasive and invasive ductal pancreatic cancer and its early detection in the mouse. Cancer Cell. 4, 437-450 (2003).
    • (2003) Cancer Cell. , vol.4 , pp. 437-450
    • Hingorani, S.R.1    Petricoin, E.F.2    Maitra, A.3
  • 45
    • 0142143227 scopus 로고    scopus 로고
    • Current developments in SELDI affinity technology
    • Tang N, Tornatore P, Weinberger SR. Current developments in SELDI affinity technology. Mass Spec. Rev. 23, 34-44 (2004). Very good review on surface-enhanced laser desorption/ionization technology and its application as a diagnostic platform.
    • (2004) Mass Spec. Rev. , vol.23 , pp. 34-44
    • Tang, N.1    Tornatore, P.2    Weinberger, S.R.3
  • 46
    • 0036917313 scopus 로고    scopus 로고
    • Chips for proteomics: A new tool or just hype
    • James P. Chips for proteomics: a new tool or just hype. Biotechniques 33, S4-S13 (2002).
    • (2002) Biotechniques , vol.33
    • James, P.1
  • 47
    • 1842559788 scopus 로고    scopus 로고
    • Reproducibility of SELDI TOF protein patterns in serum: Comparing data sets from different experiments
    • Baggerly KA, Morris JS, Coombes KR. Reproducibility of SELDI TOF protein patterns in serum: comparing data sets from different experiments. Bioinformatics 22, 777-785 (2004).
    • (2004) Bioinformatics , vol.22 , pp. 777-785
    • Baggerly, K.A.1    Morris, J.S.2    Coombes, K.R.3
  • 48
    • 0037607633 scopus 로고    scopus 로고
    • Informatics and data management in proteomics
    • Fenyo D, Beavis RC. Informatics and data management in proteomics. Trends Biotechnol. 20(S), S35-S38 (2002). Good summary of the data management issues in proteomics.
    • (2002) Trends Biotechnol. , vol.20 S
    • Fenyo, D.1    Beavis, R.C.2
  • 49
    • 0033930882 scopus 로고    scopus 로고
    • BIND-data specification for storing and describing biomolecular interactions, molecular complexes and pathways
    • Bader GD, Hogue CW. BIND-data specification for storing and describing biomolecular interactions, molecular complexes and pathways. Bioinformatics 16, 465-477 (2000).
    • (2000) Bioinformatics , vol.16 , pp. 465-477
    • Bader, G.D.1    Hogue, C.W.2
  • 50
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho Y, Gruhler A, Heilbut A et al. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415, 180-183 (2002).
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1    Gruhler, A.2    Heilbut, A.3
  • 51
    • 3042541639 scopus 로고    scopus 로고
    • Bioinformatics strategies for proteomic profiling
    • White CN, Chan D, Zhang Z. Bioinformatics strategies for proteomic profiling. Clin. Biochem. 37, 636-641 (2004).
    • (2004) Clin. Biochem. , vol.37 , pp. 636-641
    • White, C.N.1    Chan, D.2    Zhang, Z.3
  • 52
    • 0042367739 scopus 로고    scopus 로고
    • Point: Patterns in biological fluids: Do they represent the future of cancer diagnostics?
    • Diamandis EP. Point: patterns in biological fluids: do they represent the future of cancer diagnostics? Clin. Chem. 49, 1272-1275 (2003).
    • (2003) Clin. Chem. , vol.49 , pp. 1272-1275
    • Diamandis, E.P.1
  • 53
    • 9144232912 scopus 로고    scopus 로고
    • UniProt: The universal protein knowledge database
    • Apweiler R, Bairoch A, Wu CH et al. UniProt: the universal protein knowledge database. Nucleic Acids Res. 32, D115-D119 (2004).
    • (2004) Nucleic Acids Res. , vol.32
    • Apweiler, R.1    Bairoch, A.2    Wu, C.H.3
  • 54
    • 2942557190 scopus 로고    scopus 로고
    • Annotation of post-translational modifications in the Swiss-Prot knowledge base
    • Farriol-Mathis N, Garavelli JS, Boeckmann B et al. Annotation of post-translational modifications in the Swiss-Prot knowledge base. Proteomics 4, 1537-1550 (2004).
    • (2004) Proteomics , vol.4 , pp. 1537-1550
    • Farriol-Mathis, N.1    Garavelli, J.S.2    Boeckmann, B.3


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