Phylogenetic relationships and chromosome number evolution in Passiflora

Systematic Botany

Volumn 31, Issue 1, 2006, Pages 138-150

  Hansen, A Katie ^a   Gilbert, Lawrence E ^a   Simpson, Beryl B ^a   Downie, Stephen R ^b   Cervi, Armando C ^c   Jansen, Robert K ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

^b UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^c FEDERAL UNIVERSITY OF PARANÁ   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

PASSIFLORA; PASSIFLORA AURICULATA; PASSIFLORA BIFLORA; PASSIFLORA EDULIS; PASSIFLORACEAE;

EID: 33645221809     PISSN: 03636445     EISSN: 03636445     Source Type: Journal    
DOI: 10.1600/036364406775971769     Document Type: Article

References (84)

1. ADAMS, S. P., I. J. LEITCH, M. D. BENNETT, M. W. CHASE, and A. R. LEITCH. 2000. Ribosomal DNA evolution and phylogeny in Aloe (Asphodelaceae). American Journal of Botany 87: 1578-1583.
2. ALDRICH, J., B. W. CHERNEY, E. MERLIN, and L. CHRISTOPHERSON. 1988. The role of insertions/deletions in the evolution of the intergenic region between psbA and trnH in the chloropast genome. Current Genetics 14: 137-146.
3. AMELA-GARCIA, M., B. GALATI, and A. ANTON. 2002. Microsporogenesis, microgametogenesis and pollen morphology of Passiflora spp. (Passifloraceae). Botanical Journal of the Linnean Society 139: 338-394.
4. BAILEY, C. D. and J. J. DOYLE. 1999. Potential phylogenetic utility of the low-copy nuclear gene pistillata in dicotyledonous plants: Comparison to nrDNA ITS and trnL intron in Sphaerocardamum and other Brassicaceae. Molecular Phylogenetics and Evolution 13: 20-30.
5. BALDWIN, J. 1949. Polyploidy in Passiflora lutea. Rhodora 51: 29.
6. BARBER, J. C., J. F. ORTEGA, A. SANTOS-GUERRA, K. TURNER, and R. JANSEN. 2002. Origin of Macaronesian Sideritis L. (Lamioideae: Lamiaceae) inferred from nuclear and chloroplast sequence datasets. Molecular Phylogenetics and Evolution 23: 293-306.
7. BEAL, P. 1969. Chromosome numbers of the exotic Passiflora species in Australia. Queensland Journal of Agricultural and Animal Sciences 26: 407-421.
8. _. 1971. Chromosome numbers in some recently introduced species of Passiflora in Australia. Queensland Journal of Agricultural and Animal Sciences 28: 179-180.
9. BERRY, P. 1987. Chromosome number reports XCV. Taxon 36: 493.
10. BOWDEN, W. 1940. The chromosome complement and its evolutionary relationship to cold resistance in the higher plants. Chronicles of Botany 6: 123-125.
11. _. 1945. A list of chromosome numbers in higher plants. II. Menispermaceae to Verbenaceae. American Journal of Botany 32: 191-201.
12. BROWER, A. V. Z. 1997. The evolution of ecologically important characters in Heliconius butterflies (Lepidoptera: Nymphalidae): a cladistic review. Zoological Journal of the Linnean Society 119: 457-472.
13. BRUNEAU, A., J. J. DOYLE, and J. D. PALMER. 1990. A chloroplast DNA inversion as a subtribal character in the Phaseoleae (Leguminosae). Systematic Botany 15: 378-386.
14. CLEGG, M. T., B. S. GAUT, G. H. LEARN JR., and B. R. MORTON. 1994. Rates and patterns of chloroplast DNA evolution. Proceedings of the National Academy of Sciences USA 91: 6795-6801.
15. CURTIS, S. and M. T. CLEGG. 1984. Molecular evolution of chloroplast DNA sequences. Molecular Biology and Evolution 1: 291-301.
16. DE MELO, N. F. and M. GUERRA. 2003. Variability of the 5S and 45S rDNA sites in Passiflora L. species with distinct base chromosome numbers. Annals of Botany 92: 309-316.
17. _, A. C. CERVI, and M. GUERRA. 2001. Karyology and cytotaxonomy of the genus Passiflora L. (Passifloraceae). Plant Systematics and Evolution 226: 69-84.
18. DE ROCHER, E., K. HARKINS, D. GALBRAITH, and H. BOHNERT. 1990. Developmentally related systemic endopolyploidy in succulents with small genomes. Science 250: 99-101.
19. DE WILDE, J. 1972. The indigenous Old World Passifloras. Blumea 20: 227-250.
20. DELIDOW, B. J., J. LYNCH, J. PELUSO, and B. A. WHITE. 1993. Polymerase chain reaction in PCR protocols, methods in molecular biology, eds. B. A. White. Totowa: Humana Press Inc.
21. DIERS, L. 1961. Der Anteil an Polypliden in den Vegetationsgürteln der Westkordillere Perus. Zeitschrift für Botanik 49: 443.
22. DOWNIE, S. R. and J. D. PALMER. 1992. Use of chloroplast DNA rearrangements in reconstructing plant phylogeny. Pages 14-35 in Molecular systematics of plants, eds. P. S. Soltis, D. E. Soltis, and J. J. Doyle. New York: Chapman and Hall.
23. _, E. LLANAS, and D. S. KATZ-DOWNIE. 1996. Multiple independent losses of the rpoC1 intron in angiosperm chloroplast DNA's. Systematic Botany 21: 135-151.
24. DOYLE, J. J. and J. L. DOYLE. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf material. Phytochemistry Bulletin 19: 11-15.
25. ESCOBAR, L. K. 1986. New species and varieties of Passiflora Passifloraceae from the Andes of South America. Systematic Botany 11: 88-97.
26. _. 1988. Passifloraceae. Pages 1-138 in Flora de Colombia. Bogotá: Colciencias.
27. FABIJAN, D., J. PACKER, and K. DENFORD. 1987. The taxonomy of the Viola nuttali complex. Canadian Journal of Botany 65: 2562-2580.
28. FEUILLET, C. and J. C. MACDOUGAL. 1999. Infrageneric classification of Passiflora in XVI International Botanical Congress, St. Louis, Mo.
29. _. 2003 [2004]. A new infrageneric classification of Passiflora L. (Passifloraceae) Passiflora 13 (2): 34-35, 37-38.
30. GADELLA, T. 1969. Chromosome numbers of some angiosperms collected in Cameroon and the Ivory Coast. Proceedings of the Royal Netherlands Academy of Science C 72: 306-310.
31. _. 1970. Chromosome numbers of some Angiospermae collected in Cameroon and the Ivory Coast. Acta Botanica Neerlandica 19: 431-435.
32. GILBERT, L. E. 1975. Ecological consequences of a coevolved mutualism between butterflies and plants. Austin: University of Texas Press.
33. _ and J. M. MACDOUGAL. 2000. Passiflora microstipula, a new species of Passifloraceae from southeast Mexico. Lundellia 3: 1-5.
34. GOLDMAN, N., J. P. ANDERSON, and A. G. RODRIGO. 2000. Likelihood-based tests of topologies in phylogenetics. Systematic Biology 49: 652-70.
35. GOLENBERG, E. M., M. T. CLEGG, M. L. DURBIN, J. DOEBLEY, and D. P. MA. 1993. Evolution of a noncoding region of the chloroplast genome. Molecular Phylogenetics and Evolution 2: 52-64.
36. GREEN, P. S. 1972. Passiflora in Australia and the Pacific. Kew Bulletin 26: 539-558.
37. GUERRA, M. and S. DOS. 1986. Citogenética de angiospermas coletadas en Pernambuco, I. Revista Brasileria de Genética 9: 21-40.
38. HAIR, J. and E. BEUZENBERG. 1959. Contributions to a chromosome atlas of the New Zealand Flora 2. New Zealand Journal of Science 1: 148-156.
39. HARMS, H. 1925. Passifloraceae. Pages 470-507 in Pflazenfamilien eds. A. Engler and K. Prantl. Leipzig: W. Engelmann.
40. HARVEY, M. 1966. IOPB chromosome number reports VII. Taxon 15: 155-163.
41. HEISER, C. 1963. Numeración cromosómica de plantas ecuatorianas. Ciencia y Naturaleza 6: 2-6.
42. HEITZ, E. 1926. Der Nachweis der Chromosomen. Vergleichende studien über ihre Zahl Grösse und Form. Pflanzenreich. I. Zeitschrift für Botanik 18: 625-681.
43. HILLIS, D. M. 1995. Approaches for assessing phylogenetic accuracy. Systematic Biology 44: 3-3.
44. HUELSENBECK, J. P. and F. RONQUIST. 2003. MrBayes: Bayesian inference of phylogeny. http://morphbank.ebc.uu.se/mrbayes/info.php.
45. JANAKI AMMAL, E. 1945. Chromosome atlas of cultivated plants, eds. C. D. Darlington and E. K. Janaki Ammal. London: George Allen and Unwin Ltd.
46. JANSEN, R. K. and J.D. PALMER. 1987. A chloroplast DNA inversion marks and ancient evolutionary split in the sunflower family (Asteraceae). Proceedings of the National Academy of Sciences USA 84: 5818-5822.
47. KAY, E. 2000. Observations on the pollination of Passiflora penduli-flora. Biotropica 33: 709-713.
48. KELCHNER, S. A. 2000. The evolution of non-coding chloroplast DNA and its application in plant systematics. Annals of the Missouri Botanical Garden 87: 482-498.
49. KILLIP, E. P. 1938. The American species of Passifloraceae. Publications of the Field Museum of Natural History Botanical Series 19: 1-613.
50. KUGLER, E. E., and L. A. KING. 2004. A brief history of the passionflower. Pages 15-26 in Passiflora: passionflowers of the world by T. Ulmer and J. MacDougal. Portland: Timber Press.
51. LA COUR, L. 1952. Chromosome counts of species and varieties of garden plants. Annual Report-John Innes Horticultural Institute 41: 23.
52. LLOYD, R. 1963. Tetraploid Passiflora incarnata in North Carolina. Rhodora 65: 79-80.
53. LOOCKERMAN, D. and R. K. JANSEN. 1996. The use of herbarium material for DNA studies. Pages 205-220 in Sampling the green world: innovative concepts of collection, preservation and storage of plant diversity, eds. T. Stuessy and S. Sohmer. New York: Columbia University Press.
54. MACDOUGAL, J. C. 1994. Revision of subgenus Decaloba, section Pseudodysosmia (Passifloraceae). Systematic Botany Monographs 41: 1-146.
55. _ and A. K. HANSEN. 2003. A new section of Passiflora, subgenus Decaloba (Passifloraceae), from Central America, with two new species. Novon 13: 459-466.
56. MADDISON, W. and D. MADDISON. 2000. MacClade, version 4.0. Sunderland: Sinauer Associates Inc.
57. MASTERS, M. T. 1872. Passifloraceae. Pages 536-540 in Flora Brasiliensis, ed. C. F. P. de Martius. Leipzig: Monachii.
58. MORAWETZ, W. 1986. Remarks on karyological differentiation patterns in tropical woody plants. Plant Systematics and Evolution 152: 49-100.
59. MORTON, B. R. and M. T. CLEGG. 1995. Neighboring base composition is strongly correlated with base substitution bias in a region of the chloroplast genome. Journal of Molecular Evolution 41: 597-603.
60. MUSCHNER, V., A. LORENZ, A. C. CERVI, S. BONATTO, T. SOUZACHIES, F. SALZANO, and L. FREITAS. 2003. A first molecular analysis of Passiflora (Passifloraceae). American Journal of Botany 90: 1229-1238.
61. POSADA, D. and K. CRANDALL. 1998. ModelTest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
62. POTTER, D., J. J. LUBY, and R. E. HARRISON. 2000. Phylogenetic relationships among species of Fragaria (Rosaceae) inferred from non-coding nuclear and chloroplast DNA sequences. Systematic Botany 25: 337-348.
63. PRESTING, D. 1965. Zür Morphologieder Pollenkörner der Passi-floraceen. Pollen et Spores 7: 193-247.
64. RAMBAUT, A. and N. GRASSLY. 1997. Seq-Gen: an application for the monte carlo simulation of DNA sequence evolution along phylogenetic trees. Computational Applied Biosciences 13: 235-238.
65. RAUBESON, L. A. and R. K. JANSEN. 1992. A rare chloroplast-DNA structural mutation is shared by all conifers. Biochemical Systematics and Ecology 20: 17-24.
66. _ and _. 2004. Chloroplast genomes of plants. Pages 45-68 in Diversity and evolution of plants - genotypic and phenotypic variation in higher plants, ed. R. Henry. London: CABI Publishing.
67. RAVEN, P. 1975. The bases of angiosperm phylogeny: cytology. Annals of the Missouri Botanical Garden 62: 724-764.
68. SAMBROOK, J., E. F. FRITSCH, and T.MANIATIS. 1989. Molecular cloning: a laboratory manual, ed. 2. New York: Cold Springs Harbor Laboratory Press.
69. SIMMONS, M. P. and H. OCHOTERENA. 2000. Gaps as characters in sequence-based phylogenetic analyses. Systematic Biology 49: 369-381.
70. SMALL, R. L., J. A. RYBURN, R. C. CRONN, T. SEELANAN, and J. F. WENDEL. 1998. The tortoise and the hare: choosing between noncoding plastome and nuclear Adh sequences for phylogeny reconstruction in a recently diverged plant group. American Journal of Botany 85: 1301-1315.
71. SNOW, N. and J.M. MACDOUGAL. 1993. New chromosome reports in Passiflora (Passifloraceae). Systematic Botany 18: 261-273.
72. SOLIS-NEFFA, V. and A. FERNANDEZ. 1993. Estudios cromósomicos en especies de Turnera (Turneraceae). Bonplandia 7: 101-118.
73. SPIRLET, M. L. 1965. Utilization taxonomique des grains de pollen de Passifloraceaées. Pollen et Spores 7: 249-301.
74. STOREY, W. 1950. Chromosome numbers of some species of Passiflora occurring in Hawaii. Pacific Science 4: 37-42.
75. SUZUKI, Y., G. V. GLAZKO, and M. NEI. 2002. Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceedings of the National Academy of Sciences USA 99: 16138-16143.
76. SWOFFORD, D. L. 2002. PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sunderland: Sinauer Associates.
77. _, G. OLSEN, P. WADDEL, and D. M. HILLIS. 1996. Phylogenetic inference. Pages 407-515 in Molecular systematics, eds. D. M. Hillis, C. Moritz, and B. K. Mable. Sunderland: Sinauer Associates.
78. TABERLET, P. L. GIELLY, G. PAUTOU, and J. BOUVET. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1110.
79. THOMPSON, J. D., D. G. HIGGINS, and T. J. GIBSON. 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673.
80. ULMER, T. and J. MACDOUGAL. 2004. Passiflora: passion flowers of the world. Portland: Timber Press.
81. URIBE-URIBE, L. 1955. Passifloraceas y Begoniaceas de la Real Expedición Botánica de Nuevo Reino de Granada. Ediciones Cultura Hispánica 26: 1-98.
82. VAN HAM, R. C. H. J., H. T. HART, T. H. M. MES, and J. M. SANDBRINK. 1994. Molecular evolution of noncoding regions of the chloroplast genome in the Crassulaceae and related species. Current Genetics 25: 558-566.
83. WILCOX, T. P., D. J. ZWICKL, T. A. HEATH, and D. M. HILLIS. 2002. Phylogenetic relationships of the dwarf boas and a comparison of Bayesian and bootstrap measures of phylogenetic support. Molecular Phylogenetics and Evolution 25: 361-371.
84. YOCKTENG, R. S. and S. NADOT. 2004. Phylogenetic relationships among Passiflora species based on the Glutamine Synthase nuclear gene expressed in the chloroplast (ncpGS). Molecular Phylogenetics and Evolution 31: 379-396.