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Volumn 12, Issue 7, 2006, Pages 1025-1032

Identification of differently expressed genes in human colorectal adenocarcinoma

Author keywords

Colorectal adenocarcinoma; Gene expression profiling; Reverse transcriptase real time quantitative PCR; Suppression subtractive hybridization

Indexed keywords

1 ALKYL 2 ACETYLGLYCEROPHOSPHOCHOLINE ESTERASE; ACYL COENZYME A DESATURASE; ALPHA TUBULIN; ALPHA6 INTEGRIN; BETA TUBULIN; CALMODULIN; CHAPERONIN; COMPLEMENTARY DNA; CYTOCHROME C OXIDASE; FATTY ACID BINDING PROTEIN; GUANOSINE TRIPHOSPHATASE ACTIVATING PROTEIN; HEAT SHOCK PROTEIN 10; INITIATION FACTOR 3; INITIATION FACTOR 4E; PHOSPHORYLASE KINASE; PROTEASOME; PROTEIN CAPZ; PROTHYMOSIN ALPHA; RAS PROTEIN; RIBOSOME PROTEIN; RNA; SIGNAL RECOGNITION PARTICLE; TRANSCRIPTION FACTOR SOX9; ZINC FINGER PROTEIN;

EID: 33645105705     PISSN: 10079327     EISSN: None     Source Type: Journal    
DOI: 10.3748/wjg.v12.i7.1025     Document Type: Article
Times cited : (16)

References (44)
  • 1
    • 0242667616 scopus 로고    scopus 로고
    • Genetics of colorectal cancer
    • Chan WM, Pang CP, Lam DS. Genetics of colorectal cancer. N Engl J Med 2003; 348: 2361-2362
    • (2003) N Engl J Med , vol.348 , pp. 2361-2362
    • Chan, W.M.1    Pang, C.P.2    Lam, D.S.3
  • 2
    • 0026648941 scopus 로고
    • Genetic alterations in the adenoma-carcinoma sequence
    • Cho KR, Vogelstein B. Genetic alterations in the adenoma-carcinoma sequence. Cancer 1992; 70: 1727-1731
    • (1992) Cancer , vol.70 , pp. 1727-1731
    • Cho, K.R.1    Vogelstein, B.2
  • 4
    • 0027203657 scopus 로고
    • Over-expression of the c-myc proto-oncogene in colorectal carcinoma
    • Smith DR, Myint T, Goh HS. Over-expression of the c-myc proto-oncogene in colorectal carcinoma. Br J Cancer 1993; 68: 407-413
    • (1993) Br J Cancer , vol.68 , pp. 407-413
    • Smith, D.R.1    Myint, T.2    Goh, H.S.3
  • 5
    • 0035071528 scopus 로고    scopus 로고
    • Plasma levels of amyloid beta proteins did not differ between subjects taking statins and those not taking statins
    • ToKDda T, Tamaoka A, Matsuno S, SaKDrai S, Shimada H, Morita H, Ikeda S. Plasma levels of amyloid beta proteins did not differ between subjects taking statins and those not taking statins. Ann Neurol 2001; 49: 546-547
    • (2001) Ann Neurol , vol.49 , pp. 546-547
    • Tokdda, T.1    Tamaoka, A.2    Matsuno, S.3    Sakdrai, S.4    Shimada, H.5    Morita, H.6    Ikeda, S.7
  • 6
    • 0028171968 scopus 로고
    • Mediation of c-Myc-induced apoptosis by p53
    • Hermeking H, Eick D. Mediation of c-Myc-induced apoptosis by p53. Science 1994; 265: 2091-2093
    • (1994) Science , vol.265 , pp. 2091-2093
    • Hermeking, H.1    Eick, D.2
  • 7
    • 0031265032 scopus 로고    scopus 로고
    • Current data on the role of APC protein in the origin of colorectal cancer
    • Bonneton C, Larue L, Thiery JP. Current data on the role of APC protein in the origin of colorectal cancer. Bull Cancer 1997; 84: 1053-1060
    • (1997) Bull Cancer , vol.84 , pp. 1053-1060
    • Bonneton, C.1    Larue, L.2    Thiery, J.P.3
  • 8
    • 0035054387 scopus 로고    scopus 로고
    • Deficient DNA mismatch repair: A common etiologic factor for colon cancer
    • Peltomaki P. Deficient DNA mismatch repair: a common etiologic factor for colon cancer. Hum Mol Genet 2001; 10: 735-740
    • (2001) Hum Mol Genet , vol.10 , pp. 735-740
    • Peltomaki, P.1
  • 9
    • 0032852979 scopus 로고    scopus 로고
    • Immonohistochemistry for hMLH1 and hMLH2: A practical test for DNA mismatch repair deficient tumors
    • Marcus VA, Mad Lensky L, Gryfe R et al. Immonohistochemistry for hMLH1 and hMLH2: a practical test for DNA mismatch repair deficient tumors. An J surg Pathol 1999; 23: 1248-1255
    • (1999) An J Surg Pathol , vol.23 , pp. 1248-1255
    • Marcus, V.A.1    Mad Lensky, L.2    Gryfe, R.3
  • 11
    • 33645101657 scopus 로고    scopus 로고
    • The construction of cDNA suppression subtractive library of human rectum adenocarcinomas
    • Yao Chen, Yizheng Zhang. The construction of cDNA suppression subtractive library of human rectum adenocarcinomas. J U S Lymph Oncogy. 2002; 1: 9-14
    • (2002) J U S Lymph Oncogy , vol.1 , pp. 9-14
    • Yao, C.1    Yizheng, Z.2
  • 12
    • 0033559117 scopus 로고    scopus 로고
    • Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes
    • Yang GP, Ross DT, KDang WW, Brown PO, Weigel RJ. Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes. Nucleic Acids Res 1999; 27: 1517-1523
    • (1999) Nucleic Acids Res , vol.27 , pp. 1517-1523
    • Yang, G.P.1    Ross, D.T.2    Kdang, W.W.3    Brown, P.O.4    Weigel, R.J.5
  • 14
    • 0142056091 scopus 로고    scopus 로고
    • Detection of differentially expressed HES-6 gene in metastatic colon carcinoma by combination of suppression subtractive hybridization and cDNA library array
    • Swearingen ML, Sun D, Bourner M, Weinstein EJ. Detection of differentially expressed HES-6 gene in metastatic colon carcinoma by combination of suppression subtractive hybridization and cDNA library array. Cancer Lett 2003; 198: 229-239
    • (2003) Cancer Lett , vol.198 , pp. 229-239
    • Swearingen, M.L.1    Sun, D.2    Bourner, M.3    Weinstein, E.J.4
  • 17
    • 85047699572 scopus 로고    scopus 로고
    • Identification of genes over-expressed in small cell lung carcinoma using suppression subtractive hybridization and cDNA microarray expression analysis
    • Bangur CS, Switzer A, Fan L, Marton MJ, Meyer MR, Wang T. Identification of genes over-expressed in small cell lung carcinoma using suppression subtractive hybridization and cDNA microarray expression analysis. Oncogene 2002; 21: 3814-3825
    • (2002) Oncogene , vol.21 , pp. 3814-3825
    • Bangur, C.S.1    Switzer, A.2    Fan, L.3    Marton, M.J.4    Meyer, M.R.5    Wang, T.6
  • 18
    • 0142085695 scopus 로고    scopus 로고
    • Upregulation of the truncated basic hair keratin 1(hHb1-DeltaN) in carcinoma cells by Epstein-Barr virus (EBV)
    • Nishikawa J, Kiss C, Imai S, Takada K, Okita K, Klein G, Szekely L. Upregulation of the truncated basic hair keratin 1(hHb1-DeltaN) in carcinoma cells by Epstein-Barr virus (EBV). Int J Cancer 2003; 107: 597-602
    • (2003) Int J Cancer , vol.107 , pp. 597-602
    • Nishikawa, J.1    Kiss, C.2    Imai, S.3    Takada, K.4    Okita, K.5    Klein, G.6    Szekely, L.7
  • 19
    • 0037427834 scopus 로고    scopus 로고
    • Identification of differentially expressed genes in immortalized human bronchial epithelial cell line as a model for in vitro study of lung carcinogenesis
    • Qian An, Manuela Pacyna-gengelbach, Karsten Schlung et al. Identification of differentially expressed genes in immortalized human bronchial epithelial cell line as a model for in vitro study of lung carcinogenesis. Int J cancer 2002; 103: 194-204.
    • (2002) Int J Cancer , vol.103 , pp. 194-204
    • Qian, A.1    Manuela, P.-G.2    Karsten, S.3
  • 20
    • 0036256478 scopus 로고    scopus 로고
    • Isolation of novel differentially expressed genes related to human glioma using cDNA microarray and characterizations of two novel full-length
    • Qi ZY, Li Y, Ying K, Wu CQ, Tang R, Zhou ZX, Chen ZP, Hui GZ, Xie Y. Isolation of novel differentially expressed genes related to human glioma using cDNA microarray and characterizations of two novel full-length genes. J Neurooncol 2002; 56: 197-208
    • (2002) Genes J Neurooncol , vol.56 , pp. 197-208
    • Qi, Z.Y.1    Li, Y.2    Ying, K.3    Wu, C.Q.4    Tang, R.5    Zhou, Z.X.6    Chen, Z.P.7    Hui, G.Z.8    Xie, Y.9
  • 21
    • 0042021521 scopus 로고    scopus 로고
    • Identification of tissue-specific genes in nasopharyngeal epithelial tissue and differentially expressed genes in nasopharyngeal carcinoma by suppression subtractive hybridization and cDNA microarray
    • Zhang B, Nie X, Xiao B, Xiang J, Shen S, Gong J, Zhou M, Zhu S, Zhou J, Qian J, Lu H, He X, Li X, Hu G, Li G. Identification of tissue-specific genes in nasopharyngeal epithelial tissue and differentially expressed genes in nasopharyngeal carcinoma by suppression subtractive hybridization and cDNA microarray. Genes Chromosomes Cancer 2003; 38: 80-90
    • (2003) Genes Chromosomes Cancer , vol.38 , pp. 80-90
    • Zhang, B.1    Nie, X.2    Xiao, B.3    Xiang, J.4    Shen, S.5    Gong, J.6    Zhou, M.7    Zhu, S.8    Zhou, J.9    Qian, J.10    Lu, H.11    He, X.12    Li, X.13    Hu, G.14    Li, G.15
  • 22
    • 0242405575 scopus 로고    scopus 로고
    • Advantages and limitations of microarray technology in human cancer
    • Russo G, Zegar C, Giordano A. Advantages and limitations of microarray technology in human cancer. Oncogene 2003; 22: 6497-6507
    • (2003) Oncogene , vol.22 , pp. 6497-6507
    • Russo, G.1    Zegar, C.2    Giordano, A.3
  • 25
    • 0037757606 scopus 로고    scopus 로고
    • Biomarkers of human cutaneous squamous cell carcinoma from tissues and cell lines identified by DNA microarrays and qRT-PCR
    • Dooley TP, Reddy SP, Wilborn TW, Davis RL. Biomarkers of human cutaneous squamous cell carcinoma from tissues and cell lines identified by DNA microarrays and qRT-PCR. Biochem Biophys Res Commun 2003; 306: 1026-1036
    • (2003) Biochem Biophys Res Commun , vol.306 , pp. 1026-1036
    • Dooley, T.P.1    Reddy, S.P.2    Wilborn, T.W.3    Davis, R.L.4
  • 27
    • 2942538291 scopus 로고    scopus 로고
    • Sensitivity and reproducibility of standardized-competitive RT-PCR for transcript quantification and its comparison with real time RT-PCR
    • Pagliarulo V, George B, Beil SJ, Groshen S, Laird PW, Cai J, Willey J, Cote RJ, Datar RH. Sensitivity and reproducibility of standardized-competitive RT-PCR for transcript quantification and its comparison with real time RT-PCR. Mol Cancer 2004; 3: 5
    • (2004) Mol Cancer , vol.3 , pp. 5
    • Pagliarulo, V.1    George, B.2    Beil, S.J.3    Groshen, S.4    Laird, P.W.5    Cai, J.6    Willey, J.7    Cote, R.J.8    Datar, R.H.9
  • 29
    • 2442702517 scopus 로고    scopus 로고
    • TagMan RT-PCR assay coupled with capillary electrophoresis for quantification and identification of bcr-abl transcript type
    • Luthra R, Sanchez-Vega B, Jeffrey Medeiros L. TagMan RT-PCR assay coupled with capillary electrophoresis for quantification and identification of bcr-abl transcript type. Mod Pathol 2004; 17: 96-103
    • (2004) Mod Pathol , vol.17 , pp. 96-103
    • Luthra, R.1    Sanchez-Vega, B.2    Jeffrey Medeiros, L.3
  • 30
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001; 29: e45
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1
  • 31
    • 18744432001 scopus 로고    scopus 로고
    • A new class of homogeneous nucleic acid probes based on specific displacement hybridization
    • Li Q, Luan G, Guo Q, Liang J. A new class of homogeneous nucleic acid probes based on specific displacement hybridization. Nucleic Acids Res 2002; 30: E5
    • (2002) Nucleic Acids Res , vol.30
    • Li, Q.1    Luan, G.2    Guo, Q.3    Liang, J.4
  • 32
    • 2342656309 scopus 로고    scopus 로고
    • Role of eIF3 p170 in controlling synthesis of ribonucleotide reductase M2 and cell growth
    • Dong Z, Liu LH, Han B, Pincheira R, Zhang JT. Role of eIF3 p170 in controlling synthesis of ribonucleotide reductase M2 and cell growth. Oncogene 2004; 23: 3790-3801
    • (2004) Oncogene , vol.23 , pp. 3790-3801
    • Dong, Z.1    Liu, L.H.2    Han, B.3    Pincheira, R.4    Zhang, J.T.5
  • 34
    • 0000958271 scopus 로고    scopus 로고
    • Toward understanding SOX9 function in chondrocyte differentiation
    • Lefebvre V, de Crombrugghe B. Toward understanding SOX9 function in chondrocyte differentiation. Matrix Biol 1998; 16: 529-540
    • (1998) Matrix Biol , vol.16 , pp. 529-540
    • Lefebvre, V.1    de Crombrugghe, B.2
  • 35
    • 0037697096 scopus 로고    scopus 로고
    • Transcriptional co-activators CREB-binding protein and p300 regulate chondrocyte-specific gene expression via association with Sox9
    • Tsuda M, Takahashi S, Takahashi Y, Asahara H. Transcriptional co-activators CREB-binding protein and p300 regulate chondrocyte-specific gene expression via association with Sox9. J Biol Chem 2003; 278: 27224-27229
    • (2003) J Biol Chem , vol.278 , pp. 27224-27229
    • Tsuda, M.1    Takahashi, S.2    Takahashi, Y.3    Asahara, H.4
  • 36
    • 0037343473 scopus 로고    scopus 로고
    • Sox9, a master regulator of chondrogenesis, distinguishes mesenchymal chondrosarcoma from other small blue round cell tumors
    • Wehrli BM, Huang W, De Crombrugghe B, Ayala AG, Czerniak B. Sox9, a master regulator of chondrogenesis, distinguishes mesenchymal chondrosarcoma from other small blue round cell tumors. Hum Pathol 2003; 34: 263-269
    • (2003) Hum Pathol , vol.34 , pp. 263-269
    • Wehrli, B.M.1    Huang, W.2    De Crombrugghe, B.3    Ayala, A.G.4    Czerniak, B.5
  • 37
    • 0034067651 scopus 로고    scopus 로고
    • Phosphorylation of SOX9 by cyclic AMP-dependent protein kinase A enhances SOX9's ability to transactivate a Col2a1 chondrocyte-specific enhancer
    • Huang W, Zhou X, Lefebvre V, de Crombrugghe B. Phosphorylation of SOX9 by cyclic AMP-dependent protein kinase A enhances SOX9's ability to transactivate a Col2a1 chondrocyte-specific enhancer. Mol Cell Biol 2000; 20: 4149-4158
    • (2000) Mol Cell Biol , vol.20 , pp. 4149-4158
    • Huang, W.1    Zhou, X.2    Lefebvre, V.3    de Crombrugghe, B.4
  • 38
    • 18744374448 scopus 로고    scopus 로고
    • RAR agonists stimulate SOX9 gene expression in breast cancer cell lines: Evidence for a role in retinoid-mediated growth inhibition
    • Afonja O, Raaka BM, Huang A, Das S, Zhao X, Helmer E, Juste D, Samuels HH. RAR agonists stimulate SOX9 gene expression in breast cancer cell lines: evidence for a role in retinoid-mediated growth inhibition. Oncogene 2002; 21: 7850-7860
    • (2002) Oncogene , vol.21 , pp. 7850-7860
    • Afonja, O.1    Raaka, B.M.2    Huang, A.3    Das, S.4    Zhao, X.5    Helmer, E.6    Juste, D.7    Samuels, H.H.8
  • 39
    • 0036372344 scopus 로고    scopus 로고
    • The molecular action of testis-determining factors SRY and SOX9
    • discussion 66-67, 79-85, 253-257
    • Harley VR. The molecular action of testis-determining factors SRY and SOX9. Novartis Found Symp 2002; 244: 57-66; discussion 66-67, 79-85, 253-257
    • (2002) Novartis Found Symp , vol.244 , pp. 57-66
    • Harley, V.R.1
  • 40
    • 6944240429 scopus 로고    scopus 로고
    • Myocyte protection by 10 kD heat shock protein (Hsp10) involves the mobile loop and attenuation of the Ras GTP-ase pathway
    • Lin KM, Hollander JM, Kao VY, Lin B, Macpherson L, Dillmann WH. Myocyte protection by 10 kD heat shock protein (Hsp10) involves the mobile loop and attenuation of the Ras GTP-ase pathway. FASEB J 2004; 18: 1004-1006
    • (2004) FASEB J , vol.18 , pp. 1004-1006
    • Lin, K.M.1    Hollander, J.M.2    Kao, V.Y.3    Lin, B.4    Macpherson, L.5    Dillmann, W.H.6
  • 41
    • 85012505857 scopus 로고    scopus 로고
    • Chaperonins are cell-signalling proteins: The unfolding biology of molecular chaperones
    • Ranford JC, Coates AR, Henderson B. Chaperonins are cell-signalling proteins: the unfolding biology of molecular chaperones. Expert Rev Mol Med 2000; 2000: 1-17
    • (2000) Expert Rev Mol Med , vol.2000 , pp. 1-17
    • Ranford, J.C.1    Coates, A.R.2    Henderson, B.3
  • 42
    • 2342594006 scopus 로고    scopus 로고
    • The role of translation in neoplastic transformation from a pathologist's point of view
    • Rosenwald IB. The role of translation in neoplastic transformation from a pathologist's point of view. Oncogene 2004; 23: 3230-3247
    • (2004) Oncogene , vol.23 , pp. 3230-3247
    • Rosenwald, I.B.1
  • 44
    • 1542358827 scopus 로고    scopus 로고
    • Structure, dynamics and interaction with kinase targets: Computer simulations of calmodulin
    • Yang C, Jas GS, KDczera K. Structure, dynamics and interaction with kinase targets: computer simulations of calmodulin. Biochim Biophys Acta 2004; 1697: 289-300
    • (2004) Biochim Biophys Acta , vol.1697 , pp. 289-300
    • Yang, C.1    Jas, G.S.2    Kdczera, K.3


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