Combining SSH and cDNA microarrays for rapid identification of differentially expressed genes

Nucleic Acids Research

Volumn 27, Issue 6, 1999, Pages 1517-1523

  Yang, George P ^a   Ross, Douglas T ^a   Kuang, Wayne W ^a   Brown, Patrick O ^a   Weigel, Ronald J ^a  

^a STANFORD UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CD24 ANTIGEN; COMPLEMENTARY DNA; CYTOKERATIN 19; ESTROGEN RECEPTOR; FLUORESCENT DYE; GLUTATHIONE TRANSFERASE;

ANALYTIC METHOD; ARTICLE; BIOLOGY; BREAST CANCER; CANCER CELL; CDNA MICROARRAY; CELL LINE; CONTROLLED STUDY; FLOW CYTOMETRY; GENE AMPLIFICATION; GENE EXPRESSION; GENE ISOLATION; GENE OVEREXPRESSION; GENE SEQUENCE; HUMAN; HUMAN CELL; IMMUNOFLUORESCENCE; MOLECULAR CLONING; NORTHERN BLOTTING; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ANTIGENS, CD; ANTIGENS, CD24; BLOTTING, NORTHERN; BREAST NEOPLASMS; CLONING, MOLECULAR; DNA, COMPLEMENTARY; DNA-BINDING PROTEINS; EXPRESSED SEQUENCE TAGS; FEMALE; GATA3 TRANSCRIPTION FACTOR; GENE EXPRESSION; GENE LIBRARY; GLUTATHIONE TRANSFERASE; HUMANS; KERATINS; MEMBRANE GLYCOPROTEINS; NUCLEIC ACID HYBRIDIZATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; RECEPTORS, ESTROGEN; RNA, MESSENGER; SEQUENCE ANALYSIS, DNA; TRANS-ACTIVATORS; TUMOR CELLS, CULTURED;

EID: 0033559117     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/27.6.1517     Document Type: Article

References (39)

1. Tedder, T.F., Strueli, M., Schlossman, S.F. and Saito, H. (1988) Proc. Natl Acad. Sci. USA, 85, 208-212.
2. Davis, N.M., Cohen, D.I., Nielsen, E.A. and Davis, M.M. (1984) Nature (London), 308, 149-153.
3. Lisitsyn, N., Lisitsyn, N. and Wigler, M. (1993) Science, 259, 5640-5648.
4. Hubank, M. and Schatz, D.G. (1994) Nucleic Acids Res., 22, 5640-5648.
5. Liang, P. and Pardee, A.B. (1992) Science, 257, 967-971.
6. Liang, P., Averboukh, L. and Pardee, A.B. (1993) Nucleic Acids Res., 21, 3269-3275.
7. Schummer, M., Ng, W., Nelson, P.S., Bumgarner, R.E. and Hood, L. (1997) Biotechniques, 23, 1087-1092.
8. Velculescu, V.E., Zhang, L., Vogelstein, B. and Kinzler, K.W. (1995) Science, 270, 484-487.
9. Zhang, L., Zhou, W., Velculescu, V.E., Kern, S.E., Hruban, R.H., Hamilton, S.R., Vogelstein, B. and Kinzler, K.W. (1997) Science, 276, 1268-1272.
10. Diatchenko, L., Lau, Y.-F.C., Campbell, A.P., Chenchik, A., Moqadam, F., Huang, B., Lukyanov, S., Lukyanov, K., Gurskaya, N., Sverdlov, E. and Siebert, P.D. (1996) Proc. Natl Acad. Sci. USA, 93, 6025-6030.
11. Kuang, W.W., Thompson, D.A., Hoch, R.V. and Weigel, R.J. (1998) Nucleic Acids Res., 26, 1116-1123.
12. Carmeci, C., Thompson, D.A., Wayne, W.W., Lightdale, N., Furthmayr, H. and Weigel, R.J. (1998) Surgery, 124, 212-217.
13. Schena, M., Dhalon, D., Davis, R.W. and Brown, P.O. (1995) Science, 270, 467-470.
14. Schena, M., Shalon, D., Heller, R., Chai, A., Brown, P.O. and Davis, R.W. (1996) Proc. Natl Acad. Sci. USA, 93, 10614-10619.
15. DeRisi, J.L., Iyer, V.R. and Brown, J.O. (1997) Science, 278, 680-686.
16. Weigel, R.J., Crooks, D.L., Iglehart, J.D. and deConinck, C. (1995) Cell Growth Diff., 6, 707-711.
17. Rougon, G., Alterman, A., Dennis, K., Guo, X.J. and Kinnon, C. (1991) Eur. J. Immunol., 21, 1397-1402.
18. Lavabre-Bertrand, T., Duperray, C., Brunet, C., Poncelet, P., Exbrayat, C., Bourquard, R. Lavabre-Bertrand, C., Navarro, M. and Janossy, G. (1994) Leukemia, 8, 402-408.
19. Hubbe, M. and Altevogt, P. (1994) Eur. J. Immunol., 24, 731-737.
20. Aigner, S., Sthoeger, Z.M., Fogel, M., Weber, E., Zarn, J., Ruppert, M., Zeller, Y., Vestweber, D., Stahel, R., Sammar, M. and Altevogt, P. (1997) Blood, 89, 3385-3395.
21. Trask, D.K., Band, M. Zajchowski, D.A., Yaswen, P., Suh, T. and Sager, R. (1990) Proc. Natl Acad. Sci. USA, 87, 2319-2323.
22. Brotherick, I., Robson, C.N., Browell, D.A., Shenfine, J., White, M.D., Cunliffe, W.J., Shenton, B.K., Egan, M., Webb, L.A., Lunt, L.G., Young, J.R. and Higgs, M.J. (1998) Cytometry, 32, 301-308.
23. Morrow, C.S., Smitherman, P.K., Diah, S.K., Schneider, E. and Townsend, A.J. (1998) J. Biol. Chem., 273, 20114-20120.
24. Hao, X.Y., Widersten, M., Hellman, U. and Mannervik,B. (1994) Biochem. J., 297, 59-67.
25. Maugard, C.M., Charrier, J. and Bignon, Y.J. (1998) Chem. Biol. Interact., 111-112, 365-375.
26. Helzlsouer, K.J., Selmin, O., Huang, H.Y., Strickland, P.T., Hoffman, S., Alberg, A.J., Watson, M., Comstock, G.W. and Bell, D. (1998) J. Natl Cancer Inst., 90, 512-518.
27. Hoch, R.V. Thompson, D.A., McPherson, L.A., Baker, R.J. and Weigel, R.J. (1999) Int. J. Cancer, in press.
28. Zheng, W.-P. and Flavell, R.A. (1997) Cell, 89, 587-596.
29. Zhang, D.-H. Cohn, L., Ray, P., Bottomly, K. and Ray, A. (1997) J. Biol. Chem., 272, 21597-21603.
30. Ho, J.-C., Vorhees, P., Marin, N., Oakley, B.K., Tsai, S.-F. Orkin, S.H. and Leiden, J.M. (1991) EMBO J., 10, 1187-1192.
31. Joulin, V., Bories, D., Eléouet, J.-F., Labastie, M.-C., Chrétien, S., Mattéi, M.-G. and Roméo, P.-H. (1991) EMBO J., 10, 1809-1816.
32. Ko, L.J., Yamamoto, M., Leonard, M.W., George, K.M., Ting, P. and Engel, J.D. (1991) Mol. Cell. Biol., 11, 2778-2784.
33. Shirasawa, T., Akashi, T., Sakamoto, K., Takahashi, H., Maruyama, N. and Hirokawa, K. (1993) Dev. Dyn., 198, 1-13.
34. Magnaldo, T. and Barrandon, Y. (1996) J. Cell Sci., 109, 3035-3045.
35. Sammar, M., Gulbins, E., Hilbert, K., Lang, F. and Altevogt, P. (1997) Biochem. Biophys. Res. Commun., 234, 330-334.
36. Lund-Johansen, F., Olweus, J., Symington, F.W., Arli, A., Thompson, J.S., Vilella, R., Skubitz, K. and Horejsi, V. (1993) Eur. J. Immunol., 23, 2782-2791.
37. Zarn, J.A., Zimmermann, S.M., Pass, M.K., Waibel, R. and Stahel, R.A. (1996) Biochem. Biophys. Res. Commun., 225, 384-391.
38. Huang, L.R. and Hsu, H.C. (1995) Cancer Res., 55, 4717-1721.
39. Welford, S.M., Gregg, J., Chen, E., Garrison, D., Sorensen, P.H., Denny, C.T. and Nelson, S.F. (1998) Nucleic Acids. Res., 26, 3059-3065.