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Volumn 59, Issue 5, 2006, Pages 1559-1575

Identification of a megaplasmid centromere reveals genetic structural diversity within the repABC family of basic replicons

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; CENTROMERE; GENE IDENTIFICATION; GENE LOCUS; GENE SEQUENCE; GENETIC VARIABILITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLASMID; POINT MUTATION; PRIORITY JOURNAL; REPABC GENE; REPLICON; RHIZOBIUM RADIOBACTER;

EID: 33645067923     PISSN: 0950382X     EISSN: 13652958     Source Type: Journal    
DOI: 10.1111/j.1365-2958.2006.05040.x     Document Type: Article
Times cited : (29)

References (50)
  • 2
    • 0025129122 scopus 로고
    • Partition-mediated incompatibility of bacterial plasmids
    • Austin S. Nordstrom K. 1990 Partition-mediated incompatibility of bacterial plasmids Cell 60 351 354
    • (1990) Cell , vol.60 , pp. 351-354
    • Austin, S.1    Nordstrom, K.2
  • 3
    • 17844403033 scopus 로고    scopus 로고
    • Bacterial DNA segregation dynamics mediated by the polymerizing protein ParF
    • Barilla D. Rosenberg MF. Nobbmann U. Hayes F. 2005 Bacterial DNA segregation dynamics mediated by the polymerizing protein ParF EMBO J 24 1453 1464
    • (2005) EMBO J , vol.24 , pp. 1453-1464
    • Barilla, D.1    Rosenberg, M.F.2    Nobbmann, U.3    Hayes, F.4
  • 4
    • 0031766816 scopus 로고    scopus 로고
    • Molecular and functional analysis of pTAV320, a repABC-type replicon of the Paracoccus versutus composite plasmid pTAV1
    • Bartosik D. Baj J. Wlodarczyk M. 1998 Molecular and functional analysis of pTAV320, a repABC-type replicon of the Paracoccus versutus composite plasmid pTAV1 Microbiology 144 3149 3157
    • (1998) Microbiology , vol.144 , pp. 3149-3157
    • Bartosik, D.1    Baj, J.2    Wlodarczyk, M.3
  • 5
    • 0035688331 scopus 로고    scopus 로고
    • Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1
    • Bartosik D. Szymanik M. Wysocka E. 2001 Identification of the partitioning site within the repABC-type replicon of the composite Paracoccus versutus plasmid pTAV1 J Bacteriol 183 6234 6243
    • (2001) J Bacteriol , vol.183 , pp. 6234-6243
    • Bartosik, D.1    Szymanik, M.2    Wysocka, E.3
  • 6
    • 0028100833 scopus 로고
    • A single 43-bp sopC repeat of plasmid mini-F is sufficient to allow assembly of a functional nucleoprotein partition complex
    • Biek DP. Shi J. 1994 A single 43-bp sopC repeat of plasmid mini-F is sufficient to allow assembly of a functional nucleoprotein partition complex Proc Natl Acad Sci USA 91 8027 8031
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8027-8031
    • Biek, D.P.1    Shi, J.2
  • 7
    • 0035856287 scopus 로고    scopus 로고
    • The bacterial ParA-ParB partitioning proteins
    • Bignell C. Thomas CM. 2001 The bacterial ParA-ParB partitioning proteins J Biotechnol 91 1 34
    • (2001) J Biotechnol , vol.91 , pp. 1-34
    • Bignell, C.1    Thomas, C.M.2
  • 8
    • 0033106245 scopus 로고    scopus 로고
    • P1 para interacts with the P1 partition complex at parS and an ATP-ADP switch controls para activities
    • Bouet JY. Funnell BE. 1999 P1 ParA interacts with the P1 partition complex at parS and an ATP-ADP switch controls ParA activities EMBO J 18 1415 1424
    • (1999) EMBO J , vol.18 , pp. 1415-1424
    • Bouet, J.Y.1    Funnell, B.E.2
  • 9
    • 0034677797 scopus 로고    scopus 로고
    • Stoichiometry of P1 plasmid partition complexes
    • Bouet JY. Surtees JA. Funnell BE. 2000 Stoichiometry of P1 plasmid partition complexes J Biol Chem 275 8213 8219
    • (2000) J Biol Chem , vol.275 , pp. 8213-8219
    • Bouet, J.Y.1    Surtees, J.A.2    Funnell, B.E.3
  • 10
    • 0036926113 scopus 로고    scopus 로고
    • Antisense RNAs in plasmids: Control of replication and maintenance
    • Brantl S. 2002 Antisense RNAs in plasmids: control of replication and maintenance Plasmid 48 165 173
    • (2002) Plasmid , vol.48 , pp. 165-173
    • Brantl, S.1
  • 11
  • 12
    • 20344388541 scopus 로고    scopus 로고
    • A small antisense RNA downregulates expression of an essential replicase protein of an Agrobacterium tumefaciens Ti plasmid
    • Chai Y. Winans SC. 2005a A small antisense RNA downregulates expression of an essential replicase protein of an Agrobacterium tumefaciens Ti plasmid Mol Microbiol 56 1574 1585
    • (2005) Mol Microbiol , vol.56 , pp. 1574-1585
    • Chai, Y.1    Winans, S.C.2
  • 13
    • 27944462541 scopus 로고    scopus 로고
    • RepB protein of an Agrobacterium tumefaciens Ti plasmid binds to two adjacent sites between repA and repB for plasmid partitioning and autorepression
    • Chai Y. Winans SC. 2005b RepB protein of an Agrobacterium tumefaciens Ti plasmid binds to two adjacent sites between repA and repB for plasmid partitioning and autorepression Mol Microbiol 58 1114 1129
    • (2005) Mol Microbiol , vol.58 , pp. 1114-1129
    • Chai, Y.1    Winans, S.C.2
  • 14
    • 0024023206 scopus 로고
    • Recognition of the P1 plasmid centromere analog involves binding of the ParB protein and is modified by a specific host factor
    • Davis MA. Austin SJ. 1988 Recognition of the P1 plasmid centromere analog involves binding of the ParB protein and is modified by a specific host factor EMBO J 7 1881 1888
    • (1988) EMBO J , vol.7 , pp. 1881-1888
    • Davis, M.A.1    Austin, S.J.2
  • 15
    • 0025342985 scopus 로고
    • Specificity switching of the P1 plasmid centromere-like site
    • Davis MA. Martin KA. Austin SJ. 1990 Specificity switching of the P1 plasmid centromere-like site EMBO J 9 991 998
    • (1990) EMBO J , vol.9 , pp. 991-998
    • Davis, M.A.1    Martin, K.A.2    Austin, S.J.3
  • 17
    • 0346220018 scopus 로고    scopus 로고
    • RP4 repressor protein KorB binds to the major groove of the operator DNA: A Raman study
    • Dostal L. Khare D. Bok J. Heinemann U. Lanka E. Welfle H. 2003 RP4 repressor protein KorB binds to the major groove of the operator DNA: a Raman study Biochemistry 42 14476 14482
    • (2003) Biochemistry , vol.42 , pp. 14476-14482
    • Dostal, L.1    Khare, D.2    Bok, J.3    Heinemann, U.4    Lanka, E.5    Welfle, H.6
  • 18
    • 0031438685 scopus 로고    scopus 로고
    • Searching for patterns in genomic data
    • Dsouza M. Larsen N. Overbeek R. 1997 Searching for patterns in genomic data Trends Genet 13 497 498
    • (1997) Trends Genet , vol.13 , pp. 497-498
    • Dsouza, M.1    Larsen, N.2    Overbeek, R.3
  • 19
    • 0035910030 scopus 로고    scopus 로고
    • The double par locus of virulence factor pB171: DNA segregation is correlated with oscillation of para
    • Ebersbach G. Gerdes K. 2001 The double par locus of virulence factor pB171: DNA segregation is correlated with oscillation of ParA Proc Natl Acad Sci USA 98 15078 15083
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 15078-15083
    • Ebersbach, G.1    Gerdes, K.2
  • 20
    • 0022474397 scopus 로고
    • Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes
    • Finan TM. Kunkel B. De Vos GF. Signer ER. 1986 Second symbiotic megaplasmid in Rhizobium meliloti carrying exopolysaccharide and thiamine synthesis genes J Bacteriol 167 66 72
    • (1986) J Bacteriol , vol.167 , pp. 66-72
    • Finan, T.M.1    Kunkel, B.2    De Vos, G.F.3    Signer, E.R.4
  • 21
    • 0035801498 scopus 로고    scopus 로고
    • Probing the ATP-binding site of P1 ParA: Partition and repression have different requirements for ATP binding and hydrolysis
    • Fung E. Bouet JY. Funnell BE. 2001 Probing the ATP-binding site of P1 ParA: partition and repression have different requirements for ATP binding and hydrolysis EMBO J 20 4901 4911
    • (2001) EMBO J , vol.20 , pp. 4901-4911
    • Fung, E.1    Bouet, J.Y.2    Funnell, B.E.3
  • 22
    • 0026329118 scopus 로고
    • The P1 plasmid partition complex at parS. the influence of Escherichia coli integration host factor and of substrate topology
    • Funnell BE. 1991 The P1 plasmid partition complex at parS. The influence of Escherichia coli integration host factor and of substrate topology J Biol Chem 266 14328 14337
    • (1991) J Biol Chem , vol.266 , pp. 14328-14337
    • Funnell, B.E.1
  • 23
    • 0035958746 scopus 로고    scopus 로고
    • The composite genome of the legume symbiont Sinorhizobium meliloti
    • Galibert F. Finan TM. Long SR. Puhler A. Abola P. Ampe F. et al. 2001 The composite genome of the legume symbiont Sinorhizobium meliloti Science 293 668 672
    • (2001) Science , vol.293 , pp. 668-672
    • Galibert, F.1    Finan, T.M.2    Long, S.R.3    Puhler, A.4    Abola, P.5    Ampe, F.6
  • 24
    • 0022445344 scopus 로고
    • Twelve 43-base-pair repeats map in a cis-acting region essential for partition of plasmid mini-F
    • Helsberg M. Eichenlaub R. 1986 Twelve 43-base-pair repeats map in a cis-acting region essential for partition of plasmid mini-F J Bacteriol 165 1043 1045
    • (1986) J Bacteriol , vol.165 , pp. 1043-1045
    • Helsberg, M.1    Eichenlaub, R.2
  • 25
    • 0037539991 scopus 로고    scopus 로고
    • A mechanism for ParB-dependent waves of ParA, a protein related to DNA segregation during cell division in prokaryotes
    • Hunding A. Ebersbach G. Gerdes K. 2003 A mechanism for ParB-dependent waves of ParA, a protein related to DNA segregation during cell division in prokaryotes J Mol Biol 329 35 43
    • (2003) J Mol Biol , vol.329 , pp. 35-43
    • Hunding, A.1    Ebersbach, G.2    Gerdes, K.3
  • 27
    • 0032924788 scopus 로고    scopus 로고
    • IncC of broad-host-range plasmid RK2 modulates KorB transcriptional repressor activity in vivo and operator binding in vitro
    • Jagura-Burdzy G. Kostelidou K. Pole J. Khare D. Jones A. Williams DR. Thomas CM. 1999 IncC of broad-host-range plasmid RK2 modulates KorB transcriptional repressor activity in vivo and operator binding in vitro J Bacteriol 181 2807 2815
    • (1999) J Bacteriol , vol.181 , pp. 2807-2815
    • Jagura-Burdzy, G.1    Kostelidou, K.2    Pole, J.3    Khare, D.4    Jones, A.5    Williams, D.R.6    Thomas, C.M.7
  • 28
    • 0037515724 scopus 로고    scopus 로고
    • Polar localization of replicon origins in the multipartite genomes of Agrobacterium tumefaciens and Sinorhizobium meliloti
    • Kahng LS. Shapiro L. 2003 Polar localization of replicon origins in the multipartite genomes of Agrobacterium tumefaciens and Sinorhizobium meliloti J Bacteriol 185 3384 3391
    • (2003) J Bacteriol , vol.185 , pp. 3384-3391
    • Kahng, L.S.1    Shapiro, L.2
  • 29
    • 0028793123 scopus 로고
    • Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes
    • Kovach ME. Elzer PH. Hill DS. Robertson GT. Farris MA. Roop RM. Peterson KM 1995 Four new derivatives of the broad-host-range cloning vector pBBR1MCS, carrying different antibiotic-resistance cassettes Gene 166 175 176
    • (1995) Gene , vol.166 , pp. 175-176
    • Kovach, M.E.1    Elzer, P.H.2    Hill, D.S.3    Robertson, G.T.4    Farris, M.A.5    Roop, R.M.6    Peterson, K.M.7
  • 31
    • 0033988273 scopus 로고    scopus 로고
    • The replicator of the nopaline-type Ti plasmid pTiC58 is a member of the repABC family and is influenced by the TraR-dependent quorum-sensing regulatory system
    • Li PL. Farrand SK. 2000 The replicator of the nopaline-type Ti plasmid pTiC58 is a member of the repABC family and is influenced by the TraR-dependent quorum-sensing regulatory system J Bacteriol 182 179 188
    • (2000) J Bacteriol , vol.182 , pp. 179-188
    • Li, P.L.1    Farrand, S.K.2
  • 33
    • 12344330656 scopus 로고    scopus 로고
    • Second chromosomes and megaplasmids in bacteria
    • In. American Society for Microbiology Press Washington, DC pp.
    • MacLellan SR. Sibley CD. Finan TM. 2004 Second chromosomes and megaplasmids in bacteria In Plasmid Biology Funnell BE. Phillips GJ. (eds) Washington, DC American Society for Microbiology Press pp. 529 542
    • (2004) Plasmid Biology*Funnell B.E.*Phillips G.J. (Eds) , pp. 529-542
    • MacLellan, S.R.1    Sibley, C.D.2    Finan, T.M.3
  • 34
    • 13144275222 scopus 로고    scopus 로고
    • The expression of a novel antisense gene mediates incompatibility within the large repABC family of alpha-proteobacterial plasmids
    • MacLellan SR. Smallbone LA. Sibley CD. Finan TM. 2005 The expression of a novel antisense gene mediates incompatibility within the large repABC family of alpha-proteobacterial plasmids Mol Microbiol 55 611 623
    • (2005) Mol Microbiol , vol.55 , pp. 611-623
    • MacLellan, S.R.1    Smallbone, L.A.2    Sibley, C.D.3    Finan, T.M.4
  • 35
    • 0023575486 scopus 로고
    • Plasmid incompatibility
    • Novick RP. 1987 Plasmid incompatibility Microbiol Rev 51 381 395
    • (1987) Microbiol Rev , vol.51 , pp. 381-395
    • Novick, R.P.1
  • 36
    • 0034038755 scopus 로고    scopus 로고
    • Megaplasmid pRme2011a of Sinorhizobium meliloti is not required for viability
    • Oresnik IJ. Liu SL. Yost CK. Hynes MF. 2000 Megaplasmid pRme2011a of Sinorhizobium meliloti is not required for viability J Bacteriol 182 3582 3586
    • (2000) J Bacteriol , vol.182 , pp. 3582-3586
    • Oresnik, I.J.1    Liu, S.L.2    Yost, C.K.3    Hynes, M.F.4
  • 37
    • 0028951246 scopus 로고
    • Molecular and expression analysis of the Rhizobium meliloti phosphoenolpyruvate carboxykinase (pckA) gene
    • Osteras M. Driscoll BT. Finan TM. 1995 Molecular and expression analysis of the Rhizobium meliloti phosphoenolpyruvate carboxykinase (pckA) gene J Bacteriol 177 1452 1460
    • (1995) J Bacteriol , vol.177 , pp. 1452-1460
    • Osteras, M.1    Driscoll, B.T.2    Finan, T.M.3
  • 38
    • 0037772151 scopus 로고    scopus 로고
    • The RepA and RepB autorepressors and TraR play opposing roles in the regulation of a Ti plasmid repABC operon
    • Pappas KM. Winans SC. 2003 The RepA and RepB autorepressors and TraR play opposing roles in the regulation of a Ti plasmid repABC operon Mol Microbiol 49 441 455
    • (2003) Mol Microbiol , vol.49 , pp. 441-455
    • Pappas, K.M.1    Winans, S.C.2
  • 39
  • 40
    • 0036434923 scopus 로고    scopus 로고
    • A site-specific recombinase (RinQ) is required to exert incompatibility towards the symbiotic plasmid of Rhizobium etli
    • Quintero V. Cevallos MA. Davila G. 2002 A site-specific recombinase (RinQ) is required to exert incompatibility towards the symbiotic plasmid of Rhizobium etli Mol Microbiol 46 1023 1032
    • (2002) Mol Microbiol , vol.46 , pp. 1023-1032
    • Quintero, V.1    Cevallos, M.A.2    Davila, G.3
  • 41
    • 0034035274 scopus 로고    scopus 로고
    • Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid
    • Ramirez-Romero MA. Soberon N. Perez-Oseguera A. Tellez-Sosa J. Cevallos MA. 2000 Structural elements required for replication and incompatibility of the Rhizobium etli symbiotic plasmid J Bacteriol 182 3117 3124
    • (2000) J Bacteriol , vol.182 , pp. 3117-3124
    • Ramirez-Romero, M.A.1    Soberon, N.2    Perez-Oseguera, A.3    Tellez-Sosa, J.4    Cevallos, M.A.5
  • 42
    • 0035725467 scopus 로고    scopus 로고
    • RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon
    • Ramirez-Romero MA. Tellez-Sosa J. Barrios H. Perez-Oseguera A. Rosas V. Cevallos MA. 2001 RepA negatively autoregulates the transcription of the repABC operon of the Rhizobium etli symbiotic plasmid basic replicon Mol Microbiol 42 195 204
    • (2001) Mol Microbiol , vol.42 , pp. 195-204
    • Ramirez-Romero, M.A.1    Tellez-Sosa, J.2    Barrios, H.3    Perez-Oseguera, A.4    Rosas, V.5    Cevallos, M.A.6
  • 43
    • 0033053645 scopus 로고    scopus 로고
    • Constructs for insertional mutagenesis, transcriptional signal localization and gene regulation studies in root nodule and other bacteria
    • Reeve WG. Tiwari RP. Worsley PS. Dilworth MJ. Glenn AR. Howieson JG. 1999 Constructs for insertional mutagenesis, transcriptional signal localization and gene regulation studies in root nodule and other bacteria Microbiology 145 1307 1316
    • (1999) Microbiology , vol.145 , pp. 1307-1316
    • Reeve, W.G.1    Tiwari, R.P.2    Worsley, P.S.3    Dilworth, M.J.4    Glenn, A.R.5    Howieson, J.G.6
  • 44
    • 1942487206 scopus 로고    scopus 로고
    • Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli
    • Soberon N. Venkova-Canova T. Ramirez-Romero MA. Tellez-Sosa J. Cevallos MA. 2004 Incompatibility and the partitioning site of the repABC basic replicon of the symbiotic plasmid from Rhizobium etli Plasmid 51 203 216
    • (2004) Plasmid , vol.51 , pp. 203-216
    • Soberon, N.1    Venkova-Canova, T.2    Ramirez-Romero, M.A.3    Tellez-Sosa, J.4    Cevallos, M.A.5
  • 45
    • 0035853857 scopus 로고    scopus 로고
    • The DNA binding domains of P1 ParB and the architecture of the P1 plasmid partition complex
    • Surtees JA. Funnell BE. 2001 The DNA binding domains of P1 ParB and the architecture of the P1 plasmid partition complex J Biol Chem 276 12385 12394
    • (2001) J Biol Chem , vol.276 , pp. 12385-12394
    • Surtees, J.A.1    Funnell, B.E.2
  • 46
    • 0024635643 scopus 로고
    • Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3
    • Tabata S. Hooykaas PJ. Oka A. 1989 Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3 J Bacteriol 171 1665 1672
    • (1989) J Bacteriol , vol.171 , pp. 1665-1672
    • Tabata, S.1    Hooykaas, P.J.2    Oka, A.3
  • 47
    • 0033854944 scopus 로고    scopus 로고
    • Paradigms of plasmid organization
    • Thomas CM. 2000 Paradigms of plasmid organization Mol Microbiol 37 485 491
    • (2000) Mol Microbiol , vol.37 , pp. 485-491
    • Thomas, C.M.1
  • 48
    • 9644278330 scopus 로고    scopus 로고
    • Two discrete elements are required for the replication of a repABC plasmid: An antisense RNA and a stem-loop structure
    • Venkova-Canova T. Soberon NE. Ramirez-Romero MA. Cevallos MA. 2004 Two discrete elements are required for the replication of a repABC plasmid: an antisense RNA and a stem-loop structure Mol Microbiol 54 1431 1444
    • (2004) Mol Microbiol , vol.54 , pp. 1431-1444
    • Venkova-Canova, T.1    Soberon, N.E.2    Ramirez-Romero, M.A.3    Cevallos, M.A.4
  • 49
    • 0035038813 scopus 로고    scopus 로고
    • The sequence requirements for a functional Escherichia coli replication origin are different for the chromosome and a minichromosome
    • Weigel C. Messer W. Preiss S. Welzeck M. Morigen and Boye E. 2001 The sequence requirements for a functional Escherichia coli replication origin are different for the chromosome and a minichromosome Mol Microbiol 40 498 507
    • (2001) Mol Microbiol , vol.40 , pp. 498-507
    • Weigel, C.1    Messer, W.2    Preiss, S.3    Welzeck, M.4    Morigen5    Boye, E.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.